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Prénom : Yannis
Equipe : SEE
Grade : DR1
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Téléphone : (+33) 4 48 19 18 67
Fax : (+33) 4 67 41 62 99
Bureau : 114
Implantation : CNRS/IRD La Valette
Appartenance : CNRS
Thématique : évolution traits d'histoire de vie, virulence, résistance, adaptation locale

Publications :

Blanc S, Michalakis Y (2016) Manipulation of hosts and vectors by plant viruses and impact of the environment. Current Opinion in Insect Science 16: 36-43 doi

Lievens EJP, Henriques GJB, Michalakis Y, Lenormand T (2016) Maladaptive sex ratio adjustment in the invasive brine shrimp Artemia franciscana. Current Biology 26: 1463-1467 doi

Sicard A, Michalakis Y, Gutiérrez S, Blanc S (2016) The strange lifestyle of multipartite viruses. PLoS Pathogens 12: e1005819 doi

Thebaud G, Michalakis Y (2016) Comment on "Large bottleneck size in cauliflower mosaic virus populations during host plant colonization" by Monsion et al. (2008). PLoS Pathogens 12: e1005512 doi

Alizon S, Michalakis Y (2015) Adaptive virulence evolution: the good old fitness-based approach. Trends in Ecology & Evolution. 30: 248-254 doi

Duncan AB, Agnew P, Noel V & Michalakis Y (2015) The consequences of co-infections for parasite transmission in the mosquito Aedes aegypti. Journal of Animal Ecology. 84: 498-508 doi

Gutiérrez S, Pirolles E, Yvon M, Baecker V, Michalakis Y, Blanc S (2015) The multiplicity of cellular infection changes depending on the route of cell infection in a plant virus. Journal of Virology 89: 9665-9675 doi

Sicard A, Zeddam JL, Yvon M, Michalakis Y, Gutiérrez S, Blanc S (2015) Circulative nonpropagative aphid transmission of nanoviruses: an oversimplified view. Journal of Virology 89: 9719-9726 doi

Sofonea MT, Alizon S, Michalakis Y (2015) From within-host interactions to epidemiological competition: a general model for multiple infections. Philosophical Transactions of the Royal Society B: Biological Sciences 370: 20140303 doi

Park AW, Vandekerkhove J & Michalakis Y (2014) Sex in an uncertain world: environmental stochasticity helps restore competitive balance between sexually and asexually reproducing populations. Journal of Evolutionary Biology. 27: 1650-1661 doi pdf

Sangare I, Dabire R, Yameogo B, Da DF, Michalakis Y & Cohuet A (2014) Stress dependent infection cost of the human malaria agent Plasmodium falciparum on its natural vector Anopheles coluzzii. Infection, Genetics and Evolution. 25: 57-65 doi

Sy VE, Agnew P, Sidobre C & Michalakis Y (2014) Reduced survival and reproductive success generates selection pressure for the dengue mosquito Aedes aegypti to evolve resistance against infection by the microsporidian parasite Vavraia culicis. Evolutionary Applications. 7: 468-479 doi pdf

Alizon S, de Roode JC & Michalakis Y (2013) Multiple infections and the evolution of virulence. Ecology Letters. 16: 556-567 doi

Decaestecker E, De Gersem H, Michalakis Y & Raeymaekers JAM (2013) Damped long-term host-parasite Red Queen coevolutionary dynamics: a reflection of dilution effects? Ecology Letters. 16: 1455-1462 doi

Doumayrou J, Avellan A, Froissart R & Michalakis Y (2013) An experimental test of the transmission-virulence trade-off in a plant virus. Evolution. 67: 477-486 doi

Doumayrou J, Leblaye S, Froissart R & Michalakis Y (2013) Reduction of leaf area and symptom severity as proxies of disease-induced plant mortality: The example of the Cauliflower mosaic virus infecting two Brassicaceae hosts. Virus Research. 176: 91-100 doi

Gutiérrez S, Michalakis Y, Van Munster M & Blanc S (2013) Plant feeding by insect vectors can affect life cycle, population genetics and evolution of plant viruses. Functional Ecology. 27: 610-622 doi

