Votre navigateur est trop ancien pour afficher correctement ce site. Ceci en est la version simplifiée.

'MiVEGEC' publications by members of the group since 2005:

| 2005 | | 2006 | | 2007 | | 2008 | | 2009 | | 2010 | | 2011 | | 2012 | | 2013 | | 2014 | | 2015 | | 2016 | | 2017 | | 2018 | | 2019 |


Carrique-Mas J, Van NTB, Cuong NV, Truong BD, Kiet BT, Thanh PTH, Lon NN, Giao VTQ, Hien VB, Padungtod P, Choisy M, Setyawan E, Rushton J, Thwaites G (2019) Mortality, disease and associated antimicrobial use in commercial small-scale chicken flocks in the Mekong delta of Vietnam. Preventive Veterinary Medicine 165: 15-22 doi

Elguero J, Elguero E (2019) About the statistical analysis of theoretically calculated values. Structural Chemistry 30: 283-287 doi

Groc S, Abbate JL, Le Gal F, Gerber A, Tuaillon E, Albert JL, Nkoghe D, Leroy EM, Roche B, Becquart P (2019) High prevalence and diversity of hepatitis B and hepatitis delta virus in Gabon. Journal of Viral Hepatitis 26: 170-182 doi

Laval G, Peyregne S, Zidane N, Harmant C, Renaud F, Patin E, Prugnolle F, Quintana-Murci L (2019) Recent adaptive acquisition by African rainforest hunter-gatherers of the late pleistocene sickle-cell mutation suggests past differences in malaria exposure. American Journal of Human Genetics 104: 553-561 doi

Liégeois F, Eymard-Duvernay S, Boyer S, Maradan G, Kouanfack C, Domyeum J, Boyer V, Mpoudi-Ngole E, Spire B, Delaporte E, Vidal L, Kuaban C, Laurent C, for the Evolcam study group (2019) Heterogeneity of virological suppression in the national antiretroviral programme of cameroon (ANRS 12288 EVOLCAM). HIV Medicine 20: 38-46 doi

Maes P, Amarasinghe GK, Ayllon MA, Basler CF, Bavari S, Blasdell KR %Briese T, Brown PA, Bukreyev A, Balkema-Buschmann A, Buchholz UJ, Chandran K, Crozier I, de Swart RL, Dietzgen RG, Dolnik O, Domier LL, Drexler JF, Durrwald R, Dundon WG, Duprex WP, Dye JM, Easton AJ, Fooks AR, Formenty PBH, Fouchier RAM, Freitas-Astua J, Ghedin E, Griffiths A, Hewson R, Horie M, Hurwitz JL, Hyndman TH, Jiang D, Kobinger GP, Kondo H, Kurath G, Kuzmin IV, Lamb RA, Lee B, Leroy EM, Lǐ J, Marzano SYL, Muhlberger E, Netesov SV, Nowotny N, Palacios G, Palyi B, Paweska JT, Payne SL, Rima BK, Rota P, Rubbenstroth D, Simmonds P, Smither S.J, Song Q, Song T, Spann K, Stenglein MD, Stone DM, Takada A, Tesh RB, Tomonaga K, Tordo N, Towner JS, van den Hoogen B, Vasilakis N, Wahl V, Walker PJ, Wang D, Wang LF, Whitfield AE, Williams JV, Ye G, Zerbini FM, Zhang YZ, Kuhn JH (2019) Taxonomy of the order Mononegavirales: second update 2018. Archives of Virology doi

Maes P, Amarasinghe GK, Ayllon MA, Basler CF, Bavari S, Blasdell KR, Briese T, Brown PA, Bukreyev A, Balkema-Buschmann A, Buchholz UJ, Chandran K, Crozier I, de Swart RL, Dietzgen RG, Dolnik O, Domier LL, Drexler JF, Durrwald R, Dundon WG, Duprex WP, Dye JM, Easton AJ, Fooks AR, Formenty PBH, Fouchier RAM, Freitas-Astua J, Ghedin E, Griffiths A, Hewson R, Horie M, Hurwitz JL, Hyndman TH, Jiang D, Kobinger GP, Kondo H, Kurath G, Kuzmin IV, Lamb RA, Lee B, Leroy EM, Li J, Marzano SYL, Muhlberger E, Netesov SV, Nowotny N, Palacios G, Palyi B, Paweska JT, Payne SL, Rima BK, Rota P, Rubbenstroth D, Simmonds P, Smither SJ, Song QS, Song T, Spann K, Stenglein MD, Stone DM, Takada A, Tesh RB, Tomonaga K, Tordo N, Towner JS, van den Hoogen B, Vasilakis N, Wahl V, Walker PJ, Wang D, Wang LF, Whitfield AE, Williams JV, Ye GY, Zerbini FM, Zhang YZ, Kuhn JH (2019) Taxonomy of the order Mononegavirales: second update 2018. Archives of Virology 164: 1233-1244 doi

Mombo IM, Suquet E, Boundenga L, Mveang-Nzoghe A, Maganga-Mboga C, Arnathau C, Sidobre C, Leroy EM, Rougeron V (2019) Detection of novel astroviruses among rodents of Gabon, Central Africa. Infection, Genetics and Evolution 68: 43-46 doi

Murall CL, Jackson R, Zehbe I, Boulle N, Segondy M, Alizon S (2019) Epithelial stratification shapes infection dynamics. PLoS Computational Biology 15: e1006646 doi

Nkili-Meyong AA, Moussavou-Boundzanga P, Labouba I, Koumakpayi IH, Jeannot E, Descorps-Declere S, Sastre-Garau X, Leroy EM, Belembaogo E, Berthet N (2019) Genome-wide profiling of human papillomavirus DNA integration in liquid-based cytology specimens from a Gabonese female population using HPV capture technology. Scientific Reports 9: 1504 doi

Pimenoff VN, Tous S, Benavente Y, Alemany L, Quint W, Bosch FX, Bravo IG, de Sanjose S (2019) Distinct geographic clustering of oncogenic human papillomaviruses multiple infections in cervical cancers: results from a worldwide cross-sectional study. International Journal of Cancer 144: 2478-2488 doi

Sicard A, Pirolles E, Gallet R, Vernerey MS, Yvon M, Urbino C, Peterschmitt M, Gutierrez S, Michalakis Y, Blanc S (2019) A multicellular way of life for a multipartite virus. Elife 8: e43599 doi

Vergne T, Meyer A, Long PT, Elkholly DA, Inui K, Padungtod P, Newman SH, Fournie G, Pfeiffer DU (2019) Optimising the detectability of H5N1 and H5N6 highly pathogenic avian influenza viruses in Vietnamese live-bird markets. Scientific Reports 9: 1031 doi


Abbate JL, Ezenwa VO, Guégan JF, Choisy M, Nacher M, Roche B (2018) Disentangling complex parasite interactions: protection against cerebral malaria by one helminth species is jeopardized by co-infection with another. PLoS Neglected Tropical Diseases 12: e0006483 doi

Alba A, Vázquez AA, Sánchez J, Duval D, Hernández HM, Sabourin E, Vittecoq M, Hurtrez-Boussès S, Gourbal B (2018) Fasciola hepatica-Pseudosuccinea columella interaction: effect of increasing parasite doses, successive exposures and geographical origin on the infection outcome of susceptible and naturally-resistant snails from cuba. Parasites & Vectors 11: 559 doi

Alda P, Lounnas M, Vazquez AA, Ayaqui R, Calvopina M, Celi-Erazo M, Dillon RT, Jarne P, Loker ES, Pareja FCM, Muzzio-Aroca J, Narvaez AO, Noya O, Robles LM, Rodriguez-Hidalgo R, Uribe N, David P, Pointier JP, Hurtrez-Boussès S (2018) A new multiplex PCR assay to distinguish among three cryptic Galba species, intermediate hosts of Fasciola hepatica. Veterinary Parasitology 251: 101-105 doi

Alizon S (2018) Inexpensive research in the golden open-access era. Trends in Ecology & Evolution 33: 301-303 doi

Alizon S, Methot PO (2018) Reconciling pasteur and darwin to control infectious diseases. PLoS Biology 16: e2003815 doi

Amarasinghe GK, Ceballos NG, Banyard AC, Basler CF, Bavari S, Bennett AJ, Blasdell KR, Briese T, Bukreyev A, Cai YY, Calisher CH, Lawson CC, Chandran K, Chapman CA, Chiu CY, Choi KS, Collins PL, Dietzgen RG, Dolja VV, Dolnik O, Domier LL, Durrwald R, Dye JM, Easton AJ, Ebihara H, Echevarria JE, Fooks AR, Formenty PBH, Fouchier RAM, Freuling CM, Ghedin E, Goldberg TL, Hewson R, Horie M, Hyndman TH, Jiang DH, Kityo R, Kobinger GP, Kondo H, Koonin EV, Krupovic M, Kurath G, Lamb RA, Lee B, Leroy EM, Maes P, Maisner A, Marston DA, Mor SK, Muller T, Muhlberger E, Ramirez VMN, Netesov SV, Ng TFF, Nowotny N, Palacios G, Patterson JL, Paweska JT, Payne SL, Prieto K, Rima BK, Rota P, Rubbenstroth D, Schwemmle M, Siddell S, Smither S, Song QS, Song T, Stenglein MD, Stone DM, Takada A, Tesh RB, Thomazelli LM, Tomonaga K, Tordo N, Towner JS, Vasilakis N, Vazquez-Moron S, Verdugo C, Volchkov VE, Wahl V, Walker PJ, Wang D, Wang LF, Wellehan JFX, Wiley MR, Whitfield AE, Wolf YI, Ye GY, Zhang YZ, Kuhn JH (2018) Taxonomy of the order Mononegavirales: update 2018. Archives of Virology 163: 2283-2294 doi

Bagdassarian E, Doceul V, Pellerin M, Demange A, Meyer L, Jouvenet N, Pavio N (2018) The amino-terminal region of hepatitis E virus ORF1 containing a methyltransferase (Met) and a papain-like cysteine protease (PCP) domain counteracts type I interferon response. Viruses 10: 726 doi

Bañuls AL, Nguyen TVA, Nguyen QH, Nguyen TNA, Tran HH, Godreuil S (2018) Antimicrobial resistance: the 70-year arms race between humans and bacteria. In, Ecology and Evolution of Infectious Diseases in low-income countries: Pathogen Control and Public Health Management in Low-Income Countries. Roche B, Broutin H & Simard F (Eds.) Oxford University Press, New York. pp 77-90

Barrows NJ, Campos RK, Liao KC, Prasanth KR, Soto-Acosta R, Yeh SC, Schott-Lerner G, Pompon J, Sessions OM, Bradrick SS, Garcia-Blanco M (2018) Biochemistry and molecular biology of flaviviruses. Chemical Reviews 118: 4448-4482 doi

Biro PA, Garland T, Beckmann C, Ujvari B, Thomas F, Post JR (2018) Metabolic scope as a proximate constraint on individual behavioral variation: effects on personality, plasticity, and predictability. American Naturalist 192: 142-154 doi

Boundenga L, Ngoubangoye B, Mombo IM, Tsoubmou TA, Renaud F, Rougeron V, Prugnolle F (2018) Extensive diversity of malaria parasites circulating in Central African bats and monkeys. Ecology and Evolution 8: 10578-10586 doi

Bourgarel M, Pfukenyi DM, Boue V, Talignani L, Chiweshe N, Diop F, Caron A, Matope G, Missé D, Liégeois F (2018) Circulation of alphacoronavirus, betacoronavirus and paramyxovirus in Hipposideros bat species in Zimbabwe. Infection, Genetics and Evolution 58: 253-257 doi

Caron A, Bourgarel M, Cappelle J, Liégeois F, De Nys HM, Roger F (2018) Ebola virus maintenance: if not (only) bats, what else? Viruses 10: 549 doi

Caron M, Beason G, Padilla C, Makuwa M, Nkoghe D, Leroy E, Kazanji M (2018) Revisiting human T-cell lymphotropic virus types 1 and 2 infections among rural population in Gabon, Central Africa thirty years after the first analysis. PLoS Neglected Tropical Diseases 12: e0006833 doi

Cassan C, Diagne CA, Tatard C, Gauthier P, Dalecky A, Ba K, Kane M, Niang Y, Diallo M, Sow A, Brouat C, Bañuls AL (2018) Leishmania major and Trypanosoma lewisi infection in invasive and native rodents in Senegal. PLoS Neglected Tropical Diseases 12: e0006615 doi

Chu DKW, Hui KPY, Perera RAPM, Miguel E, Niemeyer D, Zhao JC, Channappanavar R, Dudas G, Oladipo JO, Traore A, Fassi-Fihri O, Ali A, Demissie GF, Muth D, Chan MCW, Nicholls JM, Meyerholz DK, Kuranga SA, Mamo G, Zhou ZQ, So RTY, Hemida MG, Webby RJ, Roger F, Rambaut A, Poon LLM, Perlman S, Drosten C, Chevalier V, Peiris M (2018) MERS coronaviruses from camels in Africa exhibit region-dependent genetic diversity. Proceedings of the National Academy of Sciences USA 115: 3144-3149 doi

Dawson EH, Bailly TPM, Dos Santos J, Moreno C, Devilliers M, Maroni B, Sueur C, Casali A, Ujvari B, Thomas F, Montagne J, Mery F (2018) Social environment mediates cancer progression in Drosophila. Nature Communications 9: 3574 doi

Diop F, Vial T, Ferraris P, Wichit S, Bengue M, Hamel R, Talignani L, Liégeois F, Pompon J, Yssel H, Marti G, Missé D (2018) Zika virus infection modulates the metabolomic profile of microglial cells. PLoS One 13: e0206093 doi

Elguero E, Alkorta I, Elguero J (2018) A theoretical study of the properties of ninety-two "aromatic" six-membered rings including benzene, azines, phosphinines and azaphosphinines. Heteroatom Chemistry 29: e21441 doi

Falzon LC, Lechner I, Chantziaras I, Collineau L, Courcoul A, Filippitzi ME, Laukkanen-Ninios R, Peroz C, Ferreira JP, Postma M, Prestmo PG, Phythian CJ, Sarno E, Vanantwerpen G, Vergne T, Grindlay DJC, Brennan ML (2018) Quantitative outcomes of a one health approach to study global health challenges. Ecohealth 15: 209-227 doi

Francois S, Filloux D, Frayssinet M, Roumagnac P, Martin DP, Ogliastro M, Froissart R (2018) Increase in taxonomic assignment efficiency of viral reads in metagenomic studies. Virus Research 244: 230-234 doi

Gallet R, Fabre F, Thebaud G, Sofonea MT, Sicard A, Blanc S, Michalakis Y (2018) Small bottleneck size in a highly multipartite virus during a complete infection cycle. Journal of Virology 92: e00139-18 doi

Gallet R, Froissart R, Ravigne V (2018) Experimental demonstration of the impact of hard and soft selection regimes on polymorphism maintenance in spatially heterogeneous environments. Evolution 72: 1677-1688 doi   reprint

Gallet R, Michalakis Y, Blanc S (2018) Vector-transmission of plant viruses and constraints imposed by virus-vector interactions. Current Opinion in Virology 33: 144-150 doi

Garcia M, Alout H, Diop F, Damour A, Bengue M, Weill M, Missé D, Leveque N, Bodet C (2018) Innate immune response of primary human keratinocytes to West Nile virus infection and its modulation by mosquito saliva. Frontiers in Cellular and Infection Microbiology 8: 387 doi

Gidoin C, Ujvari B, Thomas F, Roche B (2018) How is the evolution of tumour resistance at organ-scale impacted by the importance of the organ for fitness? BMC Evolutionary Biology 18: 185 doi

Gilabert A, Otto TD, Rutledge GG, Franzon B, Ollomo B, Arnathau C, Durand P, Moukodoum ND, Okouga AP, Ngoubangoye B, Makanga B, Boundenga L, Paupy C, Renaud F, Prugnolle F, Rougeron V (2018) Plasmodium vivax-like genome sequences shed new insights into Plasmodium vivax biology and evolution. PLoS Biology 16: e2006035 doi

Giraudeau M, Sepp T, Ujvari B, Ewald PW, Thomas F (2018) Human activities might influence oncogenic processes in wild animal populations. Nature Ecology & Evolution 2: 1065-1070 doi

Happel AU, Barnabas SL, Froissart R, Passmore JS (2018) Weighing in on the risks and benefits of probiotic use in HIV-infected and immunocompromised populations. Beneficial Microbes 9: 239-246 doi

Jacqueline C, Abbate JL, Sorci G, Guégan JF, Thomas F, Roche B (2018) The macroecology of cancer incidences in humans is associated with large-scale assemblages of endemic infections. Infection, Genetics and Evolution 61: 189-196 doi

Jacqueline C, Bonnefoy N, Charriere GM, Thomas F, Roche B (2018) Personal history of infections and immunotherapy: unexpected links and possible therapeutic opportunities. Oncoimmunology 7: e1466019 doi

Kamiya T, Mideo N, Alizon S (2018) Coevolution of virulence and immunosuppression in multiple infections. Journal of Evolutionary Biology 31: 995-1005 doi

Lai SJ, Johansson MA, Yin WW, Wardrop NA, van Panhuis WG, Wesolowski A, Kraemer MUG, Bogoch II, Kain D, Findlater A, Choisy M, Huang ZJ, Mu D, Li Y, He YN, Chen QL, Yang J, Khan K, Tatem AJ, Yu HJ (2018) Seasonal and interannual risks of dengue introduction from South-East Asia into China, 2005-2015. PLoS Neglected Tropical Diseases 12: e0006743 doi

Lefèvre T, Ohm J, Dabire KR, Cohuet A, Choisy M, Thomas MB, Cator L (2018) Transmission traits of malaria parasites within the mosquito: genetic variation, phenotypic plasticity, and consequences for control. Evolutionary Applications 11: 456-469 doi

Lekana-Douki SE, Behillil S, Enouf V, Leroy EM, Berthet N (2018) Detection of human bocavirus-1 in both nasal and stool specimens from children under 5 years old with influenza-like illnesses or diarrhea in Gabon. BMC Research Notes 11: 495 doi

Liao KC, Chuo V, Ng WC, Neo SP, Pompon J, Gunaratne J, Ooi EE, Garcia-Blanco M (2018) Identification and characterization of host proteins bound to dengue virus 3 ' UTR reveal an antiviral role for quaking proteins. RNA 24: 803-814 doi

Lievens EJP, Perreau J, Agnew P, Michalakis Y, Lenormand T (2018) Decomposing parasite fitness reveals the basis of specialization in a two-host, two-parasite system. Evolution Letters 2: 390-405 doi

Lounnas M, Correa AC, Alda P, David P, Dubois MP, Calvopina M, Caron Y, Celi-Erazo M, Dung BT, Jarne P, Loker ES, Noya O, Rodriguez-Hidalgo R, Toty C, Uribe N, Pointier JP, Hurtrez-Boussès S (2018) Population structure and genetic diversity in the invasive freshwater snail Galba schirazensis (Lymnaeidae). Canadian Journal of Zoology 96: 425-435 doi

Maganga GD, Labouba I, Ngoubangoye B, Nkili-Meyong AA, Ondo DO, Leroy EM, Berthet N (2018) Molecular characterization of complete genome of a canine distemper virus associated with fatal infection in dogs in Gabon, Central Africa. Virus Research 247: 21-25 doi

Makiala-Mandanda S, Ahuka-Mundeke S, Abbate JL, Pukuta-Simbu E, Nsio-Mbeta J, Berthet N, Leroy EM, Becquart P, Muyembe-Tamfum JJ (2018) Identification of dengue and chikungunya cases among suspected cases of yellow fever in the Democratic Republic of the Congo. Vector-Borne and Zoonotic Diseases 18: 364-370 doi

Mellor KC, Meyer A, Elkholly DA, Fournie G, Long PT, Inui K, Padungtod P, Gilbert M, Newman SH, Vergne T, Pfeiffer DU, Stevens KB (2018) Comparative epidemiology of highly pathogenic avian influenza virus H5N1 and H5N6 in Vietnamese live bird markets: spatiotemporal patterns of distribution and risk factors. Frontiers in Veterinary Science 5: 51 doi

Mena M, Taberna M, Tous S, Marquez S, Clavero O, Quiros B, Lloveras B, Alejo M, Leon X, Quer M, Bague S, Mesia R, Nogues J, Goma M, Aguila A, Bonfill T, Blazquez C, Guix M, Hijano R, Torres M, Holzinger D, Pawlita M, Pavon MA, Bravo IG, de Sanjose S, Bosch FX, Alemany L (2018) Double positivity for HPV-DNA/p16(ink4a) is the biomarker with strongest diagnostic accuracy and prognostic value for human papillomavirus related oropharyngeal cancer patients. Oral Oncology 78: 137-144 doi

Mengual-Chuliá B, Wibbelt G, Gottschling M, Bravo IG (2018) Two novel, distantly related papillomaviruses isolated from healthy skin of the Timor deer (Rusa timorensis). Microbiology Resource Announcements 6: e00505-18 doi

Mengual-Chuliá B, Wittstatt U, Olias P, Bravo IG (2018) Genome sequences of two novel papillomaviruses isolated from healthy skin of Pudu puda and Cervus elaphus deer. Microbiology Resource Announcements 6: e00298-18 doi

Meyer A, Dinh TX, Han TA, Do DV, Nhu TV, Pham LT, Nguyen TTT, Newman S, Hasler B, Pfeiffer DU, Vergne T (2018) Trade patterns facilitating highly pathogenic avian influenza virus dissemination in the free-grazing layer duck system in Vietnam. Transboundary and Emerging Diseases 65: 408-419 doi

Michalakis Y, Blanc S (2018) Multicomponent viral systems. Current Opinion in Virology 33: VI-IX doi

Miguel E, Fournet F, Yerbanga S, Moiroux N, Yao F, Vergne T, Cazelles B, Dabiré RK, Simard F, Roche B (2018) Optimizing public health strategies in low-income countries: epidemiology, ecology and evolution for the control of malaria. In, Ecology and evolution of infectious diseases: Pathogen control and public health management in low-income countries. Roche B, Broutin H & Simard F. (Eds.) Oxford University Press, Oxford.

Murray KA, Olivero J, Roche B, Tiedt S, Guégan JF (2018) Pathogeography: leveraging the biogeography of human infectious diseases for global health management. Ecography 41: 1411-1427 doi

Otto TD, Gilabert A, Crellen T, Bohme U, Arnathau C, Sanders M, Oyola SO, Okouga AP, Boundenga L, Willaume E, Ngoubangoye B, Moukodoum ND, Paupy C, Durand P, Rougeron V, Ollomo B, Renaud F, Newbold C, Berriman M, Prugnolle F (2018) Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria. Nature Microbiology 3: 687-697 doi

Roche B, Broutin H & Simard F (2018) Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. Oxford University Press, New York. Pp. 322

Roche B, Broutin H & Simard F (2018) Optimizing public health strategies in low-income countries: The challenge to apply the scientific knowledge and for which disease? In, Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. Roche B, Broutin H & Simard F (Eds.) Oxford University Press, New York. pp 309-320

Roche B, Ujvari B, Thomas F (2018) Fourth international biannual evolution and cancer conference (resistance, resilience, and robustness: Can we target cancer's evolutionary and ecological nature?): Meeting report. Tempe, AZ, USA. December 7-10, 2017. Evolutionary Applications 11: 829-835 doi

Rouet F, Nouhin J, Zheng DP, Roche B, Black A, Prak S, Leoz M, Gaudy-Graffin C, Ferradini L, Mom C, Mam S, Gautier C, Lesage G, Ken S, Phon K, Kerleguer A, Yang CF, Killam W, Fujita M, Mean C, Fontenille D, Baring F, Plantier JC, Bedford T, Ramos A, Saphonn V (2018) Massive iatrogenic outbreak of human immunodeficiency virus type 1 in rural Cambodia, 2014-2015. Clinical Infectious Diseases 66: 1733-1741 doi

Russell T, Lisovski S, Olsson M, Brown G, Spindler R, Lane A, Keeley T, Hibbard C, Hogg CJ, Thomas F, Belov K, Ujvari B, Madsen T (2018) MHC diversity and female age underpin reproductive success in an Australian icon; the Tasmanian Devil. Scientific Reports 8: 4175 doi

Russell T, Madsen T, Thomas F, Raven N, Hamede R, Ujvari B (2018) Oncogenesis as a selective force: adaptive evolution in the face of a transmissible cancer. Bioessays 40: 1700146 doi

Sabourin E, Alda P, Vazquez A, Hurtrez-Boussès S, Vittecoq M (2018) Impact of human activities on fasciolosis transmission. Trends in Parasitology 34: 891-903 doi

Sen Kwek S, Watanabe S, Chan KR, Ong EZ, Tan HC, Ng WC, Nguyen MTX, Gan ES, Zhang SL, Chan KWK, Tan JH, Sessions OM, Manuel M, Pompon J, Chua C, Hazirah S, Tryggvason K, Vasudevan SG, Ooi EE (2018) A systematic approach to the development of a safe live attenuated Zika vaccine. Nature Communications 9: 1031 doi

Sofonea MT, Aldakak L, Boullosa LFVV, Alizon S (2018) Can ebola virus evolve to be less virulent in humans? Journal of Evolutionary Biology 31: 382-392 doi

Suwanmanee S, Surasombatpattana P, Soonthornworasiri N, Hamel R, Maneekan P, Missé D, Luplertlop N (2018) Monitoring arbovirus in Thailand: surveillance of dengue, chikungunya and Zika virus, with a focus on coinfections. Acta Tropica 188: 244-250 doi

Taberna M, Torres M, Alejo M, Mena M, Tous S, Marquez S, Pavon MA, Leon X, Garcia J, Guix M, Hijano R, Bonfill T, Aguila A, Lozano A, Mesia R, Alemany L, Bravo IG (2018) The use of HPV16-E5, EGFR, and pEGFR as prognostic biomarkers for oropharyngeal cancer patients. Frontiers in Oncology 8: 589 doi

Tchetgna HS, Sem Ouilibona R, Nkili-Meyong AA, Caron M, Labouba I, Selekon B, Njouom R, Leroy EM, Nakoune E, Berthet N (2018) Viral exploration of negative acute febrile cases observed during chikungunya outbreaks in Gabon. Intervirology 61: 174-184 doi

Thomas F, Kareva I, Raven N, Hamede R, Pujol P, Roche B, Ujvari B (2018) Evolved dependence in response to cancer. Trends in Ecology & Evolution 33: 269-276 doi

Thomas F, Vavre F, Tissot T, Vittecoq M, Giraudeau M, Bernex F, Missé D, Renaud F, Raven N, Beckmann C, Hamede R, Biro PA, Ujvari B (2018) Cancer is not (only) a senescence problem. Trends in Cancer 4: 169-172 doi

Ujvari B, Klaassen M, Raven N, Russell T, Vittecoq M, Hamede R, Thomas F, Madsen T (2018) Genetic diversity, inbreeding and cancer. Proceedings of the Royal Society of London, Series B 285: 20172589 doi

Valls-Fox H, Chamaille-Jammes S, de Garine-Wichatitsky M, Perrotton A, Courbin N, Miguel E, Guerbois C, Caron A, Loveridge A, Stapelkamp B, Muzamba M, Fritz H (2018) Water and cattle shape habitat selection by wild herbivores at the edge of a protected area. Animal Conservation 21: 365-375 doi

Viboud C, Broutin H & Chowell G (2018) Spatial-temporal transmission dynamics and control of infectious diseases: Ebola virus disease (EVD) as a case study. In, Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. Roche B, Broutin H & Simard F (Eds.) Oxford University Press, New York.

