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Surname : CHEVENET
Name : François
Team : GeneSys
Grade : IR1
Email address : This email address is being protected from spambots. You need JavaScript enabled to view it.
Employer : IRD
Theme : Bio-informatics and visual presentation of data

Publications :

Castel G, Chevenet F, Razzauti M, Murri S, Marianneau P, Cosson JF, Tordo N, Plyusnin (2019) Phylogeography of Puumala orthohantavirus in Europe. Viruses 11: 679 doi

Chevenet F, Castel G, Jousselin E, Gascuel O (2019) Pastview: a user-friendly interface to explore ancestral scenarios. BMC Evolutionary Biology 19: 163 doi

Berry V, Chevenet F, Doyon JP, Jousselin E (2018) A geography-aware reconciliation method to investigate diversification patterns in host/parasite interactions. Molecular Ecology Resources 18: 1173-1184 doi

Duchemin W, Gence G, Chifolleau AMA, Arvestad L, Bansal MS, Berry V, Boussau B, Chevenet F, Comte N, Davin AA, Dessimoz C, Dylus D, Hasic D, Mallo D, Planel R, Posada D, Scornavacca C, Szollosi G, Zhang LX, Tannier E, Daubin V (2018) RecPhyloXML: a format for reconciled gene trees. Bioinformatics 34: 3646-3652 doi

Chevenet F, Doyon JP, Scornavacca C, Jacox E, Jousselin E, Berry V (2016) SylvX: a viewer for phylogenetic tree reconciliations. Bioinformatics 32: 608-613 doi

Mourad R, Chevenet F, Dunn DT, Fearnhill E, Delpech V, Asboe D, Gascuel O, Hue S (2015) A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK. AIDS 29: 1917-1925 doi

Fiorini N, Lefort V, Chevenet F, Berry V & Chifolleau AMA (2014) CompPhy: a web-based collaborative platform for comparing phylogenies. BMC Evolutionary Biology. 14: 253 doi

Chevenet F, Jung M, Peeters M, de Oliveira T & Gascuel O (2013) Searching for virus phylotypes. Bioinformatics. 29: 561-570 doi

El Baidouri F, Diancourt L, Berry V, Chevenet F, Pratlong F, Marty P & Ravel C (2013) Genetic structure and evolution of the Leishmania genus in Africa and Eurasia: what does MLSA tell us. PLoS Neglected Tropical Diseases. 7: e2255 doi

Jousselin E, Cruaud A, Genson G, Chevenet F, Foottit RG & Coeur d'Acier A (2013) Is ecological speciation a major trend in aphids? Insights from a molecular phylogeny of the conifer-feeding genus Cinara. Frontiers in Zoology. 10: 56 doi

Chevenet F, Croce O, Hebrard M, Christen R & Berry V (2010) ScripTree: scripting phylogenetic graphics. Bioinformatics. 26: 1125-1126

Croce O, Chevenet F & Christen R (2008) OligoHeatMap (OHM): an online tool to estimate and display hybridizations of oligonucleotides onto DNA sequences. Nucleic Acids Research. 36: W154-W156

Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM & Gascuel O (2008) Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Research. 36: W465-W469 [- phylogeny.fr -]

Godreuil S, Torrea G, Terru D, Chevenet F, Diagbouga S, Supply P, van de Perre P, Carriere C & Bañuls AL (2007) First molecular epidemiology study of Mycobacterium tuberculosis in Burkina Faso. Journal of Clinical Microbiology. 45: 921-927 pdf

Baudot A, Martin D, Mouren P, Chevenet F, Guenoche A, Jacq B & Brun C (2006) PRODISTIN Web Site: a tool for the functional classification of proteins from interaction networks. Bioinformatics. 22: 248-250

Biron DG, Brun C, Lefèvre T, Lebarbenchon C, Loxdale HD, Chevenet F, Brizard JP & Thomas F (2006) The pitfalls of proteomics experiments without the correct use of bioinformatics tools. Proteomics. 6: 5577-5596 pdf

Chevenet F, Brun C, Bañuls AL, Jacq B & Christen R (2006) TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics. 7: 439 pdf

Simon O, Chevenet F, Williams T, Caballero P & Lopez-Ferber M (2005) Physical and partial genetic map of Spodoptera frugiperda nucleopolyhedrovirus (SfMNPV) genome. Virus Genes. 30: 403-417

Brun C, Chevenet F, Wojcik J, Guenoche A & Jacq B (2004) Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network. Genome Biology. 5: R6

Brun C, Chevenet F, Martin D, Wojcik J, Guenoche A & Jacq B (2003) Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network. Genome Biology. 5: R6

Thioulouse J & Chevenet F (1996) NetMul, a World-Wide Web user interface for multivariate analysis software. Computational Statistics & Data Analysis. 21: 369-372