Rode NO, Landes J, Lievens EJP, Flaven E, Segard A, Jabbour-Zahab R, Michalakis Y, Agnew P, Vivares CP & Lenormand T (2013) Cytological, molecular and life cycle characterization of Anostracospora rigaudi n. g., n. sp and Enterocytospora artemiae n. g., n. sp., two new microsporidian parasites infecting gut tissues of the brine shrimp Artemia. Parasitology. 140: 1168-1185 doi pdf

Sangare I, Michalakis Y, Yameogo B, Dabire R, Morlais I & Cohuet A (2013) Studying fitness cost of Plasmodium falciparum infection in malaria vectors: validation of an appropriate negative control. Malaria Journal. 12: 2 doi

Schmit O, Adolfsson S, Vandekerkhove J, Rueda J, Bode SNS, Rossetti G, Michalakis Y, Jokela J, Martens K & Mesquita-Joanes F (2013) The distribution of sexual reproduction of the geographic parthenogen Eucypris virens (Crustacea: Ostracoda) matches environmental gradients in a temporary lake. Canadian Journal of Zoology. 91: 660-671 doi

Schmit O, Fukova I, Vandekerkhove J, Michalakis Y, Matzke-Karasz R, Rossetti G, Martens K & Mesquita-Joanes F (2013) Mate recognition as a reproductive barrier in sexual and parthenogenetic Eucypris virens (Crustacea, Ostracoda). Animal Behaviour. 85: 977-985 doi

Sicard A, Yvon M, Timchenko T, Gronenborn B, Michalakis Y, Gutierrez S & Blanc S (2013) Gene copy number is differentially regulated in a multipartite virus. Nature Communications. 4: 2248 doi

Duncan AB, Agnew P, Noel V, Demettre E, Seveno M, Brizard JP & Michalakis Y (2012) Proteome of Aedes aegypti in response to infection and coinfection with microsporidian parasites. Ecology and Evolution. 3: 199 doi pdf

Gutiérrez S, Michalakis Y & Blanc S (2012) Virus population bottlenecks during within-host progression and host-to-host transmission. Current Opinion in Virology. 2: 546–555 doi

Gutiérrez S, Yvon M, Pirolles E, Garzo E, Fereres A, Michalakis Y & Blanc S (2012) Circulating virus load determines the size of bottlenecks in viral populations progressing within a host. PLoS Pathogens. 8: e1003009 doi

Abbot P, Abe J, Alcock J, Alizon S, Alpedrinha JA, Andersson M, Andre JB, van Baalen M, Balloux F, Balshine S, Barton N, Beukeboom LW, Biernaskie JM, Bilde T, Borgia G, Breed M, Brown S, Bshary R, Buckling A, Burley NT, Burton-Chellew MN, Cant MA, Chapuisat M, Charnov EL, Clutton-Brock T, Cockburn A, Cole BJ, Colegrave N, Cosmides L, Couzin ID, Coyne JA, Creel S, Crespi B, Curry RL, Dall SR, Day T, Dickinson JL, Dugatkin LA, El Mouden C, Emlen ST, Evans J, Ferriere R, Field J, Foitzik S, Foster K, Foster WA, Fox CW, Gadau J, Gandon S, Gardner A, Gardner MG, Getty T, Goodisman MA, Grafen A, Grosberg R, Grozinger CM, Gouyon PH, Gwynne D, Harvey PH, Hatchwell BJ, Heinze J, Helantera H, Helms KR, Hill K, Jiricny N, Johnstone RA, Kacelnik A, Kiers ET, Kokko H, Komdeur J, Korb J, Kronauer D, Kummerli R, Lehmann L, Linksvayer TA, Lion S, Lyon B, Marshall JA, McElreath R, Michalakis Y, Michod RE, Mock D, Monnin T, Montgomerie R, Moore AJ, Mueller UG, Noe R, Okasha S, Pamilo P, Parker GA, Pedersen JS, Pen I, Pfennig D, Queller DC, Rankin DJ, Reece SE, Reeve HK, Reuter M, Roberts G, Robson SK, Roze D, Rousset F, Rueppell O, Sachs JL, Santorelli L, Schmid-Hempel P, Schwarz MP, Scott-Phillips T, Shellmann-Sherman J, Sherman PW, Shuker DM, Smith J, Spagna JC, Strassmann B, Suarez AV, Sundstrom L, Taborsky M, Taylor P, Thompson G, Tooby J, Tsutsui ND, Tsuji K, Turillazzi S, Ubeda F, Vargo EL, Voelkl B, Wenseleers T, West SA, West-Eberhard MJ, Westneat DF, Wiernasz DC, Wild G, Wrangham R, Young AJ, Zeh DW, Zeh JA & Zink A (2011) Inclusive fitness theory and eusociality. Nature. 471: E1-4; author reply E9-10 doi

