Surname : CHOISY
Name : Marc
Team :
SEE
Grade : CRCN
Email address : This email address is being protected from spambots. You need JavaScript enabled to view it.
Locality : Vietnam
Employer : IRD
Theme : Population dynamics, epidemiology, spatial dynamaics, interactions among diseases and vaccine policies, extinctions
Publications :
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Calvez E, Pommelet V, Somlor S, Pompon J, Viengphouthong S, Bounmany P, Chindavong TA, Xaybounsou T, Prasayasith P, Keosenhom S, Brey PT, Telle O, Choisy M, Marcombe S, Grandadam M (2020) Trends of the dengue serotype-4 circulation with epidemiological, phylogenetic, and entomological insights in Lao PDR between 2015 and 2019. Pathogens 9: 728 doi |
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Carrique-Mas JJ, Choisy M, Cuong NV, Thwaites G, Baker S (2020) An estimation of total antimicrobial usage in humans and animals in Vietnam. Antimicrobial Resistance and Infection Control 9: 16 doi |
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Van NTB, Yen NTP, Nhung NT, Cuong NV, Kiet BT, Hoang NV, Hien VB, Chansiripornchai N, Choisy M, Ribas A, Campbell J, Thwaites G, Carrique-Mas J (2020) Characterization of viral, bacterial, and parasitic causes of disease in small-scale chicken flocks in the Mekong Delta of Vietnam. Poultry Science 99: 783-790 doi |
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Carrique-Mas J, Van NTB, Cuong NV, Truong BD, Kiet BT, Thanh PTH, Lon NN, Giao VTQ, Hien VB, Padungtod P, Choisy M, Setyawan E, Rushton J, Thwaites G (2019) Mortality, disease and associated antimicrobial use in commercial small-scale chicken flocks in the Mekong delta of Vietnam. Preventive Veterinary Medicine 165: 15-22 doi |
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Choisy M, Cuong NV, Bao TD, Kiet BT, Hien BV, Thu HV, Chansiripornchai N, Setyawan E, Thwaites G, Rushton J, Carrique-Mas J (2019) Assessing antimicrobial misuse in small-scale chicken farms in Vietnam from an observational study. BMC Veterinary Research 15: 206 doi |
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Choisy M, Tung TS, Diep NTN, Hien NT, Le MQ, Thai PQ, Duong TN, Anh DD, Horby PW, Boni MF, Bryant J, Lewycka SO, Nadjm B, van Doorn HR, Wertheim HFL (2019) Sero-prevalence surveillance to predict vaccine-preventable disease outbreaks; a lesson from the 2014 measles epidemic in northern Vietnam. Open Forum Infectious Diseases 6: UNSP ofz030 doi |
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Cuong NV, Phu DH, Van NTB, Truong BD, Kiet BT, Hien BV, Thu HTV, Choisy M, Padungtod P, Thwaites G, Carrique-Mas J (2019) High-resolution monitoring of antimicrobial consumption in Vietnamese small-scale chicken farms highlights discrepancies between study metrics. Frontiers in Veterinary Science 6: 174 doi |
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Dung VTV, Nga DTT, Rydell U, Nilsson LE, Olson L, Larsson M, Hanberger H, Choisy M, Trinh DT, van Doorn HR, Kinh NV, Trung NV, Wertheim HFL, Consortium VINARES (2019) Antimicrobial susceptibility testing and antibiotic consumption results from 16 hospitals in Viet Nam: the VINARES project 2012-2013. Journal of Global Antimicrobial Resistance 18: 269-278 doi |
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Trung NV, Hoi L, Dien VM, Huong DT, Hoa TM, Lien VN, Luan V, Lewycka SO, Choisy M, Bryant JE, Nadjm B, Van Doorn HR, Richards AL, Van Kinh N (2019) Clinical manifestations and molecular diagnosis of scrub typhus and murine typhus Vietnam, 2015-2017. Emerging Infectious Diseases 25: 633-641 doi |
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Abbate JL, Ezenwa VO, Guégan JF, Choisy M, Nacher M, Roche B (2018) Disentangling complex parasite interactions: protection against cerebral malaria by one helminth species is jeopardized by co-infection with another. PLoS Neglected Tropical Diseases 12: e0006483 doi |