Vittecoq M, Giraudeau M, Sepp T, Marcogliese DJ, Klaassen M, Renaud F, Ujvari B, Thomas F (2018) Turning natural adaptations to oncogenic factors into an ally in the war against cancer. Evolutionary Applications 11: 836-844 doi

Willemsen A, Carrasco JL, Elena SF, Zwart MP (2018) Going, going, gone: predicting the fate of genomic insertions in plant RNA viruses. Heredity 121: 499-509 doi


Aberkane S, Compain F, Decre D, Pantel A, Vittecoq M, Solassol J, Bouzinbi N, Jean-Pierre H, Godreuil S (2017) Persistence of blaCMY-2-producing Proteus mirabilis in two gull colonies at a 1-year interval in southern France. Journal of Global Antimicrobial Resistance 9: 138-140 doi

Al-Shorbaji F, Roche B, Britton R, Andreou D, Gozlan R (2017) Influence of predation on community resilience to disease. Journal of Animal Ecology 86: 1147-1158 doi

Alizon S, Murall CL, Bravo IG (2017) Why human papillomavirus acute infections matter. Viruses 9: 293 doi

Alizon S, Saulnier E (2017) Phylodynamics of viral infections. Virologie 21: 119-129 doi

Alkorta I, Elguero J, Elguero E (2017) Nitroxide stable radicals interacting as lewis bases in hydrogen bonds: a search in the cambridge structural data base for intermolecular contacts. Journal of Molecular Structure 1148: 150-161 doi

Alout H, Roche B, Dabire RK, Cohuet A (2017) Consequences of insecticide resistance on malaria transmission. PLoS Pathogens 13: e1006499 doi

Amarasinghe GK, Bao YM, Basler CF, Bavari S, Beer M, Bejerman N, Blasdell KR, Bochnowski A, Briese T, Bukreyev A, Calisher CH, Chandran K, Collins PL, Dietzgen RG, Dolnik O, Durrwald R, Dye JM, Easton AJ, Ebihara H, Fang Q, Formenty P, Fouchier RAM, Ghedin E, Harding RM, Hewson R, Higgins CM, Hong J, Horie M, James AP, Jiang DH, Kobinger GP, Kondo H, Kurath G, Lamb RA, Lee B, Leroy EM, Li M, Maisner A, Muhlberger E, Netesov SV, Nowotny N, Patterson JL, Payne SL, Paweska JT, Pearson MN, Randall RE, Revill PA, Rima BK, Rota P, Rubbenstroth D, Schwemmle M, Smither SJ, Song QS, Stone DM, Takada A, Terregino C, Tesh RB, Tomonaga K, Tordo N, Towner JS, Vasilakis N, Volchkov VE, Wahl-Jensen V, Walker PJ, Wang BB, Wang D, Wang F, Wang LF, Werren JH, Whitfield AE, Yan ZC, Ye GY, Kuhn JH (2017) Taxonomy of the order Mononegavirales: update 2017. Archives of Virology 162: 2493-2504 doi

Arnal A, Jacqueline C, Ujvari B, Leger L, Moreno C, Faugere D, Tasiemski A, Boidin-Wichlacz C, Missé D, Renaud F, Montagne J, Casali A, Roche B, Mery F, Thomas F (2017) Cancer brings forward oviposition in the fly Drosophila melanogaster. Ecology and Evolution 7: 272-276 doi

Bao YM, Amarasinghe GK, Basler CF, Bavari S, Bukreyev A, Chandran K, Dolnik O, Dye JM, Ebihara H, Formenty P, Hewson R, Kobinger GP, Leroy EM, Muhlberger E, Netesov SV, Patterson JL, Paweska JT, Smither SJ, Takada A, Towner JS, Volchkov VE, Wahl-Jensen V, Kuhn JH (2017) Implementation of objective PASC-derived taxon demarcation criteria for official classification of filoviruses. Viruses 9: 106 doi

Bedhomme S, Pantoja DP, Bravo IG (2017) Plasmid and clonal interference during post horizontal gene transfer evolution. Molecular Ecology 26: 1832-1847 doi

Biron DG, Nedelkov D, Missé D, Holzmuller P, Tibayrenc M (2017) Proteomics and host-pathogen interactions: a bright future? In, Genetics and Evolution of Infectious Diseases . 2nd Edition. Ed. Tibayrenc M. pp 227-255 doi

Bitome-Essono PY, Ollomo B, Arnathau C, Durand P, Mokoudoum ND, Yacka-Mouele L, Okouga AP, Boundenga L, Mve-Ondo B, Obame-Nkoghe J, Mbehang-Nguema P, Njiokou F, Makanga B, Wattier R, Ayala D, Ayala FJ, Prugnolle F, Paupy C (2017) Tracking zoonotic pathogens using bloodsucking flies as 'flying syringes'. Elife 6: e22069 doi

Blanc S, Boëtsch G, Hossaert-McKey M & Renaud F (2017) Eds. Écologie de la santé : pour une nouvelle lecture de nos maux. pp. 192. Le cherche midi, en partenariat avec le CNRS

Boundenga L, Perkins SL, Ollomo B, Rougeron V, Leroy EM, Renaud F, Prugnolle F (2017) Haemosporidian parasites of reptiles and birds from Gabon, Central Africa. Journal of Parasitology 103: 330-337 doi

Brazier L, Elguero E, Koumavor CK, Renaud N, Prugnolle F, Thomas F, Ategbo S, Engoba M, Obengui, Leroy EM, Durand P, Renaud F, Becquart P (2017) Evolution in fecal bacterial/viral composition in infants of two central African countries (Gabon and Republic of the Congo) during their first month of life. PLoS One 12: e0185569 doi

Campos RK, Wong B, Xie XP, Lu YF, Shi PY, Pompon J, Garcia-Blanco MA, Bradrick SS (2017) RPLP1 and RPLP2 are essential flavivirus host factors that promote early viral protein accumulation. Journal of Virology 91: UNSP e01706 doi

Caron Y, Celi-Erazo M, Hurtrez-Boussès S, Lounnas M, Pointier JP, Saegerman C, Losson B, Benitez-Ortiz W (2017) Is Galba schirazensis (Mollusca, Gastropoda) an intermediate host of Fasciola hepatica (Trematoda, Digenea) in Ecuador? Parasite 24: 24 doi

Combe M, Velvin CJ, Morris A, Garchitorena A, Carolan K, Sanhueza D, Roche B, Couppie P, Guégan JF, Gozlan RE (2017) Global and local environmental changes as drivers of Buruli ulcer emergence. Emerging Microbes & Infections 6: e22 doi

Correa AC, De Meeûs T, Dreyfuss G, Rondelaud D, Hurtrez-Boussès S (2017) Galba truncatula and Fasciola hepatica: genetic costructures and interactions with intermediate host dispersal. Infection, Genetics and Evolution 55: 186-194 doi

Day KP, Artzy-Randrup Y, Tiedje KE, Rougeron V, Chen DS, Rask TS, Rorick MM, Migot-Nabias F, Deloron P, Luty AJF, Pascual M (2017) Evidence of strain structure in Plasmodium falciparum var gene repertoires in children from Gabon, West Africa. Proceedings of the National Academy of Sciences USA 114: E4103-E4111 doi

de Meeûs T, Prugnolle F, Tibayrenc M (2017) Clonal evolution. In, Genetics and Evolution of Infectious Diseases. 2nd Edition. Ed. Tibayrenc M. pp 99-113 doi

Delabouglise A, Choisy M, Phan TD, Antoine-Moussiaux N, Peyre M, Vu TD, Pfeiffer DU, Fournie G (2017) Economic factors influencing zoonotic disease dynamics: demand for poultry meat and seasonal transmission of avian influenza in Vietnam. Scientific Reports 7: 5905 doi

Douine M, Gozlan R, Nacher M, Dufour J, Reynaud Y, Elguero E, Combe M, Velvin CJ, Chevillon C, Berlioz-Arthaud A, Labbé S, Sainte-Marie D, Guégan JF, Pradinaud R, Couppié P (2017) Mycobacterium ulcerans infection (Buruli ulcer) in French Guiana, South America, 1969–2013: an epidemiological study. The Lancet Planetary Health 1: e65-e73 doi

Dupraz M, Toty C, Devillers E, Blanchon T, Elguero E, Vittecoq M, Moutailler S, McCoy KD (2017) Population structure of the soft tick Ornithodoros maritimus and its associated infectious agents within a colony of its seabird host Larus michahellis. International Journal for Parasitology 6: 122-130 doi

Duron O, Binetruy F, Noel V, Cremaschi J, McCoy KD, Arnathau C, Plantard O, Goolsby J, Pérez de León AA, Heylen DJA, Van Oosten AR, Gottlieb Y, Baneth G, Guglielmone AA, Estrada-Peña A, Opara MN, Zenner L, Vavre F, Chevillon C (2017) Evolutionary changes in symbiont community structure in ticks. Molecular Ecology 26: 2905-2921 doi

Farraudière L, Sonor F, Crico S, Etienne M, Mousson L, Hamel R, Missé D, Failloux AB, Simard F, Yébakima (2017) First detection of dengue and chikungunya viruses in natural populations of Aedes aegypti in Martinique during the 2013-2015 concomitant outbreak. Revista Panamericana De Salud Publica 41: e63 pdf

Gallet R, Fabre F, Michalakis Y, Blanc S (2017) The number of target molecules of the amplification step limits accuracy and sensitivity in ultradeep-sequencing viral population studies. Journal of Virology 91: UNSP e00561-17 doi

Garchitorena A, Sokolow SH, Roche B, Ngonghala CN, Jocque M, Lund A, Barry M, Mordecai EA, Daily GC, Jones JH, Andrews JR, Bendavid E, Luby SP, LaBeaud AD, Seetah K, Guégan JF, Bonds MH, De Leo G (2017) Disease ecology, health and the environment: a framework to account for ecological and socio-economic drivers in the control of neglected tropical diseases. Philosophical Transactions of the Royal Society B: Biological Sciences 372: 20160128 doi

Gilabert A, Gauffre B, Parisey N, Le Gallic JF, Lhomme P, Bretagnolle V, Dedryver CA, Baudry J, Plantegenest M (2017) Influence of the surrounding landscape on the colonization rate of cereal aphids and phytovirus transmission in autumn. Journal of Pest Science 90: 447-457 doi

Hamel R, Ferraris P, Wichit S, Diop F, Talignani L, Pompon J, Garcia D, Liégeois F, Sall AA, Yssel H, Missé D (2017) African and asian Zika virus strains differentially induce early antiviral responses in primary human astrocytes. Infection, Genetics and Evolution 49: 134-137 doi

Happel AU, Jaumdally SZ, Pidwell T, Cornelius T, Jaspan HB, Froissart R, Barnabas SL, Passmore JAS (2017) Probiotics for vaginal health in South Africa: what is on retailers' shelves? BMC Womens Health 17: 7 doi

Hosseini PR, Mills JN, Prieur-Richard AH, Ezenwa VO, Bailly X, Rizzoli A, Suzan G, Vittecoq M, Garcia-Pena GE, Daszak P, Guégan JF, Roche B (2017) Does the impact of biodiversity differ between emerging and endemic pathogens? the need to separate the concepts of hazard and risk. Philosophical Transactions of the Royal Society B: Biological Sciences 372: 20160129 doi

Jacqueline C, Biro PA, Beckmann C, Moller AP, Renaud F, Sorci G, Tasiemski A, Ujvari B, Thomas F (2017) Cancer: a disease at the crossroads of trade-offs. Evolutionary Applications 10: 215-225 doi

Jacqueline C, Brazier L, Faugere D, Renaud F, Thomas F, Roche B (2017) Can intestinal microbiota be associated with non-intestinal cancers? Scientific Reports 7: 12722 doi

Jacqueline C, Tasiemski A, Sorci G, Ujvari B, Maachi F, Missé D, Renaud F, Ewald P, Thomas F, Roche B (2017) Infections and cancer: the "fifty shades of immunity" hypothesis. BMC Cancer 17: 257 doi

Kuhn L, Majzoub K, Einhorn E, Chicher J, Pompon J, Imler JL, Hammann P, Meignin C (2017) Definition of a RACK1 interaction network in Drosophila melanogaster using SWATH-MS. G3-Genes Genomes Genetics 7: 2249-2258 doi

Le Coupanec A, Tchankouo-Nguetcheu S, Roux P, Khun H, Huerre M, Morales-Vargas R, Enguehard M, Lavillette D, Missé D, Choumet V (2017) Co-infection of mosquitoes with chikungunya and dengue viruses reveals modulation of the replication of both viruses in midguts and salivary glands of Aedes aegypti mosquitoes. International Journal of Molecular Sciences 18: 1708 doi

Lounnas M, Correa AC, Vázquez AA, Dia A, Escobar JS, Nicot A, Arenas J, Ayaqui R, Dubois MP, Gimenez T, Gutiérrez A, González-Ramírez C, Noya O, Prepelitchi L, Uribe N, Wisnivesky-Colli C, Yong M, David P, Loker ES, Jarne P, Pointier JP, Hurtrez-Boussès S (2017) Self-fertilization, long-distance flash invasion and biogeography shape the population structure of Pseudosuccinea columella at the worldwide scale. Molecular Ecology 26: 887-903 doi

Lounnas M, Vázquez AA, Alda P, Sartori K, Pointier JP, David P, Hurtrez-Boussès S (2017) Isolation, characterization and population-genetic analysis of microsatellite loci in the freshwater snail Galba cubensis (Lymnaeidae). Journal of Molluscan Studies 83: 63-68 doi

Maganga GD, Mavoungou JF, N'Dilimabaka N, Kinga ICM, Mve-Ondo B, Mombo IM, Ngoubangoye B, Cossic B, Okouyi CSM, Souza A, Leroy EM, Kumulungui B, Ollomo B (2017) Molecular identification of trypanosome species in trypanotolerant cattle from the south of Gabon. Parasite 24: 4 doi

Maganga GD, Ndong ALA, Okouyi CSM, Mandanda SM, N'Dilimabaka N, Pinto A, Agossou E, Cossic B, Akue JP, Leroy EM (2017) Serological evidence for the circulation of Rift Valley fever virus in domestic small ruminants in southern Gabon. Vector-Borne and Zoonotic Diseases 17: 443-446 doi

Makanga B, Costantini C, Rahola N, Yangari P, Rougeron V, Ayala D, Prugnolle F, Paupy C (2017) "Show me which parasites you carry and I will tell you what you eat", or how to infer the trophic behavior of hematophagous arthropods feeding on wildlife. Ecology and Evolution 7: 7578-7584 doi

Makiala-Mandanda S, Le Gal F, Ngwaka-Matsung N, Ahuka-Mundeke S, Onanga R, Bivigou-Mboumba B, Pukuta-Simbu E, Gerber A, Abbate JL, Mwamba D, Berthet N, Leroy EM, Muyembe-Tamfum JJ, Becquart P (2017) High prevalence and diversity of hepatitis viruses in suspected cases of yellow fever in the Democratic Republic of Congo. Journal of Clinical Microbiology 55: 1299-1312 doi

Meertens L, Labeau A, Dejarnac O, Cipriani S, Sinigaglia L, Bonnet-Madin L, Le Charpentier T, Hafirassou ML, Zamborlini A, Cao-Lormeau VM, Coulpier M, Missé D, Jouvenet N, Tabibiazar R, Gressens P, Schwartz O, Amara (2017) Axl mediates ZIKA virus entry in human glial cells and modulates innate immune responses. Cell Reports 18: 324-333 doi

Mendenhall IH, Manuel M, Moorthy M, Lee TTM, Low DHW, Missé D, Gubler DJ, Ellis BR, Ooi EE, Pompon J (2017) Peridomestic Aedes malayensis and Aedes albopictus are capable vectors of arboviruses in cities. PLoS Neglected Tropical Diseases 11: e0005667 doi

Meyer A, Dinh TX, Nhu TV, Pham LT, Newman S, Nguyen TTT, Pfeiffer DU, Vergne T (2017) Movement and contact patterns of long-distance free-grazing ducks and avian influenza persistence in Vietnam. PLoS One 12: e0178241 doi

Meyer A, Zamir L, Gilboa AB, Gelman B, Pfeiffer DU, Vergne T (2017) Quantitative assessment of the risk of release of foot-and-mouth disease virus via export of bull semen from Israel. Risk Analysis 37: 2350-2359 doi

Miguel E, Chevalier V, Ayelet G, Ben Bencheikh MN, Boussini H, Chu DK, El Berbri I, Fassi-Fihri O, Faye B, Fekadu G, Grosbois V, Ng BC, Perera RA, So T, Traore A, Roger F, Peiris M (2017) Risk factors for MERS coronavirus infection in dromedary camels in Burkina Faso, Ethiopia, and Morocco, 2015. Eurosurveillance 22: 15-24 30498 doi

Mombo IM, Lukashev AN, Bleicker T, Brunink S, Berthet N, Maganga GD, Durand P, Arnathau C, Boundenga L, Ngoubangoye B, Boue V, Liégeois F, Ollomo B, Prugnolle F, Drexler JF, Drosten C, Renaud F, Rougeron V, Leroy E (2017) African non-human primates host diverse enteroviruses. PLoS One 12: e0169067 doi

Moussavou-Boundzanga P, Koumakpayi IH, Labouba I, Leroy EM, Belembaogo E, Berthet N (2017) Human papillomavirus detection using the Abbott realtime high-risk HPV tests compared with conventional nested PCR coupled to high-throughput sequencing of amplification products in cervical smear specimens from a Gabonese female population. Virology Journal 14: 241 doi

Murall CL, Abbate JL, Touzel MP, Allen-Vercoe E, Alizon S, Froissart R, McCann K (2017) Invasions of host-associated microbiome networks. In, Networks of Invasion: Empirical Evidence and Case Studies. Advances in Ecological Research. 57: 201-281 doi

Nguyen PL, Vantaux A, Hien DFS, Dabire KR, Yameogo BK, Gouagna LC, Fontenille D, Renaud F, Simard F, Costantini C, Thomas F, Cohuet A, Lefèvre T (2017) No evidence for manipulation of Anopheles gambiae, An. coluzzii and An. arabiensis host preference by Plasmodium falciparum. Scientific Reports 7: 9415 doi

Nicolás-Párraga S, Alemany L, de Sanjosé S, Bosch FX, Bravo IG, RIS HPV TT and HPV VVAP study groups (2017) Differential HPV16 variant distribution in squamous cell carcinoma, adenocarcinoma and adenosquamous cell carcinoma. International Journal of Cancer 140: 2092-2100 doi

Obame-Nkoghe J, Leroy EM, Paupy C (2017) Diversity and role of cave-dwelling hematophagous insects in pathogen transmission in the afrotropical region. Emerging Microbes & Infections 6: e20 doi

Obame-Nkoghe J, Rahola N, Ayala D, Yangari P, Jiolle D, Allene X, Bourgarel M, Maganga GD, Berthet N, Leroy EM, Paupy C (2017) Exploring the diversity of blood-sucking Diptera in caves of Central Africa. Scientific Reports 7: 250 doi

Pimenoff VN, de Oliveira CM, Bravo IG (2017) Transmission between archaic and modern human ancestors during the evolution of the oncogenic human papillomavirus 16. Molecular Biology and Evolution 34: 4-19 doi

Pompon J, Manuel M, Ng GK, Wong B, Shan C, Manokaran G, Soto-Acosta R, Bradrick SS, Ooi EE, Missé D, Shi PY, Garcia-Blanco M (2017) Dengue subgenomic flaviviral RNA disrupts immunity in mosquito salivary glands to increase virus transmission. PLoS Pathogens 13: e1006535 doi

Pompon J, Morales-Vargas R, Manuel M, Tan CH, Vial T, Tan JH, Sessions OM, Vasconcelos PDC, Ng LC, Missé D (2017) A Zika virus from America is more efficiently transmitted than an Asian virus by Aedes aegypti mosquitoes from Asia. Scientific Reports 7: 1215 doi

Pontremoli C, Forni D, Cagliani R, Pozzoli U, Riva S, Bravo IG, Clerici M, Sironi M (2017) Evolutionary analysis of old world arenaviruses reveals a major adaptive contribution of the viral polymerase. Molecular Ecology 26: 5173-5188 doi

Postler TS, Clawson AN, Amarasinghe GK, Basler CF, Bavari S, Benko M, Blasdell KR, Briese T, Buchmeier MJ, Bukreyev A, Calisher CH, Chandran K, Charrel R, Clegg CS, Collins PL, de la Torre JC, Derisi JL, Dietzgen RG, Dolnik O, Durrwald R, Dye JM, Easton AJ, Emonet S, Formenty P, Fouchier RAM, Ghedin E, Gonzalez JP, Harrach B, Hewson R, Horie M, Jiang DH, Kobinger G, Kondo H, Kropinski AM, Krupovic M, Kurath G, Lamb RA, Leroy EM, Lukashevich IS, Maisner A, Mushegian AR, Netesov SV, Nowotny N, Patterson JL, Payne SL, Paweska JT, Peters CJ, Radoshitzky SR, Rima BK, Romanowski V, Rubbenstroth D, Sabanadzovic S, Sanfacon H, Salvato MS, Schwemmle M, Smither SJ, Stenglein MD, Stone DM, Takada A, Tesh RB, Tomonaga K, Tordo N, Towner JS, Vasilakis N, Volchkov VE, Wahl-Jensen V, Walker PJ, Wang LF, Varsani A, Whitfield AE, Zerbini FM, Kuhn JH (2017) Possibility and challenges of conversion of current virus species names to Linnaean binomials. Systematic Biology 66: 463-473 doi

Rasigade JP, Gilabert A, Wirth T, Tibayrenc M (2017) Microbes as tracers of past human demography and migrations. In, Genetics and Evolution of Infectious Diseases. 2nd Edition. Ed. Tibayrenc M. pp 141-165 doi

Riehle MM, Bukhari T, Gneme A, Guelbeogo WM, Coulibaly B, Fofana A, Pain A, Bischoff E, Renaud F, Beavogui AH, Traore SF, Sagnon N, Vernick KD (2017) The Anopheles gambiae 2La chromosome inversion is associated with susceptibility to Plasmodium falciparum in Africa. Elife 6: e25813 doi

Roche B, Gaillard B, Léger L, Pélagie-Moutenda R, Sochacki T, Cazelles B, Ledrans M, Blateau A, Fontenille D, Etienne M, Simard F, Salathe M, Yébakima (2017) An ecological and digital epidemiology analysis on the role of human behavior on the 2014 Chikungunya outbreak in Martinique. Scientific Reports 7: 5967 doi

Roche B, Rougeron V, Quintana-Murci L, Renaud F, Abbate JL, Prugnolle F (2017) Might interspecific interactions between pathogens drive host evolution? the case of Plasmodium species and duffy-negativity in human populations. Trends in Parasitology 33: 21-29 doi

Rougeron V, De Meeûs T, Bañuls AL (2017) Reproduction in Leishmania: a focus on genetic exchange. Infection, Genetics and Evolution 50: 128-132 doi

Rougeron V, Tiedje KE, Chen DS, Rask TS, Gamboa D, Maestre A, Musset L, Legrand E, Noya O, Yalcindag E, Renaud F, Prugnolle F, Day KP (2017) Evolutionary structure of Plasmodium falciparum major variant surface antigen genes in South America: implications for epidemic transmission and surveillance. Ecology and Evolution 7: 9376-9390 doi