Alizon S & Michalakis Y (2011) The transmission-virulence trade-off and superinfection: comments to Smith. Evolution. 65: 3633-3638 doi

Adolfsson S, Michalakis Y, Paczesniak D, Bode SN, Butlin RK, Lamatsch DK, Martins MJ, Schmit O, Vandekerkhove J & Jokela J (2010) Evaluation of elevated ploidy and asexual reproduction as alternative explanations for geographic parthenogenesis in Eucypris virens ostracods. Evolution. 64: 986-997 pdf

Chapuis MP, Crespin L, Estoup A, Auge-Sabatier A, Foucart A, Lecoq M & Michalakis Y (2010) Parental crowding influences life-history traits in Locusta migratoria females. Bulletin of Entomological Research. 100: 9-17 pdf

Echaubard P, Duron O, Agnew P, Sidobre C, Noel V, Weill M & Michalakis Y (2010) Rapid evolution of Wolbachia density in insecticide resistant Culex pipiens. Heredity. 104: 15-19 pdf

Froissart R, Doumayrou J, Vuillaume F, Alizon S & Michalakis Y (2010) The virulence-transmission trade-off in vector-borne plant viruses: a review of (non-)existing studies. Philosophical Transactions of the Royal Society B: Biological Sciences. 365: 1907-1918 pdf

Gutiérrez S, Yvon M, Thébaud G, Monsion B, Michalakis Y & Blanc S (2010) Dynamics of the multiplicity of cellular infection in a plant virus. PLoS Pathogens. 6: e1001113 pdf

Michalakis Y, Charmentier A, Gaillard JM, Sorci G, Tully T & O Ronce (2010) Evolution des traits d'histoire de vie. In Biologie Evolutive. Eds. Thomas F, Lefèvre T & Raymond M. pp. 339-386. De Boeck, Bruxelles.

Park AW, Jokela J & Michalakis Y (2010) Parasites and deleterious mutations: interactions influencing the evolutionary maintenance of sex. Journal of Evolutionary Biology. 23: 1013-1023 pdf

Chapuis MP, Loiseau A, Michalakis Y, Lecoq M, Franc A & Estoup A (2009) Outbreaks, gene flow and effective population size in the migratory locust, Locusta migratoria: a regional-scale comparative survey. Molecular Ecology. 18: 792-800 pdf

Michalakis Y & Renaud F (2009) Malaria: Evolution in vector control. Nature. 462: 298-300

Michalakis Y (2009) Parasitism and the evolution of life-history traits. In Ecology and evolution of parasitism. Eds. Thomas F, Guégan JF & Renaud F. pp. 19-30. Oxford University Press, Oxford.

Chapuis MP, Estoup A, Augé-Sabatier A, Foucart A, Lecoq M & Michalakis Y (2008) Genetic variation for parental effects on the propensity to gregarize in Locusta migratoria. BMC Evolutionary Biology. 8: 37 pdf

Chapuis MP, Lecoq M, Michalakis Y, Loiseau A, Sword GA, Piry S & Estoup A (2008) Do outbreaks affect population structure? A worldwide survey in Locusta migratoria, a pest plagued by microsatellite null alleles. Molecular Ecology. 17: 3640 pdf

Gavrilets S & Michalakis Y (2008) Effects of environmental heterogeneity on victim-exploiter coevolution. Evolution. 62: 3100-3116 pdf

Michalakis Y, Bedhomme S, Biron DG, Rivero A, Sidobre C & Agnew P (2008) Virulence and resistance in a mosquito-microsporidium interaction. Evolutionary Applications. 1: 49-56 pdf