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Ho NT, Thompson C, Nhan LNT, Van HMT, Dung NT, My PI, Quang VM, Minh NNQ, Tuan IA, Hung NT, Tuan HM, Chau NVV, Wolbers M, Thwaites GE, Choisy M, Baker S (2018) Retrospective analysis assessing the spatial and temporal distribution of paediatric acute respiratory tract infections in Ho Chi Minh city, Vietnam. BMJ Open 8: e016349 doi |
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Lai SJ, Johansson MA, Yin WW, Wardrop NA, van Panhuis WG, Wesolowski A, Kraemer MUG, Bogoch II, Kain D, Findlater A, Choisy M, Huang ZJ, Mu D, Li Y, He YN, Chen QL, Yang J, Khan K, Tatem AJ, Yu HJ (2018) Seasonal and interannual risks of dengue introduction from South-East Asia into China, 2005-2015. PLoS Neglected Tropical Diseases 12: e0006743 doi |
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Lefèvre T, Ohm J, Dabire KR, Cohuet A, Choisy M, Thomas MB, Cator L (2018) Transmission traits of malaria parasites within the mosquito: genetic variation, phenotypic plasticity, and consequences for control. Evolutionary Applications 11: 456-469 doi |
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Delabouglise A, Choisy M, Phan TD, Antoine-Moussiaux N, Peyre M, Vu TD, Pfeiffer DU, Fournie G (2017) Economic factors influencing zoonotic disease dynamics: demand for poultry meat and seasonal transmission of avian influenza in Vietnam. Scientific Reports 7: 5905 doi |
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Boithias L, Choisy M, Souliyaseng N, Jourdren M, Quet F, Buisson Y, Thammahacksa C, Silvera N, Latsachack K, Sengtaheuanghoung O, Pierret A, Rochelle-Newall E, Becerra S, Ribolzi O (2016) Hydrological regime and water shortage as drivers of the seasonal incidence of diarrheal diseases in a tropical montane environment. PLoS Neglected Tropical Diseases 10: e0005195 doi |
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Chazel M, Marchandin H, Keck N, Terru D, Carriere C, Ponsoda M, Jacomo V, Panteix G, Bouzinbi N, Bañuls AL, Choisy M, Solassol J, Aubry A, Godreuil S (2016) Evaluation of the SLOMYCO sensititre (R) panel for testing the antimicrobial susceptibility of Mycobacterium marinum isolates. Annals of Clinical Microbiology and Antimicrobials 15: 30 doi |
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Nguyen VAT, Bañuls AL, Tran THT, Pham KLT, Nguyen TS, Nguyen HV, Nguyen NLT, Dang DA, Marks GB, Choisy M (2016) Mycobacterium tuberculosis lineages and anti-tuberculosis drug resistance in reference hospitals across Viet Nam. BMC Microbiology 16: 167 doi |
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Peyre M, Choisy M, Sobhy H, Kilany WH, Gely M, Tripodi A, Dauphin G, Saad M, Roger F, Lubroth J, Jobre Y (2016) Added value of avian influenza (H5) day-old chick vaccination for disease control in Egypt. Avian Diseases 60: 245-252 |
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Thuy DM, Peacock TP, Bich VTN, Fabrizio T, Hoang DN, Tho ND, Diep NT, Nguyen M, Hoa LNM, Trang HTT, Choisy M, Inui K, Newman S, Trung NV, van Doorn R, To TL, Iqbal M, Bryant JE (2016) Prevalence and diversity of H9N2 avian influenza in chickens of northern Vietnam, 2014. Infection, Genetics and Evolution 44: 530-540 doi |
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Hoa LNM, Bryant JE, Choisy M, Nguyet LA, Bao NT, Trang NH, Chuc NTK, Toan TK, Saito T, Takemae N, Horby P, Wertheim H, Fox A (2015) Population susceptibility to a variant swine-origin influenza virus A(H3N2) in Vietnam, 2011-2012. Epidemiology and Infection 143: 2959-2964 doi |
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Thai PQ, Choisy M, Duong TN, Thiem VD, Yen NT, Hien NT, Weiss DJ, Boni MF, Horby P (2015) Seasonality of absolute humidity explains seasonality of influenza-like illness in Vietnam. Epidemics 13: 65-73 doi |
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Trang NV, Choisy M, Nakagomi T, Chinh NTM, Doan YH, Yamashiro T, Bryant JE, Nakagomi O, Anh DD (2015) Determination of cut-off cycle threshold values in routine RT-PCR assays to assist differential diagnosis of norovirus in children hospitalized for acute gastroenteritis. Epidemiology and Infection 143: 3292-3299 doi |