Rutledge GG, Böhme U, Sanders M, Rrid AJ, Cotton JA, Maiga-Ascofare O, Djimde AA, Apinjoh TO, Amenga-Etego L, Manske M, Barnwell JW, Renaud F, Ollomo B, Prugnolle F, Anstey NM, Auburn S, Price RN, McCarthy JS, Kwiatkowski DP, Newbold CI, Berriman M, Otto TD (2017) Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution. Nature 542: 101-+ doi

Ryckebusch F, Berthet M, Missé D, Choumet V (2017) Infection of a French population of Aedes albopictus and of Aedes aegypti (Paea strain) with Zika virus reveals low transmission rates to these vectors' saliva. International Journal of Molecular Sciences 18: 2384 doi

Saulnier E, Gascuel O, Alizon S (2017) Inferring epidemiological parameters from phylogenies using regression-ABC: a comparative study. PLoS Computational Biology 13: e1005416 doi

Schmidt F, Liégeois F, Greenwood EJD, LeBreton M, Lester J, Deleplancque L, Peeters M, Aghokeng A, Tamoufe U, Diffo JLD, Takuo JM, Wolfe ND, Leroy E, Rouet F, Heeney JL (2017) Phyloepidemiological analysis reveals that viral divergence led to the paucity of simian immunodeficiency virus SIVmus/gsn/mon infections in wild populations. Journal of Virology 91: doi

Schuster D, Rickmeyer J, Gajdiss M, Thye T, Lorenzen S, Reif M, Josten M, Szekat C, Melo LDR, Schmithausen RM, Liégeois F, Sahl HG, Gonzalez JPJ, Nagel M, Bierbaum G (2017) Differentiation of Staphylococcus argenteus (formerly: Staphylococcus aureus clonal complex 75) by mass spectrometry from S. aureus using the first strain isolated from a wild African great ape. International Journal of Medical Microbiology 307: 57-63 doi

Sofonea MT, Alizon S, Michalakis Y (2017) Exposing the diversity of multiple infection patterns. Journal of Theoretical Biology 419: 278-289 doi

Thomas F, Jacqueline C, Tissot T, Henard M, Blanchet S, Loot G, Dawson E, Mery F, Renaud F, Montagne J, Beckmann C, Biro PA, Hamede R, Ujvari B (2017) The importance of cancer cells for animal evolutionary ecology. Nature Ecology & Evolution 1: 1592-1595 doi

Thomas F, Rome S, Mery F, Dawson E, Montagne J, Biro PA, Beckmann C, Renaud F, Poulin R, Raymond M, Ujvari B (2017) Changes in diet associated with cancer: an evolutionary perspective. Evolutionary Applications 10: 651-657 doi

Thomas F, Ujvari B, Renaud F, Vincent M (2017) Cancer adaptations: Atavism, de novo selection, or something in between? BioEssays 39: 1700039 doi

Tissot T, Thomas F, Roche B (2017) Non-cell-autonomous effects yield lower clonal diversity in expanding tumors. Scientific Reports 7: 11157 doi

Torres-Barcelo C, Kaltz O, Froissart R, Gandon S, Ginet N, Ansaldi M (2017) "French phage network"-second meeting report. Viruses 9: 87 doi

Vittecoq M, Gauduin H, Oudart T, Bertrand O, Roche B, Guillemain M, Boutron O (2017) Modeling the spread of avian influenza viruses in aquatic reservoirs: a novel hydrodynamic approach applied to the Rhone delta (southern France). Science of the Total Environment 595: 787-800 doi

Vittecoq M, Laurens C, Brazier L, Durand P, Elguero E, Arnal A, Thomas F, Aberkane S, Renaud N, Prugnolle F, Solassol J, Jean-Pierre H, Godreuil S, Renaud F (2017) VIM-1 carbapenemase-producing Escherichia coli in gulls from southern France. Ecology and Evolution 7: 1224-1232 doi

Wichit S, Diop F, Hamel R, Talignani L, Ferraris P, Cornelie S, Liégeois F, Thomas F, Yssel H, Missé D (2017) Aedes aegypti saliva enhances chikungunya virus replication in human skin fibroblasts via inhibition of the type I interferon signaling pathway. Infection, Genetics and Evolution 55: 68-70 doi

Wichit S, Hamel R, Bernard E, Talignani L, Diop F, Ferraris P, Liégeois F, Ekchariyawat P, Luplertlop N, Surasombatpattana P, Thomas F, Merits A, Choumet V, Roques P, Yssel H, Briant L, Missé D (2017) Imipramine inhibits chikungunya virus replication in human skin fibroblasts through interference with intracellular cholesterol trafficking. Scientific Reports 7: 3145 doi

Willemsen A, Zwart MP, Ambros S, Carrasco JL, Elena SF (2017) 2b or not 2b: Experimental evolution of functional exogenous sequences in a plant RNA virus. Genome Biology and Evolution 9: 297-310 doi

Willemsen A, Zwart MP, Elena SF (2017) High virulence does not necessarily impede viral adaptation to a new host: a case study using a plant RNA virus. BMC Evolutionary Biology 17: 25 doi

Wolf B, Diop F, Ferraris P, Wichit S, Busso C, Missé D, Gönczy P (2017) Zika virus causes supernumerary foci with centriolar proteins and impaired spindle positioning. Open Biology 7: 160231 doi

Yeh SC, Pompon J (2017) Flaviviruses produce a subgenomic flaviviral RNA that enhances mosquito transmission. DNA and Cell Biology doi

Zhang ZL, Gu QY, Montero MD, Bravo IG, Marques-Bonet T, Haussinger D, Munk C (2017) Stably expressed APOBEC3H forms a barrier for cross-species transmission of simian immunodeficiency virus of chimpanzee to humans. PLoS Pathogens 13: e1006746 doi


Abbate JL, Murall CL, Richner H, Althaus CL (2016) Potential impact of sexual transmission on Ebola virus epidemiology: Sierra Leone as a case study. PLoS Neglected Tropical Diseases 10: e0004676 doi

Aberkane S, Compain F, Decre D, Dupont C, Laurens C, Vittecoq M, Pantel A, Solassol J, Carriere C, Renaud F, Brieu N, Lavigne JP, Bouzinbi N, Ouedraogo AS, Jean-Pierre H, Godreuil S (2016) High prevalence of SXT/R391-related integrative and conjugative elements carrying bla(CMY-2) in Proteus mirabilis isolates from gulls in the South of France. Antimicrobial Agents and Chemotherapy 60: 1148-1152 doi

Afonso CL, Amarasinghe GK, Banyai K, Bao YM, Basler CF, Bavari S, Bejerman N, Blasdell KR, Briand FX, Briese T, Bukreyev A, Calisher CH, Chandran K, Cheng JS, Clawson AN, Collins PL, Dietzgen RG, Dolnik O, Domier LL, Durrwald R, Dye JM, Easton AJ, Ebihara H, Farkas SL, Freitas-Astua J, Formenty P, Fouchier RAM, Fu YP, Ghedin E, Goodin MM, Hewson R, Horie M, Hyndman TH, Jiang DH, Kitajima EW, Kobinger GP, Kondo H, Kurath G, Lamb RA, Lenardon S, Leroy EM, Li CX, Lin XD, Liu LJ, Longdon B, Marton S, Maisner A, Muhlberger E, Netesov SV, Nowotny N, Patterson JL, Payne SL, Paweska JT, Randall RE, Rima BK, Rota P, Rubbenstroth D, Schwemmle M, Shi M, Smither SJ, Stenglein MD, Stone DM, Takada A, Terregino C, Tesh RB, Tian JH, Tomonaga K, Tordo N, Towner JS, Vasilakis N, Verbeek M, Volchkov VE, Wahl-Jensen V, Walsh JA, Walker PJ, Wang D, Wang LF, Wetzel T, Whitfield AE, Xie JT, Yuen KY, Zhang YZ, Kuhn JH (2016) Taxonomy of the order Mononegavirales: update 2016. Archives of Virology 161: 2351-2360 doi

Alizon S (2016) C'est grave Dr Darwin ? pp 240. Seuil

Alizon S (2016) A visionary pioneer of parasite ecology and evolution. American Naturalist 187: doi

Alten B, Maia C, Afonso MO, Campino L, Jimenez M, Gonzalez E, Molina R, Bañuls AL, Prudhomme J, Vergnes B, Toty C, Cassan C, Rahola N, Thierry M, Sereno D, Bongiorno G, Bianchi R, Khoury C, Tsirigotakis N, Dokianakis E, Antoniou M, Christodoulou V, Mazeris A, Karakus M, Ozbel Y, Arserim SK, Kasap OE, Gunay F, Oguz G, Kaynas S, Tsertsvadze N, Tskhvaradze L, Giorgobiani E, Gramiccia M, Volf P, Gradoni L (2016) Seasonal dynamics of phlebotomine sand fly species proven vectors of Mediterranean leishmaniasis caused by Leishmania infantum. PLoS Neglected Tropical Diseases 10: e0004458 doi

Arnal A, Tissot T, Ujvari B, Nunney L, Solary E, Laplane L, Bonhomme F, Vittecoq M, Tasiemski A, Renaud F, Pujol P, Roche B, Thomas F (2016) The guardians of inherited oncogenic vulnerabilities. Evolution 70: 1-6 doi

Arnal A, Vittecoq M, Pearce-Duvet J, Gauthier-Clerc M, Boulinier T, Jourdain E (2016) Laridae: a neglected reservoir that could play a major role in avian influenza virus epidemiological dynamics. Critical Reviews in Microbiology 42: 508-519 doi

Berticat C, Thomas F, Dauvilliers Y, Jaussent I, Ritchie K, Helmer C, Tzourio C, Raymond M, Artero S (2016) Excessive daytime sleepiness and antipathogen drug consumption in the elderly: a test of the immune theory of sleep. Scientific Reports 6: 23574 doi

Blanc S, Michalakis Y (2016) Manipulation of hosts and vectors by plant viruses and impact of the environment. Current Opinion in Insect Science 16: 36-43 doi

Boithias L, Choisy M, Souliyaseng N, Jourdren M, Quet F, Buisson Y, Thammahacksa C, Silvera N, Latsachack K, Sengtaheuanghoung O, Pierret A, Rochelle-Newall E, Becerra S, Ribolzi O (2016) Hydrological regime and water shortage as drivers of the seasonal incidence of diarrheal diseases in a tropical montane environment. PLoS Neglected Tropical Diseases 10: e0005195 doi

Boundenga L, Makanga B, Ollomo B, Gilabert A, Rougeron V, Mve-Ondo B, Arnathau C, Durand P, Moukodoum ND, Okouga AP, Delicat-Loembet L, Yacka-Mouele L, Rahola N, Leroy E, Tidiane BAC, Renaud F, Prugnolle F, Paupy C (2016) Haemosporidian parasites of antelopes and other vertebrates from Gabon, Central Africa. PLoS One 11: e0148958 doi

Cameron KN, Reed P, Morgan DB, Ondzie AI, Sanz CM, Kuhl HS, Olson SH, Leroy E, Karesh WB, Mundry R (2016) Spatial and temporal dynamics of a mortality event among Central African great apes. PLoS One 11: e0154505 doi

Cassan C, Dione MM, Dereure J, Diedhiou S, Bucheton B, Hide M, Kako C, Gaye O, Senghor M, Niang AA, Bañuls AL, Faye B (2016) First insights into the genetic diversity and origin of Leishmania infantum in Mont Rolland (Thiès region, Senegal). Microbes and Infection 18: 412-420 doi

Chazel M, Marchandin H, Keck N, Terru D, Carriere C, Ponsoda M, Jacomo V, Panteix G, Bouzinbi N, Bañuls AL, Choisy M, Solassol J, Aubry A, Godreuil S (2016) Evaluation of the SLOMYCO sensititre (R) panel for testing the antimicrobial susceptibility of Mycobacterium marinum isolates. Annals of Clinical Microbiology and Antimicrobials 15: 30 doi

Félez-Sánchez M, Vergara M, de Sanjosé S, Castellsague X, Alemany L, Bravo IG, Grp Vvapo Ris Hpv Tt Study (2016) Searching beyond the usual papillomavirus suspects in squamous carcinomas of the vulva, penis and head and neck. Infection, Genetics and Evolution 45: 198-204 doi

François S, Filloux D, Roumagnac P, Bigot D, Gayral P, Martin DP, Froissart R, Ogliastro M (2016) Discovery of parvovirus-related sequences in an unexpected broad range of animals. Scientific Reports 6: 30880 doi

Frumence E, Roche M, Krejbich-Trotot P, El-Kalamouni C, Nativel B, Rondeau P, Missé D, Gadea G, Viranaicken W, Despres P (2016) The south pacific epidemic strain of Zika virus replicates efficiently in human epithelial A549 cells leading to IFN-beta production and apoptosis induction. Virology 493: 217-226 doi

Funk AL, Goutard FL, Miguel E, Bourgarel M, Chevalier V, Faye B, Peiris JSM, Van Kerkhove MD, Roger FL (2016) MERS-CoV at the animal-human interface: inputs on exposure pathways from an expert-opinion elicitation. Frontiers in Veterinary Science 3: 88 doi

García-Peña GE, Garchitorena A, Carolan K, Canard E, Prieur-Richard AH, Suzán G, Mills JN, Roche B, Guégan JF (2016) Niche-based host extinction increases prevalence of an environmentally acquired pathogen. Oikos 125: 1508-1515 doi

Gilabert A, Curran DM, Harvey SC, Wasmuth JD (2016) Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option. BMC Genomics 17: 476 doi

Hamel R, Liégeois F, Wichit S, Pompon J, Diop F, Talignani L, Thomas F, Desprès P, Yssel H, Missé D (2016) Zika virus: epidemiology, clinical features and host-virus interactions. Microbes and Infection 18: doi

Hartfield M, Glemin S (2016) Limits to adaptation in partially selfing species. Genetics 203: 959 doi

Hassanin A, Nesi N, Marin J, Kadjo B, Pourrut X, Leroy E, Gembu GC, Akawa PM, Ngoagouni C, Nakoune E, Ruedi M, Tshikung D, Shongo CP, Bonillo C (2016) Comparative phylogeography of African fruit bats (Chiroptera, Pteropodidae) provide new insights into the outbreak of Ebola virus disease in West Africa, 2014-2016. Comptes Rendus Biologies 339: 517-528 doi

Hien DFdS, Dabire KR, Roche B, Diabate A, Yerbanga RS, Cohuet A, Yameogo BK, Gouagna LC, Hopkins RJ, Ouedraogo GA, Simard F, Ouedraogo JB, Ignell R, Lefèvre T (2016) Plant-mediated effects on mosquito capacity to transmit human malaria. PLoS Pathogens 12: e1005773 doi

Imboumy-Limoukou RK, Maghendi-Nzondo S, Kouna CL, Bounaadja L, Mbang S, Biteghe JC, Eboumbou C, Prugnolle F, Florent I, Lekana-Douki JB (2016) Immunoglobulin response to the low polymorphic Pf113 antigen in children from Lastoursville, south-east of Gabon. Acta Tropica 163: 149-156 doi

Lambrechts MM, Blondel J, Bernard C, Caro SP, Charmantier A, Demeyrier V, Doutrelant C, Dubuc-Messier G, Fargevieille A, de Franceschi C, Giovannini P, Gregoire A, Hurtrez-Boussès S, Lucas A, Mainwaring MC, Marrot P, Mennerat A, Perret S, Perret P (2016) Exploring biotic and abiotic determinants of nest size in mediterranean great tits (Parus major) and blue tits (Cyanistes caeruleus). Ethology 122: 492-501 doi

Lievens EJP, Henriques GJB, Michalakis Y, Lenormand T (2016) Maladaptive sex ratio adjustment in the invasive brine shrimp Artemia franciscana. Current Biology 26: 1463-1467 doi

Maganga GD, Relmy A, Bakkali-Kassimi L, Ngoubangoye B, Tsoumbou T, Bouchier C, N'Dilimabaka N, Leroy EM, Zientara S, Berthet N (2016) Molecular characterization of Orf virus in goats in Gabon, Central Africa. Virology Journal 13: doi

Makanga B, Yangari P, Rahola N, Rougeron V, Elguero E, Boundenga L, Moukodoum ND, Okouga AP, Arnathau C, Durand P, Willaume E, Ayala D, Fontenille D, Ayala FJ, Renaud F, Ollomo B, Prugnolle F, Paupy C (2016) Ape malaria transmission and potential for ape-to-human transfers in Africa. Proceedings of the National Academy of Sciences USA 113: 5329-5334 doi

Mangombi JB, Brouat C, Loiseau A, Banga O, Leroy EM, Bourgarel M, Duplantier JM (2016) Urban population genetics of the invasive black rats in Franceville, Gabon. Journal of Zoology 299: 183-190 doi

Maure F, Thomas F, Doyon J, Brodeur J (2016) Host nutritional status mediates degree of parasitoid virulence. Oikos 125: 1314-1323 doi

Mengual-Chulá B, Bedhomme S, Lafforgue G, Elena SF, Bravo IG (2016) Assessing parallel gene histories in viral genomes. BMC Evolutionary Biology 16: 32 doi

Moussavou PB, Koumakpayi IH, Nkili-Meyong AA, Labouba I, Bisvigou U, Chansi JK, Engohan-Aloghe C, Dissanami F, Ambounda N, Delannoy-Vieillard AS, Diancourt L, Nkoghe D, Leroy EM, Belembaogo E, Berthet N (2016) Molecular analysis of human papillomavirus detected among women positive for cervical lesions by visual inspection with acetic acid/Lugol's iodine (VIA/VILI) in Libreville, Gabon. Infectious Agents and Cancer 11: 50 doi

Muller MA, Devignot S, Lattwein E, Corman VM, Maganga GD, Gloza-Rausch F, Binger T, Vallo P, Emmerich P, Cottontail VM, Tschapka M, Oppong S, Drexler JF, Weber F, Leroy EM, Drosten C (2016) Evidence for widespread infection of African bats with Crimean-Congo hemorrhagic fever-like viruses. Scientific Reports 6: 26637 doi

Ngoubangoye B, Boundenga L, Arnathau C, Mombo IM, Durand P, Tsoumbou TA, Otoro BV, Sana R, Okouga AP, Moukodoum N, Willaume E, Herbert A, Fouchet D, Rougeron V, Ba CT, Ollomo B, Paupy C, Leroy EM, Renaud F, Pontier D, Prugnolle F (2016) The host specificity of ape malaria parasites can be broken in confined environments. International Journal for Parasitology 46: 737-744 doi

Nguyen VAT, Bañuls AL, Tran THT, Pham KLT, Nguyen TS, Nguyen HV, Nguyen NLT, Dang DA, Marks GB, Choisy M (2016) Mycobacterium tuberculosis lineages and anti-tuberculosis drug resistance in reference hospitals across Viet Nam. BMC Microbiology 16: 167 doi

Nicolás-Párraga S, Gandini C, Pimenoff VN, Alemany L, de Sanjose S, Bosch FX, Bravo IG, Ris Hpv TT, Grp Hpv Vvap Study (2016) HPV16 variants distribution in invasive cancers of the cervix, vulva, vagina, penis, and anus. Cancer Medicine 5: 2909-2919 doi

Obame-Nkoghe J, Rahola N, Bourgarel M, Yangari P, Prugnolle F, Maganga GD, Leroy EM, Fontenille D, Ayala D, Paupy C (2016) Bat flies (Diptera: Nycteribiidae and Streblidae) infesting cave-dwelling bats in Gabon: diversity, dynamics and potential role in Polychromophilus melanipherus transmission. Parasites & Vectors 9: 333 doi

Petitdemange C, Wauquier N, Devilliers H, Yssel H, Mombo I, Caron M, Nkoghe D, Debre P, Leroy E, Vieillard V (2016) Longitudinal analysis of natural killer cells in dengue virus-infected patients in comparison to chikungunya and chikungunya/dengue virus-infected patients. PLoS Neglected Tropical Diseases 10: e0004499 doi

Peyre M, Choisy M, Sobhy H, Kilany WH, Gely M, Tripodi A, Dauphin G, Saad M, Roger F, Lubroth J, Jobre Y (2016) Added value of avian influenza (H5) day-old chick vaccination for disease control in Egypt. Avian Diseases 60: 245-252

Pratlong F, Balard Y, Lami P, Talignani L, Ravel C, Dereure J, Lefebvre M, Serres G, Bastien P, Dedet JP (2016) The Montpellier Leishmania collection, from a laboratory collection to a biological resource center: a 39-year-long story. Biopreservation and Biobanking 14: 470-479 doi

Prudhomme J, Cassan C, Hide M, Toty C, Rahola N, Vergnes B, Dujardin JP, Alten B, Sereno D, Bañuls AL (2016) Ecology and morphological variations in wings of Phlebotomus ariasi (Diptera: Psychodidae) in the region of Roquedur (Gard, France): a geometric morphometrics approach. Parasites & Vectors 9: 578 doi

Roche B, Thomas F (2016) Third international biannual Evolution and Cancer Conference (evolutionary trade-offs and clinical consequences) meeting report. San Francisco, CA, USA. 10-13 December 2015. Evolutionary Applications 9: 423-426 doi

Rougeron V, Suquet E, Maganga GD, Jiolle D, Mombo IM, Bourgarel M, Motsch P, Arnathau C, Durand P, Drexler F, Drosten C, Renaud F, Prugnolle F, Leroy EM (2016) Characterization and phylogenetic analysis of new bat astroviruses detected in Gabon, Central Africa. Acta Virologica 60: 386-392 doi

Segata N, Baldini F, Pompon J, Garrett WS, Truong DT, Dabire RK, Diabate A, Levashina EA, Catteruccia F (2016) The reproductive tracts of two malaria vectors are populated by a core microbiome and by gender-and swarm-enriched microbial biomarkers. Scientific Reports 6: 24207 doi

Senghor MW, Niang AA, Depaquit J, Ferte H, Faye MN, Elguero E, Gaye O, Alten B, Perktas U, Cassan C, Faye B, Bañuls AL (2016) Transmission of Leishmania infantum in the canine leishmaniasis focus of Mont-Rolland, Senegal: ecological, parasitological and molecular evidence for a possible role of Sergentomyia sand flies. PLoS Neglected Tropical Diseases 10: e0004940 doi

Sicard A, Michalakis Y, Gutiérrez S, Blanc S (2016) The strange lifestyle of multipartite viruses. PLoS Pathogens 12: e1005819 doi

Sochacki T, Jourdain F, Perrin Y, Noel H, Paty M, de Valk H, Septfons A, Simard F, Fontenille D, Roche B (2016) Imported chikungunya cases in an area newly colonised by Aedes albopictus: mathematical assessment of the best public health strategy. Eurosurveillance 21: 22-30 30221 doi

Succo T, Leparc-Goffart I, Ferre J, Roiz D, Broche B, Maquart M, Noel H, Catelinois O, Entezam F, Caire D, Jourdain F, Esteve-Moussion I, Cochet A, Paupy C, Rousseau C, Paty M, Golliot F (2016) Autochthonous dengue outbreak in Nimes, South of France, July to September 2015. Eurosurveillance 21: 5-11 30240 doi

Tchioffo MT, Abate L, Boissière A, Nsango SE, Gimonneau G, Berry A, Oswald E, Dubois D, Morlais I (2016) An epidemiologically successful Escherichia coli sequence type modulates Plasmodium falciparum infection in the mosquito midgut. Infection, Genetics and Evolution 43: 22-30 doi

Tchioffo MT, Boissière A, Abate L, Nsango SE, Bayibéki AN, Awono-Ambéné PH, Christen R, Gimonneau G, Morlais I (2016) Dynamics of bacterial community composition in the malaria mosquito's epithelia. Frontiers in Microbiology 6: 1500 doi

Thebaud G, Michalakis Y (2016) Comment on "Large bottleneck size in cauliflower mosaic virus populations during host plant colonization" by Monsion et al. (2008). PLoS Pathogens 12: e1005512 doi

Thuy DM, Peacock TP, Bich VTN, Fabrizio T, Hoang DN, Tho ND, Diep NT, Nguyen M, Hoa LNM, Trang HTT, Choisy M, Inui K, Newman S, Trung NV, van Doorn R, To TL, Iqbal M, Bryant JE (2016) Prevalence and diversity of H9N2 avian influenza in chickens of northern Vietnam, 2014. Infection, Genetics and Evolution 44: 530-540 doi

Tissot T, Arnal A, Jacqueline C, Poulin R, Lefèvre T, Mery F, Renaud F, Roche B, Massol F, Salzet M, Ewald P, Tasiemski A, Ujvari B, Thomas F (2016) Host manipulation by cancer cells: expectations, facts, and therapeutic implications. Bioessays 38: 276-285 doi

Tissot T, Ujvari B, Solary E, Lassus P, Roche B, Thomas F (2016) Do cell-autonomous and non-cell-autonomous effects drive the structure of tumor ecosystems? BBA Reviews on Cancer 1865: 147-154 doi

Ujvari B, Beckmann C, Biro PA, Arnal A, Tasiemski A, Massol F, Salzet M, Mery F, Boidin-Wichlacz C, Missé D, Renaud F, Vittecoq M, Tissot T, Roche B, Poulin R, Thomas F (2016) Cancer and life-history traits: lessons from host-parasite interactions. Parasitology 143: 533-541 doi

Ujvari B, Gatenby RA, Thomas F (2016) The evolutionary ecology of transmissible cancers. Infection, Genetics and Evolution 39: 293-303 doi

Ujvari B, Gatenby RA, Thomas F (2016) Transmissible cancers, are they more common than thought? Evolutionary Applications 9: 633-634 doi