Monsion B, Froissart R, Michalakis Y & Blanc S (2008) Large bottleneck size in Cauliflower Mosaic Virus populations during host plant colonization. PLoS Pathogens. 4: e1000174 pdf

Olivieri I, Singer MC, Magalhaes S, Courtiol A, Dubois Y, Carbonell D, Justy F, Beldade P, Parmesan C & Michalakis Y (2008) Genetic, ecological, behavioral, and geographic differentiation of populations in a thistle weevil: implications for speciation and biocontrol. Evolutionary Applications. 1: 112-128 pdf

Michalakis Y (2007) Parasitisme et évolution des traits d'histoire de vie. In Ecologie et évolution des systèmes parasites. (Eds. Thomas F, Guégan JF & Renaud F) de Boeck, Bruxelles pdf

Rivero A, Agnew P, Bedhomme S, Sidobre C & Michalakis Y (2007) Resource depletion in Aedes aegypti mosquitoes infected by the microsporidia Vavraia culicis. Parasitology. 134: 1355-1362 pdf

Bedhomme S, Agnew P, Sidobre C & Michalakis Y (2005) Pollution by conspecifics as a component of intraspecific competition among Aedes aegypti larvae. Ecological Entomology. 30: 1-7 pdf

Bedhomme S, Agnew P, Vital POY, Sidobre C & Michalakis Y (2005) Prevalence-dependent costs of parasite virulence. PLoS Biology. 3: e262 [- synopsis -] doi pdf

Biron DG, Agnew P, Marche L, Sidobre C & Michalakis Y (2005) Proteome of Aedes aegypti larvae in response to infection by the intracellular parasite Vavraia culicis. International Journal for Parasitology. 35: 1385-1397 pdf

Chapuis MP, Loiseau A, Michalakis Y, Lecoq M & Estoup A (2005) Characterization and PCR multiplexing of polymorphic microsatellite loci for the locust Locusta migratoria. Molecular Ecology Notes. 5: 554-557

Froissart R, Roze D, Uzest M, Galibert L, Blanc S & Michalakis Y (2005) Recombination every day: Abundant recombination in a virus during a single multi-cellular host infectiton. PLoS Biology. 3: e89 [- synopsis -] pdf

McCoy KD, Chapuis E, Tirard C, Boulinier T, Michalakis Y, Bohec CL, Maho YL & Gauthier-Clerc M (2005) Recurrent evolution of host-specialized races in a globally distributed parasite. Proceedings of the Royal Society of London, Series B. 272: 2389-95. pdf

Michalakis Y & Renaud F (2005) Malaria - fungal allies enlisted. Nature. 435: 891 pdf

Roze D, Rousset F & Michalakis Y (2005) Germline bottlenecks, biparental inheritance and selection on mitochondrial variants: a two-level selection model. Genetics. 170: 1385-1399 pdf

Agnew P, Berticat C, Bedhomme S, Sidobre C & Michalakis Y (2004) Parasitism increases and decreases the costs of insecticide resistance in mosquitoes. Evolution. 58: 579-586 pdf

Bedhomme S, Agnew P, Sidobre C & Michalakis Y (2004) Virulence reaction norms across a food gradient. Proceedings of the Royal Society of London, Series B. 271: 739-744 pdf

Michalakis Y & Roze D (2004) Epistasis in RNA viruses. Science. 306: 1492-1493 pdf

Agnew P, Becnel JJ, Ebert D & Michalakis Y (2003) Symbiosis of microsporidia and insects, pp 145-163. In Insect Symbiosis (Ed. Bourtzis K & Miller T) CRC Press LLC, Florida, USA pdf

Bedhomme S, Agnew P, Sidobre C & Michalakis Y (2003) Sex-specific reaction norms to intraspecific larval competition in the mosquito Aedes aegypti. Journal of Evolutionary Biology. 16: 721-730 pdf

Durand P, Michalakis Y, Cestier S, Oury B, Leclerc MC, Tibayrenc M & Renaud F (2003) Significant linkage disequilibrium and high genetic diversity in a population of Plasmodium falciparum from an area (Republic of the Congo) highly endemic for malaria. American Journal of Tropical Medicine and Hygiene. 68: 345-349 pdf

McCoy KD, Boulinier T, Tirard C & Michalakis Y (2003) Host-dependent genetic structure of parasite populations: differential dispersal of seabird tick host races. Evolution. 57: 288-296 pdf