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van Panhuis WG, Choisy M, Xiong X, Chok NS, Akarasewi P, Iamsirithaworn S, Lam SK, Chong CK, Lam FC, Phommasak B, Vongphrachanh P, Bouaphanh K, Rekol H, Hien NT, Thai PQ, Duong TN, Chuang JH, Liu YL, Ng LC, Shi Y, Tayag EA, Roque VG, Suy LLL, Jarman RG, Gibbons RV, Velasco JMS, Yoon IK, Burke DS, Cummings DAT (2015) Region-wide synchrony and traveling waves of dengue across eight countries in Southeast Asia. Proceedings of the National Academy of Sciences USA 112: 13069-13074 doi |
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Viet TL, Choisy M, Bryant JE, Trong DV, Quang TP, Horby P, Tran HN, Kieu HTT, Vu TN, Van KN, Quynh ML, Wertheim HFL (2015) A dengue outbreak on a floating village at Cat Ba island in Vietnam. BMC Public Health 15: 940 doi |
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Choisy M & de Roode JC (2014) The ecology and evolution of animal medication: genetically fixed response versus phenotypic plasticity. American Naturalist. 184: S31-S46 doi |
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Do TTT, Martens P, Luu NH, Wright P & Choisy M (2014) Climatic-driven seasonality of emerging dengue fever in Hanoi, Vietnam. BMC Public Health. 14: 1078 doi
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Roche B, Broutin H, Choisy M, Godreuil S, Constantin de Magny G, Chevaleyre Y, Zucker JD, Breban R, Cazelles B & Simard F (2014) The niche reduction approach: an opportunity for optimal control of infectious diseases in low-income countries? BMC Public Health. 14: 753 doi |
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Berngruber TW, Froissart R, Choisy M & Gandon S (2013) Evolution of virulence in emerging epidemics. PLoS Pathogens. 9: e1003209 doi |
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Gascuel F, Choisy M, Duplantier JM, Debarre F & Brouat C (2013) Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus. PLoS Computational Biology. 9: 1003039 doi |
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Vale PF, Choisy M & Little TJ (2013) Host nutrition alters the variance in parasite transmission potential. Biology Letters. 9: 1145 doi
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Broutin V, Bañuls AL, Aubry A, Keck N, Choisy M, Bernardet JF, Michel C, Raymond JC, Libert C, Barnaud A, Stragier P, Portaels F, Terru D, Belon C, Dereure O, Gutierrez C, Boschiroli ML, Van De Perre P, Cambau E & Godreuil S (2012) Genetic diversity and population structure of Mycobacterium marinum: new insights into host and environmental specificities. Journal of Clinical Microbiology. 50: 3627-3634 doi |
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Choisy M & Rohani P (2012) Changing spatial epidemiology of pertussis in continental USA. Proceedings of the Royal Society of London, Series B. 279: 4574-4581 doi
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Gimonneau G, Pombi M, Choisy M, Morand S, Dabire RK & Simard F (2012) Larval habitat segregation between the molecular forms of the mosquito Anopheles gambiae in a rice field area of Burkina Faso, West Africa. Medical and Veterinary Entomology. 26: 9-17 doi |
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Nguyen TVA, Choisy M, Nguyen DH, Thanh HTT, Kim LTP, Phuong TTD, Philippe J, Nguyen TS, Ho ML, Tran SV, Bañuls AL & Dang DA (2012) High prevalence of Beijing and EAI4-VNM genotypes among M. tuberculosis isolates in Northern Vietnam: sampling effect, rural and urban disparities. PLoS One. 7: e45553 doi |
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Vale PF, Choisy M, Froissart R, Sanjuan R & Gandon S (2012) The distribution of mutational fitness effects of phage phi X174 on different hosts. Evolution. 66: 3495-3507 doi |
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Choisy M & de Roode JC (2010) Mixed infections and the evolution of virulence: effects of resource competition, parasite plasticity, and impaired host immunity. American Naturalist. 175: E105-E118 |