Vantaux A, Lefèvre T, Cohuet A, Dabire KR, Roche B, Roux O (2016) Larval nutritional stress affects vector life history traits and human malaria transmission. Scientific Reports 6: 36778 doi

Vázquez AA, Lounnas M, Sánchez J, Alba A, Milesi A, Hurtrez-Boussès S (2016) Genetic and infective diversity of the liver fluke Fasciola hepatica (Trematoda: Digenea) from Cuba. Journal of Helminthology 90: 719-725 doi

Vittecoq M, Godreuil S, Prugnolle F, Durand P, Brazier L, Renaud N, Arnal A, Aberkane S, Jean-Pierre H, Gauthier-Clerc M, Thomas F, Renaud F (2016) Antimicrobial resistance in wildlife. Journal of Applied Ecology 53: 519-529 doi

Wichit S, Ferraris P, Choumet V, Missé D (2016) The effects of mosquito saliva on dengue virus infectivity in humans. Current Opinion in Virology 21: 139-145 doi

Willemsen A, Zwart MP, Higueras P, Sardanyes J, Elena SF (2016) Predicting the stability of homologous gene duplications in a plant RNA virus. Genome Biology and Evolution 8: 3065-3082 doi

Witkowski PT, Drexler JF, Kallies R, Lickova M, Bokorova S, Mananga GD, Szemes T, Leroy EM, Kruger DH, Drosten C, Klempa B (2016) Phylogenetic analysis of a newfound bat-borne hantavirus supports a laurasiatherian host association for ancestral mammalian hantaviruses. Infection, Genetics and Evolution 41: 113-119 doi   [- correction -]

Wurtz N, Papa A, Hukic M, Di Caro A, Leparc-Goffart I, Leroy E, Landini MP, Sekeyova Z, Dumler JS, Badescu D, Busquets N, Calistri A, Parolin C, Palu G, Christova I, Maurin M, La Scola B, Raoult D (2016) Survey of laboratory-acquired infections around the world in biosafety level 3 and 4 laboratories. European Journal of Clinical Microbiology & Infectious Diseases 35: 1247-1258 doi

Zhang ZL, Gu QY, Vasudevan AAJ, Hain A, Kloke BP, Hasheminasab S, Mulnaes D, Sato K, Cichutek K, Haussinger D, Bravo IG, Smits SHJ, Gohlke H, Münk C (2016) Determinants of FIV and HIV Vif sensitivity of feline APOBEC3 restriction factors. Retrovirology 13: 46 doi


Aberkane S, Compain F, Barraud O, Ouedraogo AS, Bouzinbi N, Vittecoq M, Jean-Pierre H, Decre D, Godreuil S (2015) Non-01/Non-0139 Vibrio cholerae avian isolate from France cocarrying the bla(VIM-1) and bla(VIM-4) genes. Antimicrobial Agents and Chemotherapy 59: 6594-6596 doi

Alizon S, Michalakis Y (2015) Adaptive virulence evolution: the good old fitness-based approach. Trends in Ecology & Evolution. 30: 248-254 doi

Arnal A, Ujvari B, Crespi B, Gatenby RA, Tissot T, Vittecoq M, Ewald PW, Casali A, Ducasse H, Jacqueline C, Missé D, Renaud F, Roche B, Thomas F (2015) Evolutionary perspective of cancer: myth, metaphors, and reality. Evolutionary Applications 8: 541-544 doi

Arnal A, Vittecoq M, Pearce-Duvet J, Gauthier-Clerc M, Boulinier T, Jourdain E (2015) Laridae: a neglected reservoir that could play a major role in avian influenza virus epidemiological dynamics. Critical Reviews in Microbiology 41: 508-519 doi

Ategbo S, Koumavor CK, Lekana-Douki SE, Leroy EM (2015) Emergence of G12 rotavirus diarrhea in childhood in Libreville. Archives De Pediatrie 22: 323-324 doi

Bernard E, Hamel R, Neyret A, Ekchariyawat P, Moles JP, Simmons G, Chazal N, Desprès P, Missé D, Briant L (2015) Human keratinocytes restrict chikungunya virus replication at a post-fusion step. Virology. 476: 1-10 doi

Boué V, Locatelli S, Boucher F, Ayouba A, Butel C, Esteban A, Okouga AP, Ndoungouet A, Motsch P, Le Flohic G, Ngari P, Prugnolle F, Ollomo B, Rouet F, Liégeois F (2015) High rate of simian immunodeficiency virus (SIV) infections in wild chimpanzees in northeastern Gabon. Viruses 7: 4997-5015 doi

Boundenga L, Ollomo B, Rougeron V, Mouele LY, Mve-Ondo B, Delicat-Loembet LM, Moukodoum ND, Okouga AP, Arnathau C, Elguero E, Durand P, Liégeois F, Boue V, Motsch P, Le Flohic G, Ndoungouet A, Paupy C, Ba CT, Renaud F, Prugnolle F (2015) Diversity of malaria parasites in great apes in Gabon. Malaria Journal. 14: 111 doi

Burgarella C, Gayral P, Ballenghien M, Bernard A, David P, Jarne P, Correa A, Hurtrez-Boussès S, Escobar J, Galtier N, Glemin S (2015) Molecular evolution of freshwater snails with contrasting mating systems. Molecular Biology and Evolution 32: 2403-2416 doi

Chaara D, Bañuls AL, Haouas N, Talignani L, Lami P, Mezhoud H, Harrat Z, Dedet JP, Babba H, Pratlong F (2015) Comparison of Leishmania killicki (syn. L. tropica) and Leishmania tropica population structure in Maghreb by microsatellite typing. PLoS Neglected Tropical Diseases 9: e0004204 doi

Chaara D, Ravel C, Bañuls AL, Haouas N, Lami P, Talignani L, El Baidouri F, Jaouadi K, Harrat Z, Dedet JP, Babba H, Pratlong F (2015) Evolutionary history of Leishmania killicki (synonymous Leishmania tropica) and taxonomic implications. Parasites & Vectors. 8 doi

Chetouhi C, Panek J, Bonhomme L, ElAlaoui H, Texier C, Langin T, de Bekker C, Urbach S, Demettre E, Missé D, Holzmuller P, Hughes DP, Zanzoni A, Brun C, Biron DG (2015) Cross-talk in host-parasite associations: what do past and recent proteomics approaches tell us? Infection, Genetics and Evolution 33: 84-94 doi

Corman VM, Baldwin HJ, Tateno AF, Zerbinati RM, Annan A, Owusu M, Nkrumah EE, Maganga GD, Oppong S, Adu-Sarkodie Y, Vallo P, da Silva LVRF, Leroy EM, Thiel V, van der Hoek L, Poon LLM, Tschapka M, Drosten C, Drexler JF (2015) Evidence for an ancestral association of human coronavirus 229E with bats. Journal of Virology 89: 11858-11870 doi

Dantec CF, Ducasse H, Capdevielle X, Fabreguettes O, Delzon S, Desprez-Loustau ML (2015) Escape of spring frost and disease through phenological variations in oak populations along elevation gradients. Journal of Ecology 103: 1044-1056 doi

Daoust SP, King KC, Brodeur J, Roitberg BD, Roche B, Thomas F (2015) Making the best of a bad situation: host partial resistance and bypass of behavioral manipulation by parasites? Trends in Parasitology 31: 413-418 doi

Delicat-Loembet L, Rougeron V, Ollomo B, Arnathau C, Roche B, Elguero E, Moukodoum ND, Okougha AP, Ondo BM, Boundenga L, Houze S, Galan M, Nkoghe D, Leroy EM, Durand P, Paupy C, Renaud F, Prugnolle F (2015) No evidence for ape Plasmodium infections in humans in Gabon. PLoS One 10: e0126933 doi

Dheilly NM, Maure F, Ravallec M, Galena R, Doyon J, Duval D, Leger L, Volkoff AN, Missé D, Nidelet S, Demolombe V, Brodeur J, Gourbal B, Thomas F, Mitta G (2015) Who is the puppet master? Replication of a parasitic wasp-associated virus correlates with host behaviour manipulation. Proceedings of the Royal Society of London, Series B. 282: 20142773 doi

Dheilly NM, Poulin R, Thomas F (2015) Biological warfare: microorganisms as drivers of host-parasite interactions. Infection, Genetics and Evolution 34: 251-259 doi

Drexler JF, Corman VM, Lukashev AN, van den Brand JMA, Gmyl AP, Brunink S, Rasche A, Seggewiss N, Feng H, Leijten LM, Vallo P, Kuiken T, Dotzauer A, Ulrich RG, Lemon SM, Drosten C, Hepatovirus Ecology Consortium (dont Leroy EM) (2015) Evolutionary origins of hepatitis A virus in small mammals. Proceedings of the National Academy of Sciences USA 112: 15190-15195 doi

Dreyfuss G, Correa AC, Djuikwo-Teukeng FF, Novobilsky A, Hoglund J, Pankrac J, Kasny M, Vignoles P, Hurtrez-Boussès S, Pointier JP, Rondelaud D (2015) Differences in the compatibility of infection between the liver flukes Fascioloides magna and Fasciola hepatica in a Colombian population of the snail Galba sp. Journal of Helminthology 89: 720-726 doi

Ducasse H, Arnal A, Vittecoq M, Daoust SP, Ujvari B, Jacqueline C, Tissot T, Ewald P, Gatenby RA, King KC, Bonhomme F, Brodeur J, Renaud F, Solary E, Roche B, Thomas F (2015) Cancer: an emergent property of disturbed resource-rich environments? Ecology meets personalized medicine. Evolutionary Applications 8: 527-540 doi

Ducasse H, Ujvari B, Solary E, Vittecoq M, Arnal A, Bernex F, Pirot N, Missé D, Bonhomme F, Renaud F, Thomas F, Roche B (2015) Can Peto's paradox be used as the null hypothesis to identify the role of evolution in natural resistance to cancer? a critical review. BMC Cancer 15: 792 doi

Duncan AB, Agnew P, Noel V, Michalakis Y (2015) The consequences of co-infections for parasite transmission in the mosquito Aedes aegypti. Journal of Animal Ecology. 84: 498-508 doi

Duron O, Noel V, McCoy KD, Bonazzi M, Sidi-Boumedine K, Morel O, Vavre F, Zenner L, Jourdain E, Durand P, Arnathau C, Renaud F, Trape JF, Biguezoton AS, Cremaschi J, Dietrich M, Léger E, Appelgren A, Dupraz M, Gómez-Díaz E, Diatta G, Dayo GK, Adakal H, Zoungrana S, Vial L, Chevillon C (2015) The recent evolution of a maternally-inherited endosymbiont of ticks led to the emergence of the Q fever pathogen, Coxiella burnetii. PLoS Pathogens11 : e1004892 doi

Ekchariyawat P, Hamel R, Bernard E, Wichit S, Surasombatpattana P, Talignani L, Thomas F, Choumet V, Yssel H, Despres P, Briant L, Missé D (2015) Inflammasome signaling pathways exert antiviral effect against chikungunya virus in human dermal fibroblasts. Infection, Genetics and Evolution 32: 401-408 doi

Elbir H, FotsoFotso A, Diatta G, Trape JF, Arnathau C, Renaud F, Durand P (2015) Ubiquitous bacteria Borrelia crocidurae in Western African ticks Ornithodoros sonrai. Parasites & Vectors 8: 477 doi

Elguero E, Delicat-Loembet LM, Rougeron V, Arnathau C, Roche B, Becquart P, Gonzalez JP, Nkoghe D, Sica L, Leroy EM, Durand P, Ayala FJ, Ollomo B, Renaud F, Prugnolle F (2015) Malaria continues to select for sickle cell trait in central africa. Proceedings of the National Academy of Sciences USA 112: 7051-7054 doi

Ezenwa VO, Prieur-Richard AH, Roche B, Bailly X, Becquart P, García-Peña GE, Hosseini PR, Keesing F, Rizzoli A, Suzán G, Vignuzzi M, Vittecoq M, Mills JN, Guégan JF (2015) Interdisciplinarity and infectious diseases: an Ebola case study. PLoS Pathogens 11: e1004992 doi

Garchitorena A, Guégan JF, Leger L, Eyangoh S, Marsollier L, Roche B (2015) Mycobacterium ulcerans dynamics in aquatic ecosystems are driven by a complex interplay of abiotic and biotic factors. Elife 4: e07616 doi

Garchitorena A, Ngonghala CN, Guégan JF, Texier G, Bellanger M, Bonds M, Roche B (2015) Economic inequality caused by feedbacks between poverty and the dynamics of a rare tropical disease: the case of Buruli ulcer in sub-Saharan Africa. Proceedings of the Royal Society of London, Series B 282: 20151426 doi

Garchitorena A, Ngonghala CN, Texier G, Landier J, Eyangoh S, Bonds MH, Guégan JF, Roche B (2015) Environmental transmission of Mycobacterium ulcerans drives dynamics of Buruli ulcer in endemic regions of Cameroon. Scientific Reports 5: 18055 doi

Gilabert A, Dedryver CA, Stoeckel S, Plantegenest M, Simon JC (2015) Longitudinal clines in the frequency distribution of 'super-clones' in an aphid crop pest. Bulletin of Entomological Research 105: 694-703 doi

Gutiérrez S, Pirolles E, Yvon M, Baecker V, Michalakis Y, Blanc S (2015) The multiplicity of cellular infection changes depending on the route of cell infection in a plant virus. Journal of Virology 89: 9665-9675 doi

Hamel R, Dejarnac O, Wichit S, Ekchariyawat P, Neyret A, Luplertlop N, Perera-Lecoin M, Surasombatpattana P, Talignani L, Thomas F, Cao-Lormeau V, Choumet V, Briant L, Desprès P, Amara A, Yssel H, Missé D (2015) Biology of Zika virus infection in human skin cells. Journal of Virology 89: 8880-8896 doi

Hartfield M, Alizon S (2015) Within-host stochastic emergence dynamics of immune-escape mutants. PLoS Computational Biology. 11 doi

Herbert A, Boundenga L, Meyer A, Moukodoum DN, Okouga AP, Arnathau C, Durand P, Magnus J, Ngoubangoye B, Willaume E, Ba CT, Rougeron V, Renaud F, Ollomo B, Prugnolle F (2015) Malaria-like symptoms associated with a natural Plasmodium reichenowi infection in a chimpanzee. Malaria Journal 14: 220 doi

Hoa LNM, Bryant JE, Choisy M, Nguyet LA, Bao NT, Trang NH, Chuc NTK, Toan TK, Saito T, Takemae N, Horby P, Wertheim H, Fox A (2015) Population susceptibility to a variant swine-origin influenza virus A(H3N2) in Vietnam, 2011-2012. Epidemiology and Infection 143: 2959-2964 doi

Labouba I, Leroy EM (2015) Ebola outbreaks in 2014. Journal of Clinical Virology. 64:109-110 doi

Lekana-Douki SE, Kombila-Koumavor C, Nkoghe D, Drosten C, Drexler JF, Leroy EM (2015) Molecular epidemiology of enteric viruses and genotyping of rotavirus A, adenovirus and astrovirus among children under 5 years old in Gabon. International Journal of Infectious Diseases 34: 90-95 doi

Leroy EM (2015) The emergence of Ebola virus in humans: a long process not yet fully understood. Bulletin de l Académie Nationale de Médecine 199: 651-671

Mombo IM, Berthet N, Lukashev AN, Bleicker T, Brünink S, Léger L, Atencia R, Cox D, Bouchier C, Durand P, Arnathau C, Brazier L, Fair JN, Schneider BS, Drexler JF, Prugnolle F, Drosten C, Renaud F, Leroy EM, Rougeron V (2015) First detection of an enterovirus C99 in a captive chimpanzee with acute flaccid paralysis, from the Tchimpounga Chimpanzee Rehabilitation Center, Republic of Congo. PLoS One 10: e0136700 doi

Murall CL, Bauch CT, Day T (2015) Could the human papillomavirus vaccines drive virulence evolution? Proceedings of the Royal Society of London, Series B. 282: 1069 doi

Mve-Ondo B, Nkoghe D, Arnathau C, Rougeron V, Bisvigou U, Mouele LY, Boundenga L, Durand P, Elguero E, Lemmers S, Delicat-Loembet LM, Diamella-Moukodoum N, Paupy C, Renaud F, Prugnolle F, Ollomo B (2015) Genetic diversity of Plasmodium falciparum isolates from Baka Pygmies and their Bantu neighbours in the north of Gabon. Malaria Journal 14: 395 doi

N'Dilimabaka N, Berthet N, Rougeron V, Mangombi JB, Durand P, Maganga GD, Bouchier C, Schneider BS, Fair J, Renaud F, Leroy EM (2015) Evidence of Lymphocytic Choriomeningitis virus (LCMV) in domestic mice in Gabon: Risk of emergence of LCMV encephalitis in central Africa. Journal of Virology. 89: 1456-1460. doi

Prudhomme J, Rahola N, Toty C, Cassan C, Roiz D, Vergnes B, Thierry M, Rioux JA, Alten B, Sereno D, Bañuls AL (2015) Ecology and spatiotemporal dynamics of sandflies in the Mediterranean Languedoc region (Roquedur area, Gard, France). Parasites & Vectors 8: 642 doi

Richard L, Rua R, Betsem E, Mouinga-Ondeme A, Kazanji M, Leroy E, Buseyne F, Afonso PV, Gessain (2015) Co-circulation of two envelope variants for both gorilla and chimpanzee simian foamy virus strains among humans and apes living in Central Africa. Retrovirology 12: doi

Richard L, Rua R, Betsem E, Mouinga-Ondeme A, Kazanji M, Leroy E, Njouom R, Buseyne F, Afonso PV, Gessain (2015) Cocirculation of two env molecular variants, of possible recombinant origin, in gorilla and chimpanzee simian foamy virus strains from Central Africa. Journal of Virology 89: 12480-12491 doi

Roche B, Léger L, L'Ambert G, Lacour G, Foussadier R, Besnard G, Barré-Cardi H, Simard F, Fontenille D (2015) The spread of Aedes albopictus in metropolitan France: contribution of environmental drivers and human activities and predictions for a near future. PLoS One. 10: e0125600 doi

Roche B, Morand S, Elguero E, Balenghien T, Guégan JF, Gaidet N (2015) Does host receptivity or host exposure drives dynamics of infectious diseases? The case of West Nile virus in wild birds. Infection, Genetics and Evolution 33: 11-19 doi

Roche B, Ujvari B, Thomas F (2015) Bad luck and cancer: does evolution spin the wheel of fortune? BioEssays. 37: 586-587 doi

Rougeron V, de Meeûs T, Bañuls AL (2015) A primer for Leishmania population genetic studies. Trends in Parasitology. 31: 52-59 doi

Rougeron V, de Meeûs T, Bañuls AL (2015) Response to Tibayrenc et al.: Can recombination in Leishmania parasites be so rare? Trends in Parasitology 31: 280-281 doi

Rougeron V, Feldmann H, Grard G, Becker S, Leroy EM (2015) Ebola and Marburg haemorrhagic fever. Journal of Clinical Virology. 64: 111-119 doi

Rougeron V, Sam IC, Caron M, Nkoghe D, Leroy E, Roques P (2015) Chikungunya, a paradigm of neglected tropical disease that emerged to be a new health global risk. Journal of Clinical Virology. 64: 144-152 doi

Roux O, Vantaux A, Roche B, Yameogo KB, Dabiré KR, Diabaté A, Simard F, Lefèvre T (2015) Evidence for carry-over effects of predator exposure on pathogen transmission potential. Proceedings of the Royal Society of London, Series B 282: 20152430 doi

Sicard A, Zeddam JL, Yvon M, Michalakis Y, Gutiérrez S, Blanc S (2015) Circulative nonpropagative aphid transmission of nanoviruses: an oversimplified view. Journal of Virology 89: 9719-9726 doi

Sofonea MT, Alizon S, Michalakis Y (2015) From within-host interactions to epidemiological competition: a general model for multiple infections. Philosophical Transactions of the Royal Society B: Biological Sciences 370: 20140303 doi

Stefan LM, Gómez-Díaz E, Elguero E, Proctor HC, McCoy KD, González-Solís J (2015) Niche partitioning of feather mites within a seabird host, Calonectris borealis. PLoS One 10: e0144728 doi

Suzán G, Garcia-Peña GE, Castro-Arellano I, Rico O, Rubio AV, Tolsá MJ, Roche B, Hosseini PR, Rizzoli A, Murray KA, Zambrana-Torrelio C, Vittecoq M, Bailly X, Aguirre AA, Daszak P, Prieur-Richard AH, Mills JN, Guégan JF (2015) Metacommunity and phylogenetic structure determine wildlife and zoonotic infectious disease patterns in time and space. Ecology and Evolution. 5: 865-873. doi

Tasiemski A, Massol F, Cuvillier-Hot V, Boidin-Wichlacz C, Roger E, Rodet F, Fournier I, Thomas F, Salzet M (2015) Reciprocal immune benefit based on complementary production of antibiotics by the leech Hirudo verbana and its gut symbiont Aeromonas veronii. Scientific Reports 5: 17498 doi

Thai PQ, Choisy M, Duong TN, Thiem VD, Yen NT, Hien NT, Weiss DJ, Boni MF, Horby P (2015) Seasonality of absolute humidity explains seasonality of influenza-like illness in Vietnam. Epidemics 13: 65-73 doi

Thomas F, Doyon J, Elguero E, Dujardin JP, Brodeur J, Roucher C, Roberta V, Missé D, Raymond M, Trape JF (2015) Plasmodium infections and fluctuating asymmetry among children and teenagers from Senegal. Infection, Genetics and Evolution 32: 97-101 doi

Trang NV, Choisy M, Nakagomi T, Chinh NTM, Doan YH, Yamashiro T, Bryant JE, Nakagomi O, Anh DD (2015) Determination of cut-off cycle threshold values in routine RT-PCR assays to assist differential diagnosis of norovirus in children hospitalized for acute gastroenteritis. Epidemiology and Infection 143: 3292-3299 doi

Vazquez AA, Sanchez J, Alba A, Pointier JP, Hurtrez-Boussès S (2015) Natural prevalence in Cuban populations of the lymnaeid snail Galba cubensis infected with the liver fluke Fasciola hepatica: small values do matter. Parasitology Research 114: 4205-4210 doi

Viet TL, Choisy M, Bryant JE, Trong DV, Quang TP, Horby P, Tran HN, Kieu HTT, Vu TN, Van KN, Quynh ML, Wertheim HFL (2015) A dengue outbreak on a floating village at Cat Ba island in Vietnam. BMC Public Health 15: 940 doi

Vittecoq M, Ducasse H, Arnal A, Møller AP, Ujvari B, Jacqueline CB, Tissot T, Missé D, Bernex, F, Pirot N, Lemberger K, Abadie J, Labrut S, Bonhomme F, Renaud F, Roche B, Thomas F (2015) Animal behaviour and cancer. Animal Behaviour. 101: 19-26 doi

Vittecoq M, Roche B, Cohen JM, Renaud F, Thomas F, Gauthier-Clerc M (2015) Does the weather play a role in the spread of pandemic influenza? A study of H1N1pdm09 infections in France during 2009-2010. Epidemiology and Infection 143: 3384-3393 doi

Vittecoq M, Roche B, Prugnolle F, Renaud F, Thomas F (2015) Les maladies infectieuses. de Boeck Solal, Paris

Wasinpiyamongkol L, Missé D, Luplertlop N (2015) Induction of defensin response to dengue infection in Aedes aegypti. Entomological Science. 18:199-206 doi


Alizon S (2014) Evolution of Disease Virulence. In Oxford Bibliographies in Evolutionary biology. Ed. Losos, J. Oxford University Press, New-York. doi

Alizon S, Lion S, Murall CL & Abbate JL (2014) Quantifying the epidemic spread of Ebola virus (EBOV) in Sierra Leone using phylodynamics. Virulence. 5: 825-827 doi

Becquart P, Mahlakoiv T, Nkoghe D & Leroy EM (2014) Identification of continuous human B-cell epitopes in the VP35, VP40, nucleoprotein and glycoprotein of Ebola virus. PLoS One. 9: 96360 doi

Briant L, Despres P, Choumet V & Missé D (2014) Role of skin immune cells on the host susceptibility to mosquito-borne viruses. Virology. 464: 26-32 doi

Bukreyev AA, Chandran K, Dolnik O, Dye JM, Ebihara H, Leroy EM, Muhlberger E, Netesov SV, Patterson JL, Paweska JT, Saphire EO, Smither SJ, Takada A, Towner JS, Volchkov VE, Warren TK, Kuhn JH (2014) Discussions and decisions of the 2012-2014 International Committee on Taxonomy of Viruses (ICTV) filoviridae study group, January 2012-June 2013. Archives of Virology 159: 821-830 doi

Choisy M & de Roode JC (2014) The ecology and evolution of animal medication: genetically fixed response versus phenotypic plasticity. American Naturalist. 184: S31-S46 doi

Constantin de Magny G, Hasan NA & Roche B (2014) How community ecology can improve our understanding of cholera dynamics. Frontiers in Microbiology. 5: 5 doi

Cousineau SV & Alizon S (2014) Parasite evolution in response to sex-based host heterogeneity in resistance and tolerance. Journal of Evolutionary Biology. 27: 2753-2766 doi

Delicat-Loembet LM, Elguero E, Arnathau C, Durand P, Ollomo B, Ossari S, Mezui-Me-Ndong J, Mboro TM, Becquart P, Nkoghe D, Leroy E, Sica L, Gonzalez JP, Prugnolle F & Renaud F (2014) Prevalence of the sickle cell trait in Gabon: a nationwide study. Infection, Genetics and Evolution. 25: 52-56 doi