McCoy KD, Tirard C & Michalakis Y (2003) Spatial genetic structure of the ectoparasite Ixodes uriae within breeding cliffs of its colonial seabird host. Heredity. 91: 422-9. pdf

Agnew P, Hide M, Sidobre C & Michalakis Y (2002) A minimalist approach to the effects of density-dependent competition on insect life-history traits. Ecological Entomology. 27: 396-402 pdf

Froissart R, Michalakis Y & Blanc S (2002) Helper component-transcomplementation in the vector transmission of plant viruses. Phytopathology. 92: 576-579 pdf

Gandon S & Michalakis Y (2002) Local adaptation, evolutionary potential and host-parasite coevolution: interactions between migration, mutation, population size and generation time. Journal of Evolutionary Biology. 15: 451-462 pdf

Gandon S, Agnew P & Michalakis Y (2002) Coevolution between parasite virulence and host life-history traits. American Naturalist. 160: 374-388 pdf

McCoy KD, Boulinier T, Schjorring S & Michalakis Y (2002) Local adaptation of the ectoparasite Ixodes uriae to its seabird host. Evolutionary Ecology Research. 4: 441-456 pdf

Agnew P, Holzmuller P, Michalakis Y, Sereno D, Lemesre JL & Renaud F (2001) In vitro growth of Leishmania amazonensis promastigotes resistant to pentamidine is dependent on interactions among strains. Antimicrobial Agents and Chemotherapy. 45: 1928-1929 pdf

McCoy KD, Boulinier T, Tirard C & Michalakis Y (2001) Host specificity of a generalist parasite: genetic evidence of sympatric host races in the seabird tick Ixodues uriae. Journal of Evolutionary Biology. 14: 395-405 pdf

Agnew P, Haussy C & Michalakis Y (2000) Effects of density and larval competition on selected life history traits of Culex pipiens quinquefasciatus (Diptera: Culicidae). Journal of Medical Entomology. 37: 732-735 pdf

Agnew P, Koella JC & Michalakis Y (2000) Host life history responses to parasitism. Microbes and Infection. 2: 891-896 pdf

Gandon S & Michalakis Y (2000) Evolution of parasite virulence against qualitative or quantitative host resistance. Proceedings of the Royal Society of London, Series B. 267: 985-990 pdf

Thomas F, Guégan JF, Michalakis Y & Renaud F (2000) Parasites and host life-history traits: implications for community ecology and species co-existence. International Journal for Parasitology. 30: 669-674 pdf

Thomas F, Poulin R, Guégan JF, Michalakis Y & Renaud F (2000) Are there pros as well as cons to being parasitized? Parasitology Today. 16: 533-536 pdf

Agnew P, Bedhomme S, Haussy C & Michalakis Y (1999) Age and size at maturity of the mosquito Culex pipiens infected by the microsporidian parasite Vavraia culicis. Proceedings of the Royal Society of London, Series B. 266: 947-952 pdf

Gandon S & Michalakis Y (1999) Evolutionarily stable dispersal rate in a metapopulation with extinctions and kin competition. Journal of Theoretical Biology. 199: 275-290 pdf

Kaltz O, Gandon S, Michalakis Y & Shykoff JA (1999) Local maladaptation in the anther-smut fungus Microbotryum violaceum to its host plant Silene latifolia: Evidence from a cross-inoculation experiment. Evolution. 53: 395-407 pdf

McCoy K, Boulinier T, Chardine JW, Danchin E & Michalakis Y (1999) Dispersal and distribution of the tick Ixodes uriae within and among seabird host populations: The need for a population genetic approach. Journal of Parasitology. 85: 196-202 pdf

Cattan-Toupance I, Michalakis Y & Neema C (1998) Genetic structure of wild been populations in their South-Andean centre of origin Theoretical and Applied Genetics. 96: 844-851

de Meeûs T, Michalakis Y & Renaud F (1998) Santa Rosalia revisited: or why are there so many kinds of parasites in 'the garden of earthly delights'? Parasitology Today. 14: 10-13 pdf