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Faye B, Bañuls, AL, Bucheton B, Dione MM, Bassanganam O, Hide M, Dereure J, Choisy M, Ndiaye JL, Konaté O, Claire M, Senghor MW, Faye MN, Sy I, Niang AA, Molez JF, Victoir K, Marty P, Delaunay P, Knecht R, Mellul S, Diedhiou S & Gaye O (2010) Canine visceral leishmaniasis caused by Leishmania infantum in Senegal: risk of emergence in humans? Microbes and Infection. 14: 1219-1225 pdf
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Godreuil S, Renaud F, Choisy M, Depina JJ, Garnotel E, Morillon M, Van de Perre P & Bañuls AL (2010) Highly structured genetic diversity of the Mycobacterium tuberculosis population in Djibouti. Clinical Microbiology and Infection. 16: 1024-1026 |
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Prugnolle F & Chevillon C (2009) Evolution adaptative des pathogènes, identification des mécanismes et conséquences épidémiologiques. In Introduction à l'épidémiologie intégrative des maladies infectieuses et parasitaire. (Eds. Guégan J & Choisy M). pp. 311-345. de Boeck. |
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Prugnolle F, Choisy M & de Meeûs T (2008) CLONALITY V.0.4: a randomization-based program to test for heterozygosity-genet size relationships in clonal organisms. Molecular Ecology Resources. 8: 954-956 |
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Choisy M, Guégan JF & Rohani P (2007) Mathematical Modeling of Infectious Diseases Dynamics. In Encyclopedia of infectious diseases: Modern methodologies (Ed. Tibayrenc M). John Wiley & Sons,Inc.
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Nettle D, Grace JB, Choisy M, Cornell HV, Guégan JF & Hochberg ME (2007) Cultural diversity, economic development and societal instability. PLoS One. 9: e929
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Choisy M & Rohani P (2006)
Harvesting can increase severity of wildlife disease epidemics. Proceedings of the Royal Society of London, Series B. 273: 2025-2034 pdf
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Choisy M, Guégan JF & Rohani P (2006) Dynamics of infectious diseases and pulse vaccination: teasing apart the embedded resonance effects. Physica D. 223: 26-35 pdf
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Choisy M, Hide M, Bañuls AL & Guégan JF (2004) Rocking the curve. Trends in Microbiology 12: 534-536 pdf
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Choisy M, Prugnolle F & Cornuet J (2004) Estimating admixture proportions with microsatellites: comparison of methods based on simulated data. Molecular Ecology. 13: 955-968 pdf
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Choisy M, Woelk CH, Guégan J & Robertson D L (2004) Comparative study of adaptive molecular evolution in different human immunodeficiency virus groups and subtypes.
Journal of Virology. 78: 1962-1970. [- erratum -] pdf
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Constantin de Magny G, Choisy M (2004) Mathematical and technological tools: when cholera meets the satellite. In Biodiversity and Global Change. Eds R Barbault, B Chevassus-au-Louis. pp 126-128. ADF/MAE editions |
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Fargette D, Pinel A, Abubakar Z, Traore O, Brugidou C, Fatogoma S, Hebrard E, Choisy M, Sere Y, Fauquet C & Konate G (2004) Inferring the evolutionary history of rice yellow mottle virus from genomic, phylogenetic, and phylogeographic studies.
Journal of Virology. 78: 3252-3261 pdf
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Prugnolle F, Choisy M, Theron A, Durand P, & de Meeûs T (2004) Sex-specific correlation between heterozygosity and clone size in the trematode Schistosoma mansoni. Molecular Ecology. 13: 2859-2864 pdf
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Choisy M, Brown SP, Lafferty KD & Thomas F (2003) Evolution of trophic transmission in parasites: why add intermediate hosts? The American Naturalist. 162: 172-181 pdf
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