Do TTT, Martens P, Luu NH, Wright P & Choisy M (2014) Climatic-driven seasonality of emerging dengue fever in Hanoi, Vietnam. BMC Public Health. 14: 1078 doi

Drexler JF, Grard G, Lukashev AN, Kozlovskaya LI, Bottcher S, Uslue G, Reimerink J, Gmyl AP, Taty-Taty R, Lekana-Douki SE, Nkoghe D, Eis-Hubinger AM, Diedrich S, Koopmans M, Leroy EM, Drosten C (2014) Robustness against serum neutralization of a poliovirus type 1 from a lethal epidemic of poliomyelitis in the Republic of Congo in 2010. Proceedings of the National Academy of Sciences USA 111: 12889-12894 doi

Fraser C, Lythgoe K, Leventhal GE, Shirreff G, Hollingsworth TD, Alizon S & Bonhoeffer S (2014) Virulence and pathogenesis of HIV-1 infection: an evolutionary perspective. Science. 343: 6117 doi

Garchitorena A, Roche B, Kamgang R, Ossomba J, Babonneau J, Landier J, Fontanet A, Flahault A, Eyangoh S, Guégan JF & Marsollier L (2014) Mycobacterium ulcerans ecological dynamics and its association with freshwater ecosystems and aquatic communities: results from a 12-month environmental survey in Cameroon. PLoS Neglected Tropical Diseases. 8: 2879 doi

Gilabert A, Simon JC, Dedryver CA & Plantegenest M (2014) Do ecological niches differ between sexual and asexual lineages of an aphid species? Evolutionary Ecology. 28: 1095-1104 doi

Gimonneau G, Tchioffo MT, Abate L, Boissiere A, Awono-Ambene PH, Nsango SE, Christen R & Morlais I (2014) Composition of Anopheles coluzzii and Anopheles gambiae microbiota from larval to adult stages. Infection, Genetics and Evolution. 28: 715-724 doi

Godreuil S, Leban N, Padilla A, Hamel R, Luplertlop N, Chauffour A, Vittecoq M, Hoh F, Thomas F, Sougakoff W, Lionne C, Yssel H & Missé D (2014) Aedesin: structure and antimicrobial activity against multidrug resistant bacterial strains. PLoS One. 9: e105441 doi

Grard G, Caron M, Mombo IM, Nkoghe D, Ondo SM, Jiolle D, Fontenille D, Paupy C & Leroy EM (2014) Zika Virus in Gabon (Central Africa) - 2007: A new threat from Aedes albopictus? PLoS Neglected Tropical Diseases. 8: 2681 doi

Hartfield M & Alizon S (2014) Epidemiological feedbacks affect evolutionary emergence of pathogens. American Naturalist. 183: E105-E117 doi pdf

Hartfield M & Glemin S (2014) Hitchhiking of deleterious alleles and the cost of adaptation in partially selfing species. Genetics. 196: 281-293 doi pdf

Hartfield M, Bull R, White PA, Lloyd A, Luciani F, Alizon S & the HITS investigators(2014) Evidence that hepatitis C virus genome partly controls infection outcome. Evolutionary Applications. 7: 533-547 doi

Hartfield M, Murall CL & Alizon S (2014) Clinical applications of pathogen phylogenies. Trends in Molecular Medicine. 20: 394-404 doi

Kuhn JH, Andersen KG, Baize S, Bao YM, Bavari S, Berthet N, Blinkova O, Brister JR, Clawson AN, Fair J, Gabriel M, Garry RF, Gire SK, Goba A, Gonzalez JP, Gunther S, Happi CT, Jahrling PB, Kapetshi J, Kobinger G, Kugelman JR, Leroy EM, Maganga GD, Mbala PK, Moses LM, Muyembe-Tamfum JJ, N'Faly M, Nichol ST, Omilabu SA, Palacios G, Park DJ, Paweska JT, Radoshitzky SR, Rossi CA, Sabeti PC, Schieffelin JS, Schoepp RJ, Sealfon R, Swanepoel R, Towner JS, Wada J, Wauquier N, Yozwiak NL, Formenty P (2014) Nomenclature- and database-compatible names for the two Ebola virus variants that emerged in Guinea and the Democratic Republic of the Congo in 2014. Viruses 6: 4760-4799 doi

Kuhn JH, Andersen KG, Bao YM, Bavari S, Becker S, Bennett RS, Bergman NH, Blinkova O, Bradfute S, Brister JR, Bukreyev A, Chandran K, Chepurnov AA, Davey RA, Dietzgen RG, Doggett NA, Dolnik O, Dye JM, Enterlein S, Fenimore PW, Formenty P, Freiberg AN, Garry RF, Garza NL, Gire SK, Gonzalez JP, Griffiths A, Happi CT, Hensley LE, Herbert AS, Hevey MC, Hoenen T, Honko AN, Ignatyev GM, Jahrling PB, Johnson JC, Johnson KM, Kindrachuk J, Klenk HD, Kobinger G, Kochel TJ, Lackemeyer MG, Lackner DF, Leroy EM, Lever MS, Muhlberger E, Netesov SV, Olinger GG, Omilabu SA, Palacios G, Panchal RG, Park DJ, Patterson JL, Paweska JT, Peters CJ, Pettitt J, Pitt L, Radoshitzky SR, Ryabchikova EI, Saphire EO, Sabeti PC, Sealfon R, Shestopalov AM, Smither SJ, Sullivan NJ, Swanepoel R, Takada A, Towner JS, van der Groen G, Volchkov VE, Volchkova VA, Wahl-Jensen V, Warren TK, Warfield KL, Weidmann M, Nichol ST (2014) Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names. Viruses 6: 3663-3682 doi

Kuhn JH, Bao YM, Bavari S, Becker S, Bradfute S, Brauburger K, Brister JR, Bukreyev AA, Cai YY, Chandran K, Davey RA, Dolnik O, Dye JM, Enterlein S, Gonzalez JP, Formenty P, Freiberg AN, Hensley LE, Hoenen T, Honko AN, Ignatyev GM, Jahrling PB, Johnson KM, Klenk HD, Kobinger G, Lackemeyer MG, Leroy EM, Lever MS, Muhlberger E, Netesov SV, Olinger GG, Palacios G, Patterson JL, Paweska JT, Pitt L, Radoshitzky SR, Ryabchikova EI, Saphire EO, Shestopalov AM, Smither SJ, Sullivan NJ, Swanepoel R, Takada A, Towner JS, van der Groen G, Volchkov VE, Volchkova VA, Wahl-Jensen V, Warren TK, Warfield KL, Weidmann M, Nichol ST (2014) Virus nomenclature below the species level: a standardized nomenclature for filovirus strains and variants rescued from cDNA. Archives of Virology 159: 1229-1237 doi

Le Goff G, Goodman SM, Elguero E & Robert V (2014) Survey of the mosquitoes (Diptera: Culicidae) of Mayotte. PLoS One. 9: 696 doi

Lekana-Douki SE, Nkoghe D, Drosten C, Ngoungou EB, Drexler JF & Leroy EM (2014) Viral etiology and seasonality of influenza-like illness in Gabon, March 2010 to June 2011. BMC Infectious Diseases. 14: doi

Leroy EM, Labouba I, Maganga GD & Berthet N (2014) Ebola in West Africa: the outbreak able to change many things. Clinical Microbiology and Infection. 20: O597-O599 doi

Liégeois F, Schmidt F, Boue V, Butel C, Mouacha F, Ngari P, Ondo BM, Leroy E, Heeney JL, Delaporte E, Peeters M, Rouet F (2014) Full-length genome analyses of two new simian immunodeficiency virus (SIV) strains from mustached monkeys (C. cephus) in Gabon illustrate a complex evolutionary history among the SIVmus/mon/gsn lineage. Viruses 6: 2880-2898 doi

Maganga GD, Bourgarel M, Nkoghe JO, N'Dilimabaka N, Drosten C, Paupy C, Morand S, Drexler JF & Leroy EM (2014) Identification of an unclassified paramyxovirus in Coleura afra: A potential case of host specificity. PLoS One. 9: 115588 doi

Maganga GD, Bourgarel M, Vallo P, Dallo TD, Ngoagouni C, Drexler JF, Drosten C, Nakoune ER, Leroy EM & Morand S (2014) Bat distribution size or shape as determinant of viral richness in African bats. PLoS One. 9: 100172 doi

Maganga GD, Iroungou BA, Bole-Feysot C, Leroy EM, Toure Ndouo FS, Berthet N (2014) Complete genome sequence of mumps virus genotype g from a vaccinated child in Franceville, southeastern Gabon, in 2013. Genome Announcements 2: doi

Maganga GD, Kapetshi J, Berthet N, Ilunga BK, Kabange F, Kingebeni PM, Mondonge V, Muyembe JJT, Bertherat E, Briand S, Cabore J, Epelboin A, Formenty P, Kobinger G, Gonzalez-Angulo L, Labouba I, Manuguerra JC, Okwo-Bele JM, Dye C & Leroy EM (2014) Ebola virus disease in the Democratic Republic of Congo. New England Journal of Medicine. 371: 2083-2091 doi

Maure F, Doyon J, Thomas F & Brodeur J (2014) Host behaviour manipulation as an evolutionary route towards attenuation of parasitoid virulence. Journal of Evolutionary Biology. 27: 2871-2875 doi

Menegon M, Durand P, Menard D, Legrand E, Picot S, Nour B, Davidyants V, Santi F & Severini C (2014) Genetic diversity and population structure of Plasmodium vivax isolates from Sudan, Madagascar, French Guiana and Armenia. Infection, Genetics and Evolution. 27: 244-249 doi

Methot PO & Alizon S (2014) What is a pathogen? Toward a process view of host-parasite interactions. Virulence. 5: 775-785 doi

Mombo IM, Berthet N, Bouchier C, Fair JN, Schneider BS, Renaud F, Leroy EM, Rougeron V (2014) Characterization of a genogroup I sapovirus isolated from chimpanzees in the republic of congo. Genome Announcements 2: doi

Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, Leroy E, Schneider BS, Fair JN, Martinez MA, Isa P, Crump JA, DeRisi JL, Sittler T, Hackett J, Miller S, Chiu CY (2014) A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples. Genome Research 24: 1180-1192 doi

Otto TD, Rayner JC, Bohme U, Pain A, Spottiswoode N, Sanders M, Quail M, Ollomo B, Renaud F, Thomas AW, Prugnolle F, Conway DJ, Newbold C & Berriman M (2014) Genome sequencing of chimpanzee malaria parasites reveals possible pathways of adaptation to human hosts. Nature Communications. 5: doi

Park AW, Vandekerkhove J & Michalakis Y (2014) Sex in an uncertain world: environmental stochasticity helps restore competitive balance between sexually and asexually reproducing populations. Journal of Evolutionary Biology. 27: 1650-1661 doi pdf

Petitdemange C, Wauquier N, Jacquet JM, Theodorou I, Leroy E, Vieillard V (2014) Association of HLA class-I and inhibitory KIR genotypes in Gabonese patients infected by chikungunya or dengue type-2 viruses. PLoS One 9: e108798 doi

Petitdemange C, Wauquier N, Rey J, Hervier B, Leroy E, Vieillard V (2014) Control of acute dengue virus infection by natural killer cells. Frontiers in Immunology 5: 209 doi

Rahola N, Makanga B, Yangari P, Jiolle D, Fontenille D, Renaud F, Ollomo B, Ayala D, Prugnolle F & Paupy C (2014) Description of Anopheles gabonensis, a new species potentially involved in rodent malaria transmission in Gabon, Central Africa. Infection, Genetics and Evolution. 28: 628-634 doi

Roche B, Broutin H, Choisy M, Godreuil S, Constantin de Magny G, Chevaleyre Y, Zucker JD, Breban R, Cazelles B & Simard F (2014) The niche reduction approach: an opportunity for optimal control of infectious diseases in low-income countries? BMC Public Health. 14: 753 doi

Sangare I, Dabire R, Yameogo B, Da DF, Michalakis Y & Cohuet A (2014) Stress dependent infection cost of the human malaria agent Plasmodium falciparum on its natural vector Anopheles coluzzii. Infection, Genetics and Evolution. 25: 57-65 doi

Surasombatpattana P, Ekchariyawat P, Hamel R, Patramool S, Thongrungkiat S, Denizot M, Delaunay P, Thomas F, Luplertlop N, Yssel H & Missé D (2014) Aedes aegypti saliva contains a prominent 34-kDa protein that strongly enhances dengue virus replication in human keratinocytes. Journal of Investigative Dermatology. 134: 281-284 doi

Sy VE, Agnew P, Sidobre C & Michalakis Y (2014) Reduced survival and reproductive success generates selection pressure for the dengue mosquito Aedes aegypti to evolve resistance against infection by the microsporidian parasite Vavraia culicis. Evolutionary Applications. 7: 468-479 doi pdf

Vazquez AA, Sanchez J, Pointier JP, Theron A, Hurtrez-Boussès S (2014) Fasciola hepatica in Cuba: compatibility of different isolates with two intermediate snail hosts, Galba cubensis and Pseudosuccinea columella. Journal of Helminthology 88: 434-440 doi

Vittecoq M, Thomas F, Jourdain E, Moutou F, Renaud F & Gauthier-Clerc M (2014) Risks of emerging infectious diseases: evolving threats in a changing area, the Mediterranean Basin. Transboundary and Emerging Diseases. 61: 17-27 doi

Yalcindag E, Rougeron V, Elguero E, Arnathau C, Durand P, Brisse S, Diancourt L, Aubouy A, Becquart P, D'Alessandro U, Fontenille D, Gamboa D, Maestre A, Menard D, Musset L, Noya O, Veron V, Wide A, Carme B, Legrand E, Chevillon C, Ayala FJ, Renaud F & Prugnolle F (2014) Patterns of selection on Plasmodium falciparum erythrocyte-binding antigens after the colonization of the New World. Molecular Ecology. 23: 1979-1993 doi

Yazdanparast E, Dos Anjos A, Garcia D, Loeuillet C, Shahbazkia HR & Vergnes B (2014) INsPECT, an open-source and versatile software for automated quantification of (Leishmania) Intracellular Parasites. PLoS Neglected Tropical Diseases. 8: e2850 doi


Alizon S & Fraser C (2013) Within-host and between-host evolutionary rates across the HIV-1 genome. Retrovirology. 10: 49 doi

Alizon S (2013) Co-infection and super-infection models in evolutionary epidemiology. Interface Focus. 3: 31 doi

Alizon S (2013) On the limits of interpreting some plastic responses through a cooperator/cheater prism. A comment on Harrison. Journal of Evolutionary Biology. 26: 2051-2056 doi

Alizon S (2013) Parasite co-transmission and the evolutionary epidemiology of virulence. Evolution. 67: 921-933 doi

Alizon S, de Roode JC & Michalakis Y (2013) Multiple infections and the evolution of virulence. Ecology Letters. 16: 556-567 doi

Bañuls AL, Thomas F & Renaud F (2013) Of parasites and men. Infection, Genetics and Evolution. 20: 61-70 doi

Berngruber TW, Froissart R, Choisy M & Gandon S (2013) Evolution of virulence in emerging epidemics. PLoS Pathogens. 9: e1003209 doi

Boissière A, Gimonneau G, Tchioffo MT, Abate L, Bayibeki A, Awono-Ambéné PH, Nsango SE & Morlais I (2013) Application of a qPCR Assay in the investigation of susceptibility to malaria infection of the M and S molecular forms of An. gambiae s.s. in Cameroon. PLoS One. 8: e54820 doi

Caron M, Grard G, Paupy C, Mombo IM, Nso BBB, Kassa FRK, Nkoghe D & Leroy EM (2013) First evidence of simultaneous circulation of three different dengue virus serotypes in Africa. PLoS One. 8: 78030 doi

Chiu C, Fair J & Leroy EM (2013) Bas-Congo virus: another deadly virus? Future Microbiology. 8: 139-141 doi

Daoust SP, Fahrig L, Martin AE & Thomas F (2013) From forest and agro-ecosystems to the microecosystems of the human body: what can landscape ecology tell us about tumor growth, metastasis, and treatment options? Evolutionary Applications. 6: 82-91 doi pdf

Dar Y, Lounnas M, Teukeng FFD, Mouzet R, Courtioux B, Hurtrez-Boussès S, Vignoles P, Dreyfuss G & Rondelaud D (2013) Variations in local adaptation of allopatric Fasciola hepatica to French Galba truncatula in relation to parasite origin. Parasitology Research. 112: 2543-2549 doi

Decaestecker E, De Gersem H, Michalakis Y & Raeymaekers JAM (2013) Damped long-term host-parasite Red Queen coevolutionary dynamics: a reflection of dilution effects? Ecology Letters. 16: 1455-1462 doi

Dietrich M, Beati L, Elguero E, Boulinier T & McCoy KD (2013) Body size and shape evolution in host races of the tick Ixodes uriae. Biological Journal of the Linnean Society. 108: 323-334 doi

Doucoure S, Cornelie S, Patramool S, Mouchet F, Demettre E, Seveno M, Dehecq JS, Rutee H, Herve JP, Favier F, Missé D, Gasque P & Remoué F (2013) First screening of Aedes albopictus immunogenic salivary proteins. Insect Molecular Biology. 22: 411-423 doi

Doumayrou J, Avellan A, Froissart R & Michalakis Y (2013) An experimental test of the transmission-virulence trade-off in a plant virus. Evolution. 67: 477-486 doi

Doumayrou J, Leblaye S, Froissart R & Michalakis Y (2013) Reduction of leaf area and symptom severity as proxies of disease-induced plant mortality: The example of the Cauliflower mosaic virus infecting two Brassicaceae hosts. Virus Research. 176: 91-100 doi

Drexler JF, Corman VM, Muller MA, Lukashev AN, Gmyl A, Coutard B, Adam A, Ritz D, Leijten LM, van Riel D, Kallies R, Klose SM, Gloza-Rausch F, Binger T, Annan A, Adu-Sarkodie Y, Oppong S, Bourgarel M, Rupp D, Hoffmann B, Schlegel M, Kummerer BM, Kruger DH, Schmidt-Chanasit J, Setien AA, Cottontail VM, Hemachudha T, Wacharapluesadee S, Osterrieder K, Bartenschlager R, Matthee S, Beer M, Kuiken T, Reusken C, Leroy EM, Ulrich RG & Drosten C (2013) Evidence for novel hepaciviruses in rodents. PLoS Pathogens. 9: 1003438 doi

Drexler JF, Geipel A, Konig A, Corman VM, van Riel D, Leijten LM, Bremer CM, Rasche A, Cottontail VM, Maganga GD, Schlegel M, Muller MA, Adam A, Klose SM, Carneiro AJB, Stocker A, Franke CR, Gloza-Rausch F, Geyer J, Annan A, Adu-Sarkodie Y, Oppong S, Binger T, Vallo P, Tschapka M, Ulrich RG, Gerlich WH, Leroy E, Kuiken T, Glebe D & Drosten C (2013) Bats carry pathogenic hepadnaviruses antigenically related to hepatitis B virus and capable of infecting human hepatocytes. Proceedings of the National Academy of Sciences USA. 110: 16151-16156 doi

Dubois F, Thomas F & Brodeur J (2013) When should a trophically transmitted parasite exploit host compensatory responses? Ecology and Evolution. 3: 2401-2408 doi

Gascuel F, Choisy M, Duplantier JM, Debarre F & Brouat C (2013) Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus. PLoS Computational Biology. 9: 1003039 doi

Gonzalez JP, Prugnolle F, Leroy E (2013) Men, primates, and germs: an ongoing affair. In, One Health: the Human-Animal-Environment Interfaces in Emerging Infectious Diseases: the Concept and Examples of a One Health Approach. Current Topics in Microbiology and Immunology, 365: 337-353 doi

Gutiérrez S, Michalakis Y, Van Munster M & Blanc S (2013) Plant feeding by insect vectors can affect life cycle, population genetics and evolution of plant viruses. Functional Ecology. 27: 610-622 doi

Hartfield M & Alizon S (2013) Introducing the outbreak threshold in epidemiology. PLoS Pathogens. 9: e1003277 doi pdf

Hochberg ME, Thomas F, Assenat E & Hibner U (2013) Preventive Evolutionary medicine of cancers. Evolutionary Applications. 6: 134-143 doi pdf

Kamp C, Moslonka-Lefebvre M & Alizon S (2013) Epidemic spread on weighted networks. PLoS Computational Biology. 9: e1003352 doi

Kuhn JH, Bao YM, Bavari S, Becker S, Bradfute S, Brister JR, Bukreyev AA, Cai YY, Chandran K, Davey RA, Dolnik O, Dye JM, Enterlein S, Gonzalez JP, Formenty P, Freiberg AN, Hensley LE, Honko AN, Ignatyev GM, Jahrling PB, Johnson KM, Klenk HD, Kobinger G, Lackemeyer MG, Leroy EM, Lever MS, Lofts LL, Muhlberger E, Netesov SV, Olinger GG, Palacios G, Patterson JL, Paweska JT, Pitt L, Radoshitzky SR, Ryabchikova EI, Saphire EO, Shestopalov AM, Smither SJ, Sullivan NJ, Swanepoel R, Takada A, Towner JS, van der Groen G, Volchkov VE, Wahl-Jensen V, Warren TK, Warfield KL, Weidmann M, Nichol ST (2013) Virus nomenclature below the species level: a standardized nomenclature for laboratory animal-adapted strains and variants of viruses assigned to the family Filoviridae. Archives of Virology 158: 1425-1432 doi

Kuhn JH, Bao YM, Bavari S, Becker S, Bradfute S, Brister JR, Bukreyev AA, Chandran K, Davey RA, Dolnik O, Dye JM, Enterlein S, Hensley LE, Honko AN, Jahrling PB, Johnson KM, Kobinger G, Leroy EM, Lever MS, Muhlberger E, Netesov SV, Olinger GG, Palacios G, Patterson JL, Paweska JT, Pitt L, Radoshitzky SR, Saphire EO, Smither SJ, Swanepoel R, Towner JS, van der Groen G, Volchkov VE, Wahl-Jensen V, Warren TK, Weidmann M, Nichol ST (2013) Virus nomenclature below the species level: a standardized nomenclature for natural variants of viruses assigned to the family Filoviridae. Archives of Virology 158: 301-311 doi

Le Coupanec A, Babin D, Fiette L, Jouvion G, Ave P, Missé D, Bouloy M & Choumet V (2013) Aedes mosquito saliva modulates Rift Valley fever virus pathogenicity. PLoS Neglected Tropical Diseases. 7: 2237 doi

Lekana-Douki SE, Mouinga-Ondeme A, Nkoghe D, Drosten C, Drexler JF, Kazanji M, Leroy EM (2013) Early introduction and delayed dissemination of pandemic influenza, Gabon. Emerging Infectious Diseases 19: 644-647 doi

Maganga GD, Verrier D, Zerbinati RM, Drosten C, Drexler JF & Leroy EM (2013) Molecular typing of PPRV strains detected during an outbreak in sheep and goats in south-eastern Gabon in 2011. Virology Journal. 10: 82 doi

Maneekan P, Leaungwutiwong P, Missé D & Luplertlop N (2013) T helper (TH) and TH2 cytokine expression profile in dengue and malaria infection using magnetic bead-based bio-plex assay. Southeast Asian Journal of Tropical Medicine and Public Health. 44: 31-36

Marie A, Boissière A, Tchioffo MT, Poinsignon A, Awono-Ambéné PH, Morlais I, Remoué F & Cornelie S (2013) Evaluation of a real-time quantitative PCR to measure the wild Plasmodium falciparum infectivity rate in salivary glands of Anopheles gambiae. Malaria Journal. 12: 224 doi

Maure F, Brodeur J, Droit A, Doyon J & Thomas F (2013) Bodyguard manipulation in a multipredator context: different processes, same effect. Behavioural Processes. 99: 81-86 doi

Maure F, Brodeur J, Hughes D & Thomas F (2013) How much energy should manipulative parasites leave to their hosts to ensure altered behaviours? Journal of Experimental Biology. 216: 43-46 doi

Maure F, Daoust SP, Brodeur J, Mitta G & Thomas F (2013) Diversity and evolution of bodyguard manipulation. Journal of Experimental Biology. 216: 36-42 doi

Nesi N, Kadjo B, Pourrut X, Leroy E, Shongo CP, Cruaud C & Hassanin A (2013) Molecular systematics and phylogeography of the tribe Myonycterini (Mammalia, Pteropodidae) inferred from mitochondrial and nuclear markers. Molecular Phylogenetics and Evolution. 66: 126-137 doi

Nsango SE, Pompon J, Xie T, Rademacher A, Fraiture M, Thoma M, Awono-Ambene PH, Moyou RS, Morlais I & Levashina EA (2013) AP-1/Fos-TGase2 axis mediates wounding-induced Plasmodium falciparum killing in Anopheles gambiae. Journal of Biological Chemistry. 288: 16145-16154 doi

Patramool S, Bernard E, Hamel R, Natthanej L, Chazal N, Surasombatpattana P, Ekchariyawat P, Daoust S, Thongrungkiat S, Thomas F, Briant L & Missé D (2013) Isolation of infectious chikungunya virus and dengue virus using anionic polymer-coated magnetic beads. Journal of virological methods. 193: 55-61 doi

Paupy C, Makanga B, Ollomo B, Rahola N, Durand P, Magnus J, Willaume E, Renaud F, Fontenille D & Prugnolle F (2013) Anopheles moucheti and Anopheles vinckei are candidate vectors of ape Plasmodium parasites, including Plasmodium praefalciparum in Gabon. PLoS One. 8: e57294 doi