Estoup A, Rousset F, Michalakis Y, Cornuet JM, Adriamanga M & Guyomard R (1998) Comparative analysis of microsatellite and allozyme markers: a case study investigating microgeographic differentiation in brown trout (Salmo trutta). Molecular Ecology. 7: 339-353

Koella JC, Agnew P & Michalakis Y (1998) Coevolutionary interactions between host life histories and parasite life cycles. Parasitology. 116: S45-S55

Otto SP & Michalakis Y (1998) The evolution of recombination in changing environments Trends in Ecology and Evolution. 13: 145-151

Ravel C, Michalakis Y & Charmet G (1997) The effect of imperfect transmission on the frequency of mutualistic seed-borne endophytes in natural populations of grasses Oikos. 80: 18-24 pdf

Sicard D, Buchet S, Michalakis Y & Neema C (1997) Genetic variability of Colletotrichum lindemuthianum in wild populations of common bean Plant Pathology. 46: 355-365

Sicard D, Michalakis Y, Dron M & Neema C (1997) Genetic diversity and pathogenic variation of Colletorichum lindemuthianum in the three centres of diversity of its host, Phaseolus vulgaris. Phytopathology. 87: 807-813

Gandon S & Michalakis Y (1996) Temporal variability and local adaptation. Trends in Ecology and Evolution. 11: 431

Gandon S, Capowiez Y, Dubois Y, Michalakis Y & Olivieri I (1996) Local adaptation and gene-for-gene coevolution in a metapopulation model. Proceedings of the Royal Society of London, Series B. 263: 1003-1009

Michalakis Y & Excoffier L (1996) A generic estimation of population subdivision using distances between alleles with special reference for microsatellite loci. Genetics. 142: 1061-1064 pdf

Michalakis Y & Slatkin M (1996) Interaction of selection and recombination in the fixation of negative-epistatic genes. Genetical Research. 67: 257-269 pdf

Michalakis Y & Veuille M (1996) Length variation of CAG/CAA trinucleotide repeats in natural populations of Drosophila melanogaster and its relation to the recombination rate. Genetics. 143: 1713-1725 pdf

Sorci G, Clobert J & Michalakis Y (1996) Cost of reproduction and cost of parasitism in the common lizard, Lacerta vivipara. Oikos. 76: 121-130

Olivieri I, Michalakis Y & Gouyon PH (1995) Metapopulation genetics and the evolution of dispersal. American Naturalist. 146: 202-228 pdf

Massot M, Clobert J, Chamon A & Michalakis Y (1994) Vertebrate natal dispersal - the problem of non-independence of siblings. Oikos. 70: 172-176

Michalakis Y & Hochberg ME (1994) Parasitic effects on host life-history traits - a review of recent studies. Parasite. 1: 291-294

de Meeûs T, Michalakis Y, Renaud F & Olivieri I (1993) Polymorphism in heterogenious environments, evolution of habitat selection and sympatric speciation - soft and hard selection models. Evolutionary Ecology. 7: 175-198 pdf

Michalakis Y & Olivieri I (1993) The influence of local extinctions on the probability of fixation of chromosomal rearrangements. Journal of Evolutionary Biology. 6: 153-170 pdf

Michalakis Y, Derancort F, Noel V & Espiau C (1993) A 1st estimation of the mating system of Onopordum illyricum (L.) and its relevance to the invasion of Australia. Acta Oecologia. 14: 539-545 pdf

Michalakis Y, Sheppard AW, Noel V & Olivieri I (1993) Population structure of a herbivorous insect and its host-plant on a microgeographic scale. Evolution. 47: 1611-1616 pdf

Hochberg ME, Michalakis Y & de Meeûs T (1992) Parasitism as a constraint on the rate of life-history evolution. Journal of Evolutionary Biology. 5: 491-504 pdf

Michalakis Y, Briese DT & Sheppard AW (1992) The taxonomic status of Larinus cynarae F. and Larinus latus Herbst (Coleoptera, Curculionidae), and its implications for the biological control of Onopordum (Asteraceae, Cardueae) in Australia Biocontrol Science and Technology. 2: 275-280

Michalakis Y, Olivieri I, Renaud F & Raymond M (1992) Pleiotropic action of parasites - how to be good for the host. Trends in Ecology and Evolution. 7: 59-62 pdf