Prugnolle F, Rougeron V, Becquart P, Berry A, Makanga B, Rahola N, Arnathau C, Ngoubangoye B, Menard S, Willaume E, Ayala FJ, Fontenille D, Ollomo B, Durand P, Paupy C & Renaud F (2013) Diversity, host switching and evolution of Plasmodium vivax infecting African great apes. Proceedings of the National Academy of Sciences USA. 110: 8123-8128 doi

Roche B, Benbow ME, Merritt R, Kimbirauskas R, McIntosh M, Small PLC, Williamson H & Guégan JF (2013) Identifying the Achilles heel of multi-host pathogens: the concept of keystone 'host' species illustrated by Mycobacterium ulcerans transmission. Environmental Research Letters. 8: 7 doi

Roche B, Rohani P, Dobson AP & Guégan JF (2013) The impact of community organization on vector-borne pathogens. American Naturalist. 181: 1-11 doi

Roche B, Sprouffske K, Hbid H, Missé D & Thomas F (2013) Peto's paradox revisited: theoretical evolutionary dynamics of cancer in wild populations. Evolutionary Applications. 6: 109-116 doi pdf

Rode NO, Landes J, Lievens EJP, Flaven E, Segard A, Jabbour-Zahab R, Michalakis Y, Agnew P, Vivares CP & Lenormand T (2013) Cytological, molecular and life cycle characterization of Anostracospora rigaudi n. g., n. sp and Enterocytospora artemiae n. g., n. sp., two new microsporidian parasites infecting gut tissues of the brine shrimp Artemia. Parasitology. 140: 1168-1185 doi pdf

Sangare I, Michalakis Y, Yameogo B, Dabire R, Morlais I & Cohuet A (2013) Studying fitness cost of Plasmodium falciparum infection in malaria vectors: validation of an appropriate negative control. Malaria Journal. 12: 2 doi

Schmit O, Adolfsson S, Vandekerkhove J, Rueda J, Bode SNS, Rossetti G, Michalakis Y, Jokela J, Martens K & Mesquita-Joanes F (2013) The distribution of sexual reproduction of the geographic parthenogen Eucypris virens (Crustacea: Ostracoda) matches environmental gradients in a temporary lake. Canadian Journal of Zoology. 91: 660-671 doi

Schmit O, Fukova I, Vandekerkhove J, Michalakis Y, Matzke-Karasz R, Rossetti G, Martens K & Mesquita-Joanes F (2013) Mate recognition as a reproductive barrier in sexual and parthenogenetic Eucypris virens (Crustacea, Ostracoda). Animal Behaviour. 85: 977-985 doi

Shirreff G, Alizon S, Cori A, Günthard H, Laeyendecker O, van Sighem A, Bezemer D & Fraser C (2013) How effectively can HIV phylogenies be used to measure heritability? Evolution, Medicine, and Public Health. 2013: 209-224 doi

Sicard A, Yvon M, Timchenko T, Gronenborn B, Michalakis Y, Gutierrez S & Blanc S (2013) Gene copy number is differentially regulated in a multipartite virus. Nature Communications. 4: 2248 doi

Tchioffo MT, Boissière A, Churcher TS, Abate L, Gimonneau G, Nsango SE, Awono-Ambene PH, Christen R, Berry A & Morlais I (2013) Modulation of malaria infection in Anopheles gambiae mosquitoes exposed to natural midgut bacteria. PLoS One. 8: e81663 doi

Thomas F, Fisher D, Fort P, Marie JP, Daoust S, Roche B, Grunau C, Cosseau C, Mitta G, Baghdiguian S, Rousset F, Lassus P, Assenat E, Gregoire D, Missé D, Lorz A, Billy F, Vainchenker W, Delhommeau F, Koscielny S, Itzykson R, Tang RP, Fava F, Ballesta A, Lepoutre T, Krasinska L, Dulic V, Raynaud P, Blache P, Quittau-Prevostel C, Vignal E, Trauchessec H, Perthame B, Clairambault J, Volpert V, Solary E, Hibner U & Hochberg ME (2013) Applying ecological and evolutionary theory to cancer: a long and winding road. Evolutionary Applications. 6: 1-10 doi pdf

Trape JF, Diatta G, Arnathau C, Bitam I, Sarih M, Belghyti D, Bouattour A, Elguero E, Vial L, Mane Y, Balde C, Pugnolle F, Chauvancy G, Mahe G, Granjon L, Duplantier JM, Durand P & Renaud F (2013) The epidemiology and geographic distribution of relapsing fever borreliosis in west and north Africa, with a review of the Ornithodoros erraticus complex (Acari: Ixodida). PLoS One. 8: 78473 doi

Vale PF, Choisy M & Little TJ (2013) Host nutrition alters the variance in parasite transmission potential. Biology Letters. 9: 1145 doi

Vittecoq M, Lecollinet S, Jourdain E, Thomas F, Blanchon T, Arnal A, Lowenski S & Gauthier-Clerc M (2013) Recent circulation of West Nile virus and potentially other closely related flaviviruses in southern France. Vector-Borne and Zoonotic Diseases. 13: 610-613 doi

Vittecoq M, Roche B, Daoust SP, Ducasse H, Missé D, Abadie J, Labrut S, Renaud F, Gauthier-Clerc M & Thomas F (2013) Cancer: a missing link in ecosystem functioning? Trends in Ecology & Evolution. 28: 628-635 doi


Alizon S & Magnus C (2012) Modelling the course of an HIV Infection: Insights from ecology and evolution. Viruses. 4: 1984-2013 doi

Boissiere A, Arnathau C, Duperray C, Berry L, Lachaud L, Renaud F, Durand P & Prugnolle F (2012) Isolation of Plasmodium falciparum by flow-cytometry: implications for single-trophozoite genotyping and parasite DNA purification for whole-genome high-throughput sequencing of archival samples. Malaria Journal. 11: 163 doi

Boissière A, Tchioffo MT, Bachar D, Abate L, Marie A, Nsango SE, Shahbazkia HR, Awono-Ambene PH, Levashina EA, Christen R & Morlais I (2012) Midgut microbiota of the malaria mosquito vector Anopheles gambiae and interactions with Plasmodium falciparum infection. PLoS Pathogens. 8: e1002742 doi

Broutin V, Bañuls AL, Aubry A, Keck N, Choisy M, Bernardet JF, Michel C, Raymond JC, Libert C, Barnaud A, Stragier P, Portaels F, Terru D, Belon C, Dereure O, Gutierrez C, Boschiroli ML, Van De Perre P, Cambau E & Godreuil S (2012) Genetic diversity and population structure of Mycobacterium marinum: new insights into host and environmental specificities. Journal of Clinical Microbiology. 50: 3627-3634 doi

Caron M, Paupy C, Grard G, Becquart P, Mombo I, Nso BBB, Kassa FK, Nkoghe D & Leroy EM (2012) Recent introduction and rapid dissemination of chikungunya virus and dengue virus serotype 2 associated with human and mosquito coinfections in Gabon, Central Africa. Clinical Infectious Diseases. 55: e45-e53 doi

Choisy M & Rohani P (2012) Changing spatial epidemiology of pertussis in continental USA. Proceedings of the Royal Society of London, Series B. 279: 4574-4581 doi

Constantin de Magny G, Thiaw W, Kumar V, Manga NM, Diop BM, Gueye L, Kamara M, Roche B, Murtugudde R & Colwell RR (2012) Cholera Outbreak in Senegal in 2005: Was Climate a Factor? PLoS One. 7: e44577 doi

Daoust SP, Schatz B, Missé D & Thomas F (2012) Ecology of Gordian knots in natural conditions. Invertebrate Biology. 131: 294-300 doi

Diatta G, Souidi Y, Granjon L, Arnathau C, Durand P, Chauvancy G, Mane Y, Sarih Mh, Belghyti D, Renaud F & Trape JF (2012) Epidemiology of tick-borne borreliosis in Morocco. PLoS Neglected Tropical Diseases. 6: 1810 doi

Doucoure S, Mouchet F, Cornelie S, DeHecq JS, Rutee AH, Roca Y, Walter A, Herve JP, Missé D, Favier F, Gasque P & Remoué F (2012) Evaluation of the human IgG antibody response to Aedes albopictus saliva as a new specific biomarker of exposure to vector bites. PLoS Neglected Tropical Diseases. 6: e1487 doi

Doucoure S, Mouchet F, Cournil A, Le Goff G, Cornelie S, Roca Y, Giraldez MG, Simon ZB, Loayza R, Missé D, Flores JV, Walter A, Rogier C, Herve JP & Remoué F (2012) Human antibody response to Aedes aegypti saliva in an urban population in Bolivia: A new biomarker of exposure to dengue vector bites. American Journal of Tropical Medicine and Hygiene. 87: 504-510 doi

Drexler JF, Corman VM, Muller MA, Maganga GD, Vallo P, Binger T, Gloza-Rausch F, Rasche A, Yordanov S, Seebens A, Oppong S, Sarkodie YA, Pongombo C, Lukashev AN, Schmidt-Chanasit J, Stocker A, Carneiro AJB, Erbar S, Maisner A, Fronhoffs F, Buettner R, Kalko EKV, Kruppa T, Franke CR, Kallies R, Yandoko ERN, Herrler G, Reusken C, Hassanin A, Kruger DH, Matthee S, Ulrich RG, Leroy EM & Drosten C (2012) Bats host major mammalian paramyxoviruses. Nature Communications. 3: 796 doi [- correction -]

Drexler JF, Seelen A, Corman VM, Tateno AF, Cottontail V, Zerbinati RM, Gloza-Rausch F, Klose SM, Adu-Sarkodie Y, Oppong SK, Kalko EKV, Osterman A, Rasche A, Adam A, Muller MA, Ulrich RG, Leroy EM, Lukashev AN, Drosten C (2012) Bats worldwide carry hepatitis E virus-related viruses that form a putative novel genus within the family Hepeviridae. Journal of Virology 86: 9134-9147 doi

Duncan AB, Agnew P, Noel V, Demettre E, Seveno M, Brizard JP & Michalakis Y (2012) Proteome of Aedes aegypti in response to infection and coinfection with microsporidian parasites. Ecology and Evolution. 3: 199 doi pdf

Gazanion E, Seblova V, Votypka J, Vergnes B, Garcia D, Volf P & Sereno D (2012) Leishmania infantum nicotinamidase is required for late-stage development in its natural sand fly vector, Phlebotomus perniciosus. International Journal for Parasitology. 42: 323-327 doi

Gimonneau G, Pombi M, Choisy M, Morand S, Dabire RK & Simard F (2012) Larval habitat segregation between the molecular forms of the mosquito Anopheles gambiae in a rice field area of Burkina Faso, West Africa. Medical and Veterinary Entomology. 26: 9-17 doi

Grard G, Fair JN, Lee D, Slikas E, Steffen I, Muyembe JJ, Sittler T, Veeraraghavan N, Ruby JG, Wang C, Makuwa M, Mulembakani P, Tesh RB, Mazet J, Rimoin AW, Taylor T, Schneider BS, Simmons G, Delwart E, Wolfe ND, Chiu CY & Leroy EM (2012) A novel rhabdovirus associated with acute hemorrhagic fever in Central Africa. PLoS Pathogens. 8: e1002924 doi   [- correction -]

Gutiérrez S, Michalakis Y & Blanc S (2012) Virus population bottlenecks during within-host progression and host-to-host transmission. Current Opinion in Virology. 2: 546–555 doi

Gutiérrez S, Yvon M, Pirolles E, Garzo E, Fereres A, Michalakis Y & Blanc S (2012) Circulating virus load determines the size of bottlenecks in viral populations progressing within a host. PLoS Pathogens. 8: e1003009 doi

Hartfield M, Otto SP & Keightley PD (2012) The maintenance of obligate sex in finite, structured populations subject to recurrent beneficial and deleterious mutation. Evolution. 66: 3658-3669 doi

Hughes D, Brodeur J & Thomas F (2012) Host manipulation by parasites. Oxford University Press.

Leroy E, Gonzalez JP (2012) Filovirus research in Gabon and Equatorial Africa: the experience of a research center in the heart of Africa. Viruses 4: 1592-1604 doi

Liégeois F, Boue V, Mouacha F, Butel C, Ondo BM, Pourrut X, Leroy E, Peeters M & Rouet F (2012) New STLV-3 strains and a divergent SIVmus strain identified in non-human primate bushmeat in Gabon. Retrovirology. 9: 28 doi

Lukashev AN, Drexler JF, Kotova VO, Amjaga EN, Reznik VI, Gmyl AP, Grard G, Taty RT, Trotsenko OE, Leroy EM, Drosten C (2012) Novel serotypes 105 and 116 are members of distinct subgroups of human enterovirus C. Journal of General Virology 93: 2357-2362 doi

Moslonka-Lefebvre M, Bonhoeffer S & Alizon S (2012) Weighting for sex acts to understand the spread of STI on networks. Journal of Theoretical Biology. 311: 46-53 doi [- correction -] pdf

Mouinga-Ondeme A, Caron M, Nkoghe D, Telfer P, Marx P, Saib A, Leroy E, Gonzalez JP, Gessain A & Kazanji M (2012) Cross-Species transmission of Simian Foamy virus to humans in rural Gabon, Central Africa. Journal of Virology. 86: 1255-1260 doi

Mouline K, Mamai W, Agnew P, Tchonfienet M, Brengues C, Dabire R, Robert V & Simard F (2012) Physiology and development of the M and S molecular forms of Anopheles gambiae in Burkina Faso (West Africa). Medical and Veterinary Entomology. 26: 447-454 doi pdf

Multeau C, Froissart R, Perrin A, Castelli I, Casartelli M & Ogliastro M (2012) Four amino acids of an insect densovirus capsid determine midgut tropism and virulence. Journal of Virology. 86: 5937-5941 doi pdf

Ndille EE, Doucoure S, Damien G, Mouchet F, Drame PM, Cornelie S, Noukpo H, Yamadjako S, Djenontin A, Moiroux N, Missé D, Akogbeto M, Corbel V, Henry MC, Chandre F, Baldet T & Remoué F (2012) First attempt to validate human IgG antibody response to Nterm-34kDa salivary peptide as biomarker for evaluating exposure to Aedes aegypti bites. PLoS Neglected Tropical Diseases. 6: 1905 doi

Nguyen TVA, Choisy M, Nguyen DH, Thanh HTT, Kim LTP, Phuong TTD, Philippe J, Nguyen TS, Ho ML, Tran SV, Bañuls AL & Dang DA (2012) High prevalence of Beijing and EAI4-VNM genotypes among M. tuberculosis isolates in Northern Vietnam: sampling effect, rural and urban disparities. PLoS One. 7: e45553 doi

Njouom R, Caron M, Besson G, Ndong-Atome GR, Makuwa M, Pouillot R, Nkoghe D, Leroy E, Kazanji M (2012) Phylogeography, risk factors and genetic history of hepatitis C virus in Gabon, Central Africa. PLoS One 7: e42002 doi

Nkoghe D, Kassa RF, Caron M, Grard G, Mombo I, Bikie B, Paupy C, Becquart P, Bisvigou U & Leroy EM (2012) Clinical forms of Chikungunya in Gabon, 2010. PLoS Neglected Tropical Diseases. 6: e1517 doi

Nkoghe D, Leroy EM, Toung-Mve M & Gonzalez JP (2012) Cutaneous manifestations of filovirus infections. International Journal of Dermatology. 51: 1037-1043 doi

Nkoghe D, Leroy EM, Toung-Mve M, Gonzalez JP (2012) Cutaneous manifestations of filovirus infections. International Journal of Dermatology 51: 1037-1043 doi

Nsango SE, Abate L, Thoma M, Pompon J, Fraiture M, Rademacher A, Berry A, Awono-Ambene PH, Levashina EA & Morlais I (2012) Genetic clonality of Plasmodium falciparum affects the outcome of infection in Anopheles gambiae. International Journal for Parasitology. 42: 589-595 doi

Patramool S, Choumet V, Surasombatpattana P, Sabatier L, Thomas F, Thongrungkiat S, Rabilloud T, Boulanger N, Biron DG & Missé D (2012) Update on the proteomics of major arthropod vectors of human and animal pathogens. Proteomics. 12: 3510-3523 doi

Paupy C, Kassa Kassa F, Caron M, Nkoghé D & Leroy EM (2012) A Chikungunya outbreak associated with the vector Aedes albopictus in remote villages of Gabon. Vector-Borne and Zoonotic Diseases. 12: 167-169 doi

Roche B, Dobson AP, Guégan JF & Rohani P (2012) Linking community and disease ecology: the impact of biodiversity on pathogen transmission. Philosophical Transactions of the Royal Society B: Biological Sciences. 367: 2807-2813 doi

Roche B, Hochberg ME, Caulin AF, Maley CC, Gatenby RA, Missé D & Thomas F (2012) Natural resistance to cancers: a Darwinian hypothesis to explain Peto's paradox. BMC Cancer. 12: 387 doi pdf

Surasombatpattana P, Patramool S, Luplertlop N, Yssel H & Missé D (2012) Aedes aegypti saliva enhances dengue virus infection of human keratinocytes by suppressing innate immune responses. Journal of Investigative Dermatology. 132: 2103-2105 doi

Thomas F, Daoust SP & Raymond M (2012) Can we understand modern humans without considering pathogens? Evolutionary Applications. 5: 368-379 doi pdf

Thomas F, Daoust SP, Elguero E & Raymond M (2012) Do mothers from rich and well-nourished countries bear more sons ? Journal of Evolutionary Medicine. 1: 1-5 pdf

Thomas F, Elguero E, Brodeur J, Roche B, Missé D & Raymond M (2012) Malignancies and high birth weight in human: which cancers could result from antagonistic pleiotropy? Journal of Evolutionary Medicine. 1: 5 pdf

Thomas F, Guégan JF & Renaud F (2012) Ecologie et évolution des systèmes parasites. De Boeck.

Thomas F, Lafferty KD, Brodeur J, Elguero E, Gauthier-Clerc M & Missé D (2012) Incidence of adult brain cancers is higher in countries where the protozoan parasite Toxoplasma gondii is common. Biology Letters. 8: 101-103 doi pdf

Vale PF, Choisy M, Froissart R, Sanjuan R & Gandon S (2012) The distribution of mutational fitness effects of phage phi X174 on different hosts. Evolution. 66: 3495-3507 doi

Vittecoq M, Elguero E, Lafferty KD, Roche B, Brodeur J, Gauthier-Clerc M, Missé D & Thomas F (2012) Brain cancer mortality rates increase with Toxoplasma gondii seroprevalence in France. Infection, Genetics and Evolution. 12: 496-498 doi pdf

Vittecoq M, Grandhomme V, Simon G, Herve S, Blanchon T, Renaud F, Thomas F, Gauthier-Clerc M & van der Werf S (2012) Study of influenza A virus in wild boars living in a major duck wintering site. Infection, Genetics and Evolution. 12: 483-486 doi pdf

Vittecoq M, Lafferty KD, Elguero E, Brodeur J, Gauthier-Clerc M, Missé D, Roche B & Thomas F (2012) Cat ownership is neither a strong predictor of Toxoplasma gondii infection nor a risk factor for brain cancer Reply. Biology Letters. 8: 1042-1042doi pdf

Wasinpiyamongkol L, Patramool S, Thongrungkiat S, Maneekan P, Sangmukdanan S, Missé D & Luplertlop N (2012) Protein expression in the salivary glands of dengue-infected Aedes aegypti mosquitoes and blood-feeding success. Southeast Asian Journal of Tropical Medicine and Public Health. 43: 1346-1357

Yalcindag E, Elguero E, Arnathau C, Durand P, Akiana J, Anderson TJ, Aubouy A, Balloux F, Besnard P, Bogreau H, Carnevale P, D'Alessandro U, Fontenille D, Gamboa D, Jombart T, Le Mire J, Leroy E, Maestre A, Mayxay M, Menard D, Musset L, Newton PN, Nkoghe D, Noya O, Ollomo B, Rogier C, Veron V, Wide A, Zakeri S, Carme B, Legrand E, Chevillon C, Ayala FJ, Renaud F & Prugnolle F (2012) Multiple independent introductions of Plasmodium falciparum in South America. Proceedings of the National Academy of Sciences USA. 109: 511-516 doi


Abbot P, Abe J, Alcock J, Alizon S, Alpedrinha JA, Andersson M, Andre JB, van Baalen M, Balloux F, Balshine S, Barton N, Beukeboom LW, Biernaskie JM, Bilde T, Borgia G, Breed M, Brown S, Bshary R, Buckling A, Burley NT, Burton-Chellew MN, Cant MA, Chapuisat M, Charnov EL, Clutton-Brock T, Cockburn A, Cole BJ, Colegrave N, Cosmides L, Couzin ID, Coyne JA, Creel S, Crespi B, Curry RL, Dall SR, Day T, Dickinson JL, Dugatkin LA, El Mouden C, Emlen ST, Evans J, Ferriere R, Field J, Foitzik S, Foster K, Foster WA, Fox CW, Gadau J, Gandon S, Gardner A, Gardner MG, Getty T, Goodisman MA, Grafen A, Grosberg R, Grozinger CM, Gouyon PH, Gwynne D, Harvey PH, Hatchwell BJ, Heinze J, Helantera H, Helms KR, Hill K, Jiricny N, Johnstone RA, Kacelnik A, Kiers ET, Kokko H, Komdeur J, Korb J, Kronauer D, Kummerli R, Lehmann L, Linksvayer TA, Lion S, Lyon B, Marshall JA, McElreath R, Michalakis Y, Michod RE, Mock D, Monnin T, Montgomerie R, Moore AJ, Mueller UG, Noe R, Okasha S, Pamilo P, Parker GA, Pedersen JS, Pen I, Pfennig D, Queller DC, Rankin DJ, Reece SE, Reeve HK, Reuter M, Roberts G, Robson SK, Roze D, Rousset F, Rueppell O, Sachs JL, Santorelli L, Schmid-Hempel P, Schwarz MP, Scott-Phillips T, Shellmann-Sherman J, Sherman PW, Shuker DM, Smith J, Spagna JC, Strassmann B, Suarez AV, Sundstrom L, Taborsky M, Taylor P, Thompson G, Tooby J, Tsutsui ND, Tsuji K, Turillazzi S, Ubeda F, Vargo EL, Voelkl B, Wenseleers T, West SA, West-Eberhard MJ, Westneat DF, Wiernasz DC, Wild G, Wrangham R, Young AJ, Zeh DW, Zeh JA & Zink A (2011) Inclusive fitness theory and eusociality. Nature. 471: E1-4; author reply E9-10 doi

Akue JP, Nkoghe D, Padilla C, Moussavou G, Moukana H, Mbou RA, Ollomo B & Leroy EM (2011) Epidemiology of concomitant infection due to Loa loa and Mansonella perstans in Gabon. PLoS Neglected Tropical Diseases. 5: e1329 doi

Alizon S & Lion S (2011) Within-host parasite cooperation and the evolution of virulence. Proceedings of the Royal Society of London, Series B. 278: 3738-3747 doi

Alizon S & Michalakis Y (2011) The transmission-virulence trade-off and superinfection: comments to Smith. Evolution. 65: 3633-3638 doi

Alizon S, Luciani F & Regoes RR (2011) Epidemiological and clinical consequences of within-host evolution. Trends in Microbiology. 19: 24-32 doi pdf

Barnabé C, De Meeûs T, Noireau F, Bosseno MF, Monje EM, Renaud F & Brenière SF (2011) Trypanosoma cruzi discrete typing units (DTUs): Microsatellite loci and population genetics of DTUs TcV and TcI in Bolivia and Peru. Infection, Genetics and Evolution. 11: 1752-1760 doi

Carthagena L, Becquart P, Hocini H, Kazatchkine MD, Bouhlal H & Belec L (2011) Modulation of HIV binding to epithelial cells and HIV transfer from immature dendritic cells to CD4 T lymphocytes by human lactoferrin and its major exposed LF-33 peptide. Open Virology Journal. 5: 27-34 doi

Correa AC, Escobar JS, Noya O, Velasquez LE, Gonzalez-Ramirez C, Hurtrez-Boussès S & Pointier JP (2011) Morphological and molecular characterization of Neotropic Lymnaeidae (Gastropoda: Lymnaeoidea), vectors of fasciolosis. Infection, Genetics and Evolution. 11: 1978-1988 doi

Day T, Alizon S & Mideo N (2011) Bridging scales in the evolution of infectious disease life histories: theory. Evolution. 65: 3448-3461 doi

de Roode JC, Fernandez de Castillejo CL, Faits T & Alizon S (2011) Virulence evolution in response to anti-infection resistance: toxic food plants can select for virulent parasites of monarch butterflies. Journal of Evolutionary Biology. 24: 712-722 doi

Fontaine A, Diouf I, Bakkali N, Missé D, Pages F, Fusai T, Rogier C & Almeras L (2011) Implication of haematophagous arthropod salivary proteins in host-vector interactions. Parasites & Vectors. 4: 187 doi

Gazanion E, Garcia D, Silvestre R, Gerard C, Guichou JF, Labesse G, Seveno M, Cordeiro-Da-Silva A, Ouaissi A, Sereno D & Vergnes B (2011) The Leishmania nicotinamidase is essential for NAD(+) production and parasite proliferation. Molecular Microbiology. 82: 21-38 doi

Gazanion E, Vergnes B, Seveno M, Garcia D, Oury B, Ait-Oudhia K, Ouaissi A & Sereno D (2011) In vitro activity of nicotinamide/antileishmanial drug combinations. Parasitology International. 60: 19-24 doi

Grard G, Biek R, Tamfum JJM, Fair J, Wolfe N, Formenty P, Paweska J & Leroy E (2011) Emergence of divergent Zaire ebola virus strains in Democratic Republic of the Congo in 2007 and 2008. Journal of Infectious Diseases. 204: S776-S784 doi

Grard G, Drexler JF, Fair J, Muyembe JJ, Wolfe ND, Drosten C & Leroy EM (2011) Re-emergence of Crimean-Congo hemorrhagic fever virus in Central Africa. PLoS Neglected Tropical Diseases. 5: e1350 doi

Guernaoui S, Garcia D, Boumezzough A, Fontenille D & Sereno D (2011) Preliminary study on the galectin molecular diversity in Moroccoan Phlebotomus papatasi sandfly populations. Journal of Vector Borne Diseases. 48: 67-71

Guernaoui S, Garcia D, Gazanion E, Ouhdouch Y, Boumezzough A, Pesson B, Fontenille D & Sereno D (2011) Bacterial flora as indicated by PCR-temperature gradient gel electrophoresis (TGGE) of 16S rDNA gene fragments from isolated guts of phlebotomine sand flies (Diptera: Psychodidae). Journal of Vector Ecology. 36: S144-S147 doi

Gutierrez A, Vazquez AA, Hevia Y, Sanchez J, Correa AC, Hurtrez-Boussès S, Pointier JP & Theron A (2011) First report of larval stages of Fasciola hepatica in a wild population of Pseudosuccinea columella from Cuba and the Caribbean. Journal of Helminthology. 85: 109-111 doi

Leroy E, Baize S, Gonzalez JP (2011) Ebola and marburg hemorrhagic fever viruses: update on filoviruses. Médecine tropicale 71: 111-21

Leroy EM, Becquart P, Wauquier N & Baize S (2011) Evidence for Ebola virus superantigen activity. Journal of Virology. 85: 4041-4042 doi

Leroy EM, Gonzalez JP & Baize S (2011) Ebola and Marburg haemorrhagic fever viruses: major scientific advances, but a relatively minor public health threat for Africa. Clinical Microbiology and Infection. 17: 946-976 doi

Loot G, Poulet N, Brosse S, Tudesque L, Thomas F & Blanchet S (2011) Determinants of life-history traits in a fish ectoparasite: a hierarchical analysis. Parasitology. 138: 848-857 doi

Luplertlop N, Surasombatpattana P, Patramool S, Dumas E, Wasinpiyamongkol L, Saune L, Hamel R, Bernard E, Sereno D, Thomas F, Piquemal D, Yssel H, Briant L & Missé D (2011) Induction of a peptide with activity against a broad spectrum of pathogens in the Aedes aegypti salivary gland, following Infection with Dengue Virus. PLoS Pathogens. 7: e1001252 doi

Maganga GD, Bourgarel M, Ella GE, Drexler JF, Gonzalez JP, Drosten C & Leroy EM (2011) Is Marburg virus enzootic in Gabon? Journal of Infectious Diseases. 204: S800-S803 doi

Marcombe S, Darriet F, Agnew P, Etienne M, Yp-Tcha MM, Yebakima A & Corbel V (2011) Field efficacy of new larvicide products for control of multi-resistant Aedes aegypti populations in Martinique (French West Indies). American Journal of Tropical Medicine and Hygiene. 84: 118-126 doi pdf

Marcombe S, Darriet F, Tolosa M, Agnew P, Duchon S, Etienne M, Yptcha M, Chandre F, Corbel V & Yébakima A (2011) Pyrethroid resistance reduces the efficacy of space sprays for dengue control on the island of Martinique (Caribbean). PLoS Neglected Tropical Diseases. 5: e1202 doi pdf

Maure F, Brodeur J, Ponlet N, Doyon J, Firlej A, Elguero E & Thomas F (2011) The cost of a bodyguard. Biology Letters. 7: 843-846 doi pdf

Nkoghe D, Akue JP, Gonzalez JP & Leroy EM (2011) Prevalence of Plasmodium falciparum infection in asymptomatic rural Gabonese populations. Malaria Journal. 10: 33 doi

Nkoghe D, Kone ML, Yada A & Leroy E (2011) A limited outbreak of Ebola haemorrhagic fever in Etoumbi, Republic of Congo, 2005. Transactions of the Royal Society of Tropical Medicine and Hygiene. 105: 466-472 doi

Nkoghe D, Padilla C, Becquart P, Wauquier N, Moussavou G, Akue JP, Ollomo B, Pourrut X, Souris M, Kazanji M, Gonzalez JP & Leroy E (2011) Risk factors for Zaire ebolavirus-specific IgG in rural Gabonese populations. Journal of Infectious Diseases. 204: S768-S775 doi

Patramool S, Surasombatpattana P, Luplertlop N, Seveno M, Choumet V, Thomas F & Missé D (2011) Proteomic analysis of an Aedes albopictus cell line infected with Dengue serotypes 1 and 3 viruses. Parasites & Vectors. 4: 138 doi

Petitdemange C, Becquart P, Wauquier N, Beziat V, Debre P, Leroy EM & Vieillard V (2011) Unconventional repertoire profile is imprinted during acute Chikungunya infection for natural killer cells polarization toward cytotoxicity. PLoS Pathogens. 7: e1002268 doi

Ponton F, Otalora-Luna F, Lefèvre T, Guerin PM, Lebarbenchon C, Duneau D, Biron DG & Thomas F (2011) Water-seeking behavior in worm-infected crickets and reversibility of parasitic manipulation. Behavioral Ecology. 22: 392-400 doi

Pourrut X, Nkoghe D, Gonzalez JP & Leroy E (2011) No evidence of dengue virus circulation in rural Gabon. Emerging Infectious Diseases. 17: 1568-1569 doi

Prugnolle F, Ayala F, Ollomo B, Arnathau C, Durand P & Renaud F (2011) Plasmodium falciparum is not as lonely as previously considered. Virulence. 2: 71-76 doi

Prugnolle F, Durand P, Ollomo B, Ayala FJ & Renaud F (2011) Reply to Sharp et al.: Host species sampling bias and Plasmodium falciparum origin paradigm shifts. Proceedings of the National Academy of Sciences USA. 108: E873-E873 doi

Prugnolle F, Durand P, Ollomo B, Duval L, Ariey F, Arnathau C, Gonzalez JP, Leroy E & Renaud F (2011) A fresh look at the origin of Plasmodium falciparum, the most malignant malaria agent. PLoS Pathogens. 7: e1001283 doi

Prugnolle F, Ollomo B, Durand P, Yalcindag E, Arnathau C, Elguero E, Berry A, Pourrut X, Gonzalez JP, Nkoghe D, Akiana J, Verrier D, Leroy E, Ayala FJ & Renaud F (2011) African monkeys are infected by Plasmodium falciparum nonhuman primate-specific strains. Proceedings of the National Academy of Sciences USA. 108: 11948-11953 doi

Roche B & Guégan JF (2011) Ecosystem dynamics, biological diversity and emerging infectious diseases. Comptes Rendus Biologies. 334: 385-392 doi pdf

Rougeron V, Bañuls AL, Carme B, Simon S, Couppie P, Nacher M, Hide M & De Meeus T (2011) Reproductive strategies and population structure in Leishmania: substantial amount of sex in Leishmania Viannia guyanensis. Molecular Ecology. 20: 3116-3127 doi

Rougeron V, Catzeflis F, Hide M, De Meeus T & Bañuls AL (2011) First clinical case of cutaneous leishmaniasis due to Leishmania (Viannia) braziliensis in a domestic cat from French Guiana. Veterinary Parasitology. 181: 325-328 doi

Rougeron V, de Meeûs T, Hide M, Le Falher G, Bucheton B, Dereure J, El-Safi S, Dessein A & Bañuls AL (2011) Multifaceted population structure and reproductive strategy in Leishmania donovani complex in one Sudanese village. PLoS Neglected Tropical Diseases. 5: e1448 doi

Senghor MW, Faye MN, Faye B, Diarra K, Elguero E, Gaye O, Bañuls AL & Niang AA (2011) Ecology of phlebotomine sand flies in the rural community of Mont Rolland (Thies region, Senegal): area of transmission of canine leishmaniasis. PLoS One. 6: e14773 doi

Surasombatpattana P, Hamel R, Patramool S, Luplertlop N, Thomas F, Despres P, Briant L, Yssel H & Missé D (2011) Dengue virus replication in infected human keratinocytes leads to activation of antiviral innate immune responses. Infection, Genetics and Evolution. 11: 1664-1673 doi

Thomas F, Brodeur J, Maure F, Franceschi N, Blanchet S & Rigaud T (2011) Intraspecific variability in host manipulation by parasites. Infection, Genetics and Evolution. 11: 262-269 doi

Thomas F, Elguero E, Brodeur J, Le Goff J & Missé D (2011) Herpes simplex virus type 2 and cancer: A medical geography approach. Infection, Genetics and Evolution. 11: 1239-1242 doi

Vittecoq M, Ottmann M, Renaud F, Thomas F & Gauthier-Clerc M (2011) Persistance of influenza A viruses based on environmental parameters. Virologie. 15: 371-379 pdf

Vuillaume F, Thebaud G, Urbino C, Forfert N, Granier M, Froissart R, Blanc S & Peterschmitt M (2011) Distribution of the phenotypic effects of random homologous recombination between two virus species. PLoS Pathogens. 7: e1002028 doi pdf

Wauquier N, Becquart P, Nkoghe D, Padilla C, Ndjoyi-Mbiguino A & Leroy EM (2011) The acute phase of Chikungunya virus infection in humans is associated with strong innate immunity and T CD8 cell activation. Journal of Infectious Diseases. 204: 115-123 doi


Adolfsson S, Michalakis Y, Paczesniak D, Bode SN, Butlin RK, Lamatsch DK, Martins MJ, Schmit O, Vandekerkhove J & Jokela J (2010) Evaluation of elevated ploidy and asexual reproduction as alternative explanations for geographic parthenogenesis in Eucypris virens ostracods. Evolution. 64: 986-997 pdf

Alizon S & Boldin B (2010) Within-host viral evolution in a heterogeneous environment: insights into the HIV co-receptor switch. Journal of Evolutionary Biology. 23: 2625-2635 doi pdf

Alizon S, von Wyl V, Stadler T, Kouyos RD, Yerly S, Hirschel B, Böni J, Shah C, Klimkait T, Furrer H, Rauch A, Vernazza PL, Bernasconi E, Battegay M, Bürgisser P, Telenti A, Günthard HF, Bonhoeffer S & the Swiss HIV Cohort Study (2010) Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load. PLoS Pathogens. 6: e1001123 pdf

Becquart P, Wauquier N, Mahlakoiv T, Nkoghe D, Padilla C, Souris M, Ollomo B, Gonzalez JP, De Lamballerie X, Kazanji M & Leroy EM (2010) High prevalence of both humoral and cellular immunity to Zaire ebolavirus among rural populations in Gabon. PLoS One. 5: e9126

Becquart P, Wauquier N, Nkoghe D, Ndjoyi-Mbiguino A, Padilla C, Souris M & Leroy EM (2010) Acute dengue virus 2 infection in Gabonese patients is associated with an early innate immune response, including strong interferon alpha production. BMC Infectious Diseases. 10: 356

Bob NS, Diop BM, Renaud F, Marrama L, Durand P, Tall A, Ka B, Ekala MT, Bouchier C, Mercereau-Puijalon O & Jambou R (2010) Parasite polymorphism and severe Malaria in Dakar (Senegal): a West African urban area. PLoS One. 5: e9817

Cezilly F, Thomas F, Medoc V, Perrot-Minnot MJ (2010) Host-manipulation by parasites with complex life cycles: adaptive or not? Trends in Parasitology. 26: 311-317

Chapuis MP, Crespin L, Estoup A, Auge-Sabatier A, Foucart A, Lecoq M & Michalakis Y (2010) Parental crowding influences life-history traits in Locusta migratoria females. Bulletin of Entomological Research. 100: 9-17 pdf

Chevillon C (2010) Evolution de pathogènes au sein du chapitre Activités humaines et biologie évolutive coordonné par Louis Bernatchez. In Biologie Evolutive. Eds. Raymond M, Lefèvre T & Thomas F. pp 700-706. De Boeck, collection MD

Choisy M & de Roode JC (2010) Mixed infections and the evolution of virulence: effects of resource competition, parasite plasticity, and impaired host immunity. American Naturalist. 175: E105-E118

Corrales RM, Mathieu-Daudé F, Garcia D, Brenière SF & Sereno D (2010) An experimental approach for the identification of conserved secreted proteins in Trypanosomatids. Journal of Biomedicine and Biotechnology. 752698 pdf

Correa AC, Escobar JS, Durand P, Renaud F, David P, Jarne P, Pointier JP & Hurtrez-Boussès S (2010) Bridging gaps in the molecular phylogeny of the Lymnaeidae (Gastropoda: Pulmonata), vectors of Fascioliasis. BMC Evolutionary Biology. 10: 381 pdf

Daoust SP, Mader BJ, Maure F, McLaughlin JD, Thomas F & Rau ME (2010) Experimental evidence of size/age-biased infection of Biomphalaria glabrata (Pulmonata: Planorbidae) by an incompatible parasite species: Consequences for biological control. Infection, Genetics and Evolution. 10: 1008-1012

Darriet F, Marcombe S, Etienne M, Yebakima A, Agnew P, Yp-Tcha MM & Corbel V (2010) Field evalutation of pyriproxyfen and spinosad mixture for the control of insecticide resistant Aedes aegypti in Martinique (French West Indies). Parasites & Vectors. 3: 88 pdf

Djogbénou L, Noel V & Agnew P (2010) Costs of insensitive acetylcholinesterase insecticide resistance for the malaria vector Anopheles gambiae homozygous for the G119S mutation. Malaria Journal. 9: 12 pdf

Echaubard P, Duron O, Agnew P, Sidobre C, Noel V, Weill M & Michalakis Y (2010) Rapid evolution of Wolbachia density in insecticide resistant Culex pipiens. Heredity. 104: 15-19 pdf

Elena SF & Froissart R (2010) New experimental and theoretical approaches towards the understanding of the emergence of viral infections Introduction. Philosophical Transactions of the Royal Society B: Biological Sciences. 365: 1867-1869 pdf

Faye B, Bañuls, AL, Bucheton B, Dione MM, Bassanganam O, Hide M, Dereure J, Choisy M, Ndiaye JL, Konaté O, Claire M, Senghor MW, Faye MN, Sy I, Niang AA, Molez JF, Victoir K, Marty P, Delaunay P, Knecht R, Mellul S, Diedhiou S & Gaye O (2010) Canine visceral leishmaniasis caused by Leishmania infantum in Senegal: risk of emergence in humans? Microbes and Infection. 14: 1219-1225 pdf

Froissart R, Doumayrou J, Vuillaume F, Alizon S & Michalakis Y (2010) The virulence-transmission trade-off in vector-borne plant viruses: a review of (non-)existing studies. Philosophical Transactions of the Royal Society B: Biological Sciences. 365: 1907-1918 pdf

Godreuil S, Renaud F, Choisy M, Depina JJ, Garnotel E, Morillon M, Van de Perre P & Bañuls AL (2010) Highly structured genetic diversity of the Mycobacterium tuberculosis population in Djibouti. Clinical Microbiology and Infection. 16: 1024-1026

Grard G, Drexler JF, Lekana-Douki S, Caron M, Lukashev A, Nkoghe D, Gonzalez JP, Drosten C & Leroy E (2010) Type 1 wild poliovirus and putative enterovirus 109 in an outbreak of acute flaccid paralysis in Congo, October-November 2010. Eurosurveillance. 15: 6-8

Gutiérrez S, Yvon M, Thébaud G, Monsion B, Michalakis Y & Blanc S (2010) Dynamics of the multiplicity of cellular infection in a plant virus. PLoS Pathogens. 6: e1001113 pdf

Helluy S & Thomas F (2010) Parasitic manipulation and neuroinflammation: Evidence from the system Microphallus papillorobustus (Trematoda) - Gammarus (Crustacea). Parasites & Vectors. 3: 38

Hurtrez-Boussès S, Hurtrez JE, Turpin H, Durand C, Durand P, de Meeûs T, Meunier C & Renaud F (2010) Hydrographic network structure and population genetic differentiation in a vector of fasciolosis, Galba truncatula. Infection, Genetics and Evolution. 10: 178-183

Lebarbenchon C, Chang CM, Grandhomme V, Dietrich M, Kayser Y, Elguero E, Renaud F, Thomas F, van der Werf S & Gauthier-Clerc M (2010) Avian influenza circulation in the Camargue (South of France) during the 2006-07 season. Avian Diseases. 54: S446-S449

Lebarbenchon C, Feare CJ, Renaud F, Thomas F & Gauthier-Clerc M (2010) Persistence of highly pathogenic avian influenza viruses in natural ecosystems. Emerging Infectious Diseases. 16: 1057-1062

Lefèvre T, Gouagna LC, Dabire KR, Elguero E, Fontenille D, Renaud F, Costantini C & Thomas F (2010) Beer consumption increases human attractiveness to malaria mosquitoes. PLoS One. 5: e9546 pdf

Loot G, Thomas F & Blanchet S (2010) 'Vicious circles' and disease spread: elements of discussion. Trends in Ecology & Evolution. 25: 131

Mercier A, Devillard S, Ngoubangoye B, Bonnabau H, Bañuls AL, Durand P, Salle B, Ajzenberg D & Darde ML (2010) Additional haplogroups of Toxoplasma gondii out of Africa: population structure and mouse-virulence of strains from Gabon. PLoS Neglected Tropical Diseases. 4: e876

Michalakis Y, Charmentier A, Gaillard JM, Sorci G, Tully T & O Ronce (2010) Evolution des traits d'histoire de vie. In Biologie Evolutive. Eds. Thomas F, Lefèvre T & Raymond M. pp. 339-386. De Boeck, Bruxelles.

Nkoghe D, Leroy E, Mve MT, Gonzalez JP (2010) Filoviruses: clinical manifestations. In, Mucocutaneous Manifestations of Viral Diseases. 2nd Edition. Tyring SK, Moore AY, Lupi O (Eds.) Pp 375-382

Park AW, Jokela J & Michalakis Y (2010) Parasites and deleterious mutations: interactions influencing the evolutionary maintenance of sex. Journal of Evolutionary Biology. 23: 1013-1023 pdf

Paupy C, Ollomo B, Kamgang B, Moutailler S, Rousset D, Demanou M, Herve JP, Leroy E, Simard F (2010) Comparative role of Aedes albopictus and Aedes aegypti in the emergence of Dengue and Chikungunya in Central Africa. Vector-Borne and Zoonotic Diseases 10: 259-266 pdf

Pourrut X, Nkoghe D, Paweska J, Leroy E (2010) First serological evidence of West Nile virus in human rural populations of Gabon. Virology Journal 7: 132 doi

Pourrut X, Nkoghe D, Souris M, Paupy C, Paweska J, Padilla C, Moussavou G & Leroy EM (2010) Rift Valley fever virus seroprevalence in human rural populations of Gabon. PLoS Neglected Tropical Diseases. 4: e763 pdf

Prugnolle F & de Meeûs T (2010) Apparent high recombination rates in clonal parasitic organisms due to inappropriate sampling design. Heredity. 104: 135-140

Prugnolle F, Durand P, Neel C, Ollomo B, Ayala FJ, Arnathau C, Etienne L, Mpoudi-Ngole E, Nkoghe D, Leroy E, Delaporte E, Peeters M & Renaud F (2010) African great apes are natural hosts of multiple related malaria species, including Plasmodium falciparum. Proceedings of the National Academy of Sciences USA. 107: 1458-1463 [-supporting information-] pdf

Prugnolle F, Durand P, Renaud F & Rousset F (2010) Effective size of the hierarchically structured populations of the agent of malaria: a coalescent-based model. Heredity. 104: 371-377

Rougeron V, de Meeûs T, Hide M, Waleckx E, Dereure J, Arevalo J, Llanos-Cuentas A & Bañuls AL (2010) A battery of 12 microsatellite markers for genetic analysis of the Leishmania (Viannia) guyanensis complex. Parasitology. 137: 1879-1884 pdf

Rougeron V, de Meeûs T, Ouraga SK, Hide M & Bañuls AL (2010) “Everything you always wanted to know about sex (but were afraid to ask)” in Leishmania after two decades of laboratory and field analyses. PLoS Pathogens. 6: e1001004

Tanabe K, Mita T, Jombart T, Eriksson A, Horibe S, Palacpac N, Ranford-Cartwright L, Sawai H, Sakihama N, Ohmae H, Nakamura M, Ferreira MU, Escalante AA, Prugnolle F, Bjorkman A, Farnert A, Kaneko A, Horii T, Manica A, Kishino H & Balloux F (2010) Plasmodium falciparum accompanied the human expansion out of Africa. Current Biology. 20: 1283-1289

Thomas F, Poulin R & Brodeur J (2010) Host manipulation by parasites: a multidimensional phenomenon. Oikos. 119: 1217-1223

Thomas F, Poulin R & Brodeur J (2010) Infection syndrome and multidimensionality: two terms for two different issues. Oikos. 119: 1230-1230

Wasinpiyamongkol L, Patramool S, Luplertlop N, Surasombatpattana P, Doucoure S, Mouchet F, Seveno M, Remoué F, Demettre E, Brizard JP, Jouin P, Biron DG, Thomas F & Missé D (2010) Blood-feeding and immunogenic Aedes aegypti saliva proteins. Proteomics. 10: 1906-1916 pdf

Wauquier N, Becquart P, Padilla C, Baize S & Leroy EM (2010) Human fatal zaire ebola virus infection is associated with an aberrant innate immunity and with massive lymphocyte apoptosis. PLoS Neglected Tropical Diseases. 4: e837 doi


Akue JP, Mestre NM, Nkoghe D, Leroy E, Mbou-Moutsimbi RA, Moukana H (2009) Prevalence of the human filaria Loa loa in Gabon country wide. Tropical Medicine & International Health 14: 170-171

Blanchet S, Mejean L, Bourque JF, Lek S, Thomas F, Marcogliese DJ, Dodson JJ & Loot G (2009) Why do parasitized hosts look different? Resolving the "chicken-egg" dilemma. Oecologia. 160: 37-47

Blanchet S, Thomas F & Loot G (2009) Reciprocal effects between host phenotype and pathogens: new insights from an old problem. Trends in Parasitology. 25: 364-369

Brochet AL, Guillemain M, Lebarbenchon C, Simon G, Fritz H, Green AJ, Renaud F, Thomas F & Gauthier-Clerc M (2009) The potential distance of highly pathogenic avian influenza virus dispersal by Mallard, Common Teal and Eurasian Pochard. Ecohealth. 6: 449-457

Chapuis MP, Loiseau A, Michalakis Y, Lecoq M, Franc A & Estoup A (2009) Outbreaks, gene flow and effective population size in the migratory locust, Locusta migratoria: a regional-scale comparative survey. Molecular Ecology. 18: 792-800 pdf

Constantin de Magny G, Renaud F, Durand P & Guégan JF (2009) Health ecology: a new tool, the macroscope. Ecology and evolution of parasitism. Oxford University Press. (Eds. Thomas F, Guégan JF & Renaud F). pp 129-148 pdf

de Meeûs T, Prugnolle F & Agnew P (2009) Asexual reproduction in infectious diseases. In Lost Sex. Eds. Schön I, Martens K & Dijk P. pp 517-533. Springer, Netherlands

Garnier S, Durand P, Arnathau C, Risterucci AM, Esparza-Salas R, Cellier-Holzem E & Sorci G (2009) New polymorphic microsatellite loci in the house sparrow, Passer domesticus. Molecular Ecology Resources. 9: 1063-1065

Kempf F, Boulinier T, de Meeûs T, Arnathau C & McCoy KD (2009) Recent evolution of host-associated divergence in the seabird tick Ixodes uriae. Molecular Ecology. 18: 4450-4462 pdf

Kempf F, de Meeûs T, Arnathau C, Degeilh B & McCoy KD (2009) Assortative pairing in Ixodes ricinus (Acari: Ixodidae), the European vector of Lyme borreliosis. Journal of Medical Entomology. 46: 471-474 pdf

Lebarbenchon C, Albespy F, Brochet AL, Grandhomme V, Renaud F, Fritz H, Green AJ, Thomas F, van der Werf S, Aubry P, Guillemain M & Gauthier-Clerc M (2009) Spread of avian influenza viruses by Common Teal (Anas crecca) in Europe. PLoS One. 4: 9

Lefèvre T, Adamo SA, Biron DG, Missé D, Hughes D & Thomas F (2009) Invasion of the body snatchers: The diversity and evolution of manipulative strategies in host-parasite interactions. Advances in Parasitology. 68: 45-83

Lefèvre T, Gouagna LC, Dabire KR, Elguero E, Fontenille D, Costantini C & Thomas F (2009) Evolutionary lability of odour-mediated host preference by the malaria vector Anopheles gambiae. Tropical Medicine & International Health. 14: 228-236 pdf

Lefèvre T, Gouagna LC, Dabire KR, Elguero E, Fontenille D, Renaud F, Costantini C & Thomas F (2009) Beyond nature and nurture: phenotypic plasticity in blood-feeding behavior of Anopheles gambiae s.s. when humans are not readily accessible. American Journal of Tropical Medicine and Hygiene. 81: 1023-1029 pdf

Lefèvre T, Lebarbenchon C, Gauthier-Clerc M, Missé D, Poulin R & Thomas F (2009) The ecological significance of manipulative parasites. Trends in Ecology & Evolution. 24: 41-48

Lekweiry KM, Abdallahi MO, Ba H, Arnathau C, Durand P, Trape JF & Salem AOM (2009) Preliminary study of malaria incidence in Nouakchott, Mauritania. Malaria Journal. 8: 92 pdf

Leroy EM, Epelboin A, Mondonge V, Pourrut X, Gonzalez JP, Muyembe-Tamfum JJ, Formenty P (2009) Human Ebola outbreak resulting from direct exposure to fruit bats in Luebo, Democratic Republic of Congo, 2007. Vector-Borne and Zoonotic Diseases 9: 723-728 doi

Makuwa M, Mintsa-Ndong A, Souquiere S, Nkoghe D, Leroy EM, Kazanji M (2009) Prevalence and molecular diversity of hepatitis B virus and hepatitis delta virus in urban and rural populations in northern Gabon in Central Africa. Journal of Clinical Microbiology 47: 2265-2268 doi

Marcombe S, Carron A, Darriet F, Etienne M, Agnew P, Tolosa M, Yp-Tcha MM, Lagneau C, Yébakima A & Corbel V (2009) Reduced efficacy of pyrethroid space sprays for dengue control in an area of Martinique with pyrethroid resistance. American Journal of Tropical Medicine and Hygiene. 80: 745-751 pdf

Michalakis Y & Renaud F (2009) Malaria: Evolution in vector control. Nature. 462: 298-300

Michalakis Y (2009) Parasitism and the evolution of life-history traits. In Ecology and evolution of parasitism. Eds. Thomas F, Guégan JF & Renaud F. pp. 19-30. Oxford University Press, Oxford.

Noranate N, Prugnolle F, Jouin H, Tall A, Marrama L, Sokhna C, Ekala MT, Guillotte M, Bischoff E, Bouchier C, Patarapotikul J, Ohashi, Trape JF, Rogier C & Mercereau-Puijalon O (2009) Population diversity and antibody selective pressure to Plasmodium falciparum MSP1 block2 locus in an African malaria-endemic setting. BMC Microbiology. 9: 219

Ollomo B, Durand P, Prugnolle F, Douzery E, Arnathau C, Nkoghe D, Leroy E & Renaud F (2009) A new malaria agent in African Hominids. PLoS Pathogens. 5: 5 pdf

Planade B, Lena JP, Li H, Plenet S, Guégan JF, Thomas F, Hurtrez-Boussès S, Renaud F & Joly P (2009) Tracking a heterosis effect in the field: tadpole resistance to parasites in the water frog hybridogenetic complex. Parasitology. 136: 1003-1013 pdf

Ponton F, Duneau D, Sanchez MI, Courtiol A, Terekhin AT, Budilova EV, Renaud F & Thomas F (2009) Effect of parasite-induced behavioral alterations on juvenile development. Behavioral Ecology. 20: 1020-1025

Pourrut X, Souris M, Towner JS, Rollin PE, Nichol ST, Gonzalez JP, Leroy E (2009) Large serological survey showing cocirculation of Ebola and Marburg viruses in Gabonese bat populations, and a high seroprevalence of both viruses in Rousettus aegyptiacus. BMC Infectious Diseases 9: 159 doi

Prugnolle F & Chevillon C (2009) Evolution adaptative des pathogènes, identification des mécanismes et conséquences épidémiologiques. In Introduction à l'épidémiologie intégrative des maladies infectieuses et parasitaire. (Eds. Guégan J & Choisy M). pp. 311-345. de Boeck.

Prugnolle F, Lefèvre T, Renaud F, Møller AP, Missé D & Thomas F (2009) Infection and body odours: Evolutionary and medical perspectives. Infection, Genetics and Evolution. 9: 1006-1009

Pumpaibool T, Arnathau C, Durand P, Kanchanakhan N, Siripoon N, Suegorn A, Sitthiamorn C, Renaud F & Harnyuttanakorn P (2009) Genetic diversity and population structure of Plasmodium falciparum in Thailand, a low transmission country. Malaria Journal. 8: 155 pdf

Roche B, Lebarbenchon C, Gauthier-Clerc M, Chang CM, Thomas F, Renaud F, van der Werf S & Guégan JF (2009) Water-borne transmission drives avian influenza dynamics in wild birds: The case of the 2005-2006 epidemics in the Camargue area. Infection, Genetics and Evolution. 9: 800-805 pdf

Rougeron V, de Meeûs T, Hide M, Waleckx E, Bermudez H, Arevalo J, Llanos-Cuentas A, Dujardin JC, de Doncker S, Le Ray D, Ayala FJ & Bañuls AL (2009) Extreme inbreeding in Leishmania braziliensis. Proceedings of the National Academy of Sciences USA. 106: 10224-10229 pdf

Sanchez MI, Thomas F, Perrot-Minnot MJ, Biron DG, Bertrand-Michel J & Missé D (2009) Neurological and physiological disorders in Artemia harboring manipulative cestodes. Journal of Parasitology. 95: 20-24


Barbazan P, Thitithanyanont A, Missé D, Dubot A, Bosc P, Luangsri N, Gonzalez JP & Kittayapong P (2008) Detection of H5N1 avian influenza virus from mosquitoes collected in an infected poultry farm in Thailand. Vector-Borne and Zoonotic Diseases. 8: 105-109

Berticat C, Bonnet J, Duchon S, Agnew P, Weill M & Corbel V (2008) Costs and benefits of multiple resistance to insecticides for Culex quinquefasciatus mosquitoes. BMC Evolutionary Biology. 8: 104 doi pdf

Brou T, Broutin H, Elguero E, Asse H & Guégan JF (2008) Landscape diversity related to Buruli ulcer disease in Cote d'Ivoire. PLoS Neglected Tropical Diseases. 2: e271 pdf

Chansac BLM, Missé D, Richon C, Vergnon I, Kubin M, Soria JC, Moretta A, Chouaib S & Mami-Chouaib F (2008) Potentiation of NK cell-mediated cytotoxicity in human lung adenocarcinoma: role of NKG2D-dependent pathway. International Immunology. 20: 801-810

Chapuis MP, Estoup A, Augé-Sabatier A, Foucart A, Lecoq M & Michalakis Y (2008) Genetic variation for parental effects on the propensity to gregarize in Locusta migratoria. BMC Evolutionary Biology. 8: 37 pdf

Chapuis MP, Lecoq M, Michalakis Y, Loiseau A, Sword GA, Piry S & Estoup A (2008) Do outbreaks affect population structure? A worldwide survey in Locusta migratoria, a pest plagued by microsatellite null alleles. Molecular Ecology. 17: 3640 pdf

Charpentier MJ, Prugnolle F, Gimenez O & Widdig A (2008) Genetic heterozygosity and sociality in a primate species. Behavioural Genetics. 38: 151-158

Chevillon C, Briant L, Renaud F & Devaux C (2008) The Chikungunya threat: an ecological and evolutionary perspective. Trends in Microbiology. 16: 80-88 pdf

Constantin de Magny G, Renaud F, Durand P, Guégan JF (2008) Ecology of health: the macroscope as a new tool! In Ecology and Evolution of Parasitized Systems. Eds F Thomas, JF Guègan & F Renaud. pp.129-138 Oxford University Press

Coutard B, Gorbalenya AE, Snijder EJ, Leontovich AM, Poupon A, De Lamballerie X, Charrel R, Gould EA, Gunther S, Norder H, Klempa B, Bourhy H, Rohayem J, L'Hermite E, Nordlund P, Stuart DI, Owens RJ, Grimes JM, Tucker PA, Bolognesi M, Mattevi A, Coll M, Jones TA, Aqvist J, Unge T, Hilgenfeld R, Bricogne G, Neyts J, La Colla P, Puerstinger G, Gonzalez JP, Leroy E, Cambillau C, Romette JL, Canard B (2008) The VIZIER project: preparedness against pathogenic RNA viruses. Antiviral Research 78: 37-46 doi

Davoust B, Normand T, Bourry O, Dang H, Leroy E, Bourdoiseau G (2008) Epidemiological survey on gastro-intestinal and blood-borne helminths of dogs in north-east Gabon. Onderstepoort Journal of Veterinary Research 75: 359-364

de Lamballerie X, Leroy E, Charrel RN, Ttsetsarkin K, Higgs S, Gould E (2008) Chikungunya virus adapts to tiger mosquito via evolutionary convergence: a sign of things to come? Virology Journal 5: 33 doi

Garamszegi LZ, Hirschenhauser K, Bokony V, Eens M, Hurtrez-Boussès S, Møller AP, Oliveira RF & Wingfield JC (2008) Latitudinal distribution, migration, and testosterone levels in birds. American Naturalist. 172: 533-546

Gavrilets S & Michalakis Y (2008) Effects of environmental heterogeneity on victim-exploiter coevolution. Evolution. 62: 3100-3116 pdf

Joly P, Guesdon V, Fromont E, Plenet S, Grolet O, Guégan JF, Hurtrez-Boussès S, Thomas F & Renaud F (2008) Heterozygosity and parasite intensity: lung parasites in the water frog hybridization complex. Parasitology. 135: 95-104

Lebarbenchon C, Brown SP, Poulin R, Gauthier-Clerc M & Thomas F (2008) Evolution of pathogens in a man-made world. Molecular Ecology. 17: 475-484

Lefèvre T & Thomas F (2008) Behind the scene, something else is pulling the strings: emphasizing parasitic manipulation in vector-borne diseases. Infection, Genetics and Evolution. 8: 504-519 pdf

Lefèvre T, Roche B, Poulin R, Hurd H, Renaud F & Thomas F (2008) Exploiting host compensatory responses: the 'must' of manipulation? Trends in Parasitology. 24: 435-439

Lefèvre T, Thomas F, Ravel S, Patrel D, Renault L, Le Bourligu L, Cuny G & Biron DG (2008) Trypanosoma brucei brucei induces alteration in the head proteome of the tsetse fly vector Glossina palpalis gambiensis. Insect Molecular Biology. 16: 651-660 pdf

Liégeois F, Lafay B, Formenty P, Locatelli S, Courgnaud V, Delaporte E & Peeters M (2008) Full-length genome characteriszation of a novel Simian Innumodeficiency Virus Lineage (SIVolc) from Olive Colobus (Procolobus verus) and New SIVwrcPbb strains from Western Red Colobus (Piliocolobus badius badius) from the Tai forest in Ivory Coast. Journal of Virology. 83: 428-439

Liégeois F, Lafay B, Switzer WM, Locatelli S, Mpoudi-Ngole E, Loul S, Heneine W, Delaporte E & Peeters M (2008) Identification and molecular characterization of new STLV-1 and STLV-3 strains in wild-caught nonhuman primates in Cameroon. Virology. 371: 405-417

Locatelli S, Lafay B, Liégeois F, Ting N, Delaporte E & Peeters M (2008) Full molecular characterization of a simian immunodeficiency virus, SIVwrcpbt from Temminck's red colobus (Piliocolobus badius temminckii) from Abuko Nature Reserve, The Gambia. Virology. 376: 90-100

Locatelli S, Liégeois F, Lafay B, Roeder AD, Bruford MW, Formenty P, Noe R, Delaporte E & Peeters M (2008) Prevalence and genetic diversity of simian immunodeficiency virus infection in wild red colobus monkeys (Piliocolobus badius badius) from the Tai Forest, Cote d'Ivoire. Folia Primatologica. 79: 353-353

Locatelli S, Liégeois F, Lafay B, Roeder AD, Bruford MW, Formenty P, Noe R, Delaporte E & Peeters M (2008) Prevalence and genetic diversity of simian immunodeficiency virus infection in wild-living red colobus monkeys (Piliocolobus badius badius) from the Tai Forest, Cote d'Ivoire SIV wrc in wild-living western red colobus monkeys. Infection, Genetics and Evolution. 8: 1-14

Luplertlop N & Missé D (2008) MMP cellular responses to dengue virus infection-induced vascular leakage. Japanese Journal of Infectious Diseases. 61: 298-301

Michalakis Y, Bedhomme S, Biron DG, Rivero A, Sidobre C & Agnew P (2008) Virulence and resistance in a mosquito-microsporidium interaction. Evolutionary Applications. 1: 49-56 pdf

Molina S, Missé D, Roche S, Badiou S, Cristol JP, Bonfils C, Dierick JF, Veas F, Levayer T, Bonnefont-Rousselot D, Maurel P, Coste J & Fournier-Wirth C (2008) Identification of apolipoprotein C-III as a potential plasmatic biomarker associated with the resolution of hepatitis C virus infection. Proteomics Clinical Applications. 2: 751-761

Monsion B, Froissart R, Michalakis Y & Blanc S (2008) Large bottleneck size in Cauliflower Mosaic Virus populations during host plant colonization. PLoS Pathogens. 4: e1000174 pdf

Olivieri I, Singer MC, Magalhaes S, Courtiol A, Dubois Y, Carbonell D, Justy F, Beldade P, Parmesan C & Michalakis Y (2008) Genetic, ecological, behavioral, and geographic differentiation of populations in a thistle weevil: implications for speciation and biocontrol. Evolutionary Applications. 1: 112-128 pdf

Poulin R & Thomas F (2008) Epigenetic effects of infection on the phenotype of host offspring: parasites reaching across host generations. Oikos. 117: 331-335 pdf

Prugnolle F & de Meeûs T (2008) The impact of clonality on parasite population genetic structure. Parasite. 15: 455-457

Prugnolle F, Choisy M & de Meeûs T (2008) CLONALITY V.0.4: a randomization-based program to test for heterozygosity-genet size relationships in clonal organisms. Molecular Ecology Resources. 8: 954-956

Prugnolle F, Durand P, Jacob K, Razakandrainibe F, Arnathau C, Villarreal D, Rousset F, de Meeûs T & Renaud F (2008) A comparison of Anopheles gambiae and Plasmodium falciparum genetic structure over space and time. Microbes and Infection. 10: 269-275 pdf

Prugnolle F, McGee K, Keebler J & Awadalla P (2008) Selection shapes malaria genomes and drives divergence between pathogens infecting hominids versus rodents. BMC Evolutionary Biology. 8: 223

Roche B, Guégan JF & Bousquet F (2008) Multi-agent systems in epidemiology: a first step for computational biology in the study of vector-borne disease transmission. BMC Informatics. 9: 435

Rougeron V, Waleckx E, Hide M, de Meeûs T, Arevalo J, Llanos-Cuentas A & Bañuls AL (2008) A set of 12 microsatellite loci for genetic studies of Leishmania braziliensis. Molecular Ecology Notes. 8: 351-353 pdf

Sanchez MI, Ponton F, Missé D, Hugues D & Thomas F (2008) Hairworm response to notonectid attacks. Animal Behaviour. 75: 823-826 pdf

Sanchez MI, Ponton F, Schmidt-Rhaesa A, Hughes DP, Missé D & Thomas F (2008) Two steps to suicide in crickets harbouring hairworms. Animal Behaviour. 76: 1621-1624


Akue JPM, Moukana H, Nkoghe D, Leroy E, Mbou-Moutsimbi R (2007) Prevalence and density of microfilaria in a Loa loa endemic zone of Gabon. Tropical Medicine & International Health 12: 134-134

Annan Z, Durand P, Ayala FJ, Arnathau C, Awono-Ambene P, Simard F, Razakandrainibe FG, Koella JC, Fontenille D & Renaud F (2007) Population genetic structure of Plasmodium falciparum in the two main African vectors, Anopheles gambiae and Anopheles funestus. Proceedings of the National Academy of Sciences USA. 104: 7987-7992 pdf

Bañuls AL, Hide M & Prugnolle F (2007) Leishmania and Leishmaniases: a parasite genetic update and advances in taxonomy, epidemiology and pathogenicity in humans. Advances in Parasitology. 64: 1-109 pdf

Chevillon C, Koffi BB, Barre N, Durand P, Arnathau C & de Meeûs T (2007) Direct and indirect inferences on parasite mating and gene transmission patterns Pangamy in the cattle tick Rhipicephalus (Boophilus) microplus. Infection, Genetics and Evolution. 7: 298-304 pdf

Choisy M, Guégan JF & Rohani P (2007) Mathematical Modeling of Infectious Diseases Dynamics. In Encyclopedia of infectious diseases: Modern methodologies (Ed. Tibayrenc M). John Wiley & Sons,Inc. pdf

Chomont N, Hocini H, Gresenguet G, Brochier C, Bouhlal H, Andreoletti L, Becquart P, Charpentier C, de Dieu Longo J, Si-Mohamed A, Kazatchkine MD & Belec L (2007) Early archives of genetically-restricted proviral DNA in the female genital tract after heterosexual transmission of HIV-1. AIDS. 21: 153-162 doi

de Meeûs T, McCoy KD, Prugnolle F, Chevillon C, Durand P, Hurtrez-Boussès S & Renaud F (2007) Population genetics and molecular epidemiology or how to 'debusquer la bete'. Infection, Genetics and Evolution. 7: 308-332 pdf

de Meeûs T, Prugnolle F & Agnew P (2007) Asexual reproduction: Genetics and evolutionary aspects. Cellular and Molecular Life Sciences. 64: 1355-1372 pdf

Elliott P, Walker LL, Little MP, Blair-West JR, Shade RE, Lee R, Rouquet P, Leroy E, Jeunemaitre X, Ardaillou R, Paillard F, Meneton P, Denton D (2007) Change in salt intake affects blood pressure of chimpanzees - implications for human populations. Circulation 116: 1563-1568 doi

Gauthier-Clerc M, Lebarbenchon C & Thomas F (2007) Recent expansion of highly pathogenic avian influenza H5N1: a critical review Ibis. 149: 202-214 pdf

Godreuil S, Renaud F, Van de Perre P, Carriere C, Torrea G & Bañuls AL (2007) Genetic diversity and population structure of Mycobacterium tuberculosis in HIV-1-infected compared with uninfected individuals in Burkina Faso. AIDS. 21: 248-250

Gonzalez JP, Pourrut X, Leroy E (2007) Ebolavirus and other filoviruses. In, Wildlife and Emerging Zoonotic Diseases: the Biology, Circumstances and Consequences of Cross-Species Transmission. Current Topics in Microbiology and Immunology, 315: 363-387

Guégan JF, Constantin de Magny G, Durand P & Renaud F (2007) Ecologie de la Santé: Le macroscope comme nouvel outil ! In Ecologie et évolution des systèmes parasites (Eds. Thomas F, Renaud F & Guégan JF). De Boeck Université, Paris, France. pdf

Guégan JF, Prugnolle F & Thomas F (2007) Global spatial patterns of infectious diseases and human evolution. In: Evolution in Health and Disease. Edited by Stearns SC, Koella J. Oxford, UK: Oxford University Press; p. 19-29 pdf

Lebarbenchon C, Chang C-M, van der Werf S, Aubin JT, Kayser Y, Ballesteros M, Renaud F, Thomas F & Gauthier-Clerc M (2007) Influenza A virus in birds during spring migration in the Camargue, France Journal of Wildlife Diseases. 43: 789-793 pdf

Lebarbenchon C, Poulin R & Thomas F (2007) Parasitisme, Biodiversité et Biologie de la Conservation. In: Ecologie et évolution des systèmes parasites (Eds. Thomas F, Renaud F & Guégan JF). De Boeck Université, Bruxelles: Belgium.

Lebarbenchon C, van der Werf S, Thomas F, Aubin J-T, Azebi S, Cuvelier F, Jeannin P, Roca V, Chang C-M, Kayser Y, Roche B, Guégan JF, Renaud F & Gauthier-Clerc M (2007) Absence of detection of highly pathogenic H5N1 in migratory waterfowl in southern France in 2005-2006. Infection, Genetics and Evolution. 7: 604-608 pdf

Lefèvre T, Sanchez MI, Ponton F, Hughes D & Thomas F (2007) Virulence and resistance in malaria: who drives the outcomes of infection Trends in Parasitology. 23: 299-302 pdf

Lefèvre T, Thomas F, Ravel S, Patrel D, Renault L, Le Bourligu L, Cuny G & Biron DG (2007) Trypanosoma brucei brucei induces alteration in the head proteome of the tsetse fly vector Glossina palpalis gambiensis. Insect Molecular Biology. 16: 651-660

Lefèvre T, Thomas F, Schwartz A, Levashina E, Blandin S, Brizard J-P, Le Bourligu L, Demettre E, Renaud F & Biron DG (2007) Malaria Plasmodium agent induces alteration in the head proteome of their Anopheles mosquito host. Proteomics. 7: 1908-1915 pdf

Linz B, Balloux F, Moodley Y, Manica A, Liu H, Roumagnac P, Falush D, Stamer C, Prugnolle F, van der Merwe SW, Yamaoka Y, Graham D Y, Perez-Trallero E, Wadstrom T, Suerbaum S & Achtman M (2007) An african origin for the intimate association between humans and Helicobacter pylori. Nature. 445: 915-918

Lucht A, Formenty P, Feldmann H, Gotz M, Leroy E, Bataboukila P, Grolla A, Feldmann F, Wittmann T, Campbell P, Atsangandoko C, Boumandoki P, Finke EJ, Miethe P, Becker S, Grunow R (2007) Development of an immunofiltration-based antigen-detection assay for rapid diagnosis of Ebola virus infection. Journal of Infectious Diseases 196: S184-S192 doi

Michalakis Y (2007) Parasitisme et évolution des traits d'histoire de vie. In Ecologie et évolution des systèmes parasites. (Eds. Thomas F, Guégan JF & Renaud F) de Boeck, Bruxelles pdf

Nettle D, Grace JB, Choisy M, Cornell HV, Guégan JF & Hochberg ME (2007) Cultural diversity, economic development and societal instability. PLoS One. 9: e929 pdf

Pourrut X, Delicat A, Rollin PE, Ksiazek TG, Gonzalez JP, Leroy EM (2007) Spatial and temporal patterns of Zaire Ebola virus antibody prevalence in the possible reservoir bat species. Journal of Infectious Diseases 196: S176-S183 doi

Rivero A, Agnew P, Bedhomme S, Sidobre C & Michalakis Y (2007) Resource depletion in Aedes aegypti mosquitoes infected by the microsporidia Vavraia culicis. Parasitology. 134: 1355-1362 pdf

Rouag-Ziane N, Boulahbal A, Gauthier-Clerc M, Thomas F & Chabi Y (2007) The inventory of coot (Fulica atra) ecroparasites in the north-west of Algeria. Parasite. 14: 253-256

Thomas F, Guégan JF & Renaud F (2007) Ecologie et évolution des systèmes parasites. De Boeck Université, Bruxelles: Belgium pdf

Thomas F, Moore J, Poulin R & Adamo S (2007) Parasites that manipulate their hosts. In Encyclopedia of infectious diseases: Modern methodologies. (Ed. M Tibayrenc). Wiley: USA

Van Heuverswyn F, Li Y, Bailes E, Neel C, Lafay B, Keele BF, Shaw KS, Takehisa J, Kraus MH, Loul S, Butel C, Liégeois F, Yangda B, Sharp PM, Mpoudi-Ngole E, Delaporte E, Hahn BH & Peeters M (2007) Genetic diversity and phylogeographic clustering of SIVcpzPtt in wild chimpanzees in Cameroon. Virology. 368: 155-171

Wittmann TJ, Biek R, Hassanin A, Rouquet P, Reed P, Yaba P, Pourrut X, Real LA, Gonzalez JP, Leroy EM (2007) Isolates of Zaire ebolavirus from wild apes reveal genetic lineage and recombinants. Proceedings of the National Academy of Sciences USA 104: 17123-17127 doi   [- correction -]


Becquart P, Foulongne V, Willumsen J, Rouzioux C, Segondy M & Van de Perre P (2006) Quantitation of HIV-1 RNA in breast milk by real time PCR. Journal of Virological Methods. 133: 109-111 doi

Becquart P, Petitjean G, Tabaa YA, Valea D, Huguet MF, Tuaillon E, Meda N, Vendrell JP & Van de Perre P (2006) Detection of a large T-cell reservoir able to replicate HIV-1 actively in breast milk. AIDS. 20: 1453-1455 doi

Biek R, Walsh PD, Leroy EM, Real L (2006) Recent common ancestry of Ebola Zaire virus found in a bat reservoir. PLoS Pathogens 2: 885-886 e90 doi

Biron DG, Brun C, Lefèvre T, Lebarbenchon C, Loxdale HD, Chevenet F, Brizard JP & Thomas F (2006) The pitfalls of proteomics experiments without the correct use of bioinformatics tools. Proteomics. 6: 5577-5596 pdf

Biron DG, Loxdale HD, Ponton F, Moura H, Brugidou C, Marche L & Thomas F (2006) Population proteomics: an emerging discipline to study metapopulation ecology Proteomics. 6: 1712-1715 pdf

Biron DG, Ponton F, Marche L, Galeotti N, Renault L, Demey-Thomas E, Poncet J, Brown SP, Jouin P, & Thomas F (2006) 'Suicide' of crickets harbouring hairworm: a proteomics investigation Insect Molecular Biology. 15: 731-742 pdf

Bogreau H, Renaud F, Bouchiba H, Durand P, Assi SB, Henry M C, Garnotel E, Pradines B, Fusai T, Wade B, Adehossi E, Parola P, Kamil MA, Puijalon O & Rogier C (2006) Genetic diversity and structure of African Plasmodium falciparum populations in urban and rural areas. American Journal of Tropical Medicine and Hygiene. 74: 953-959 pdf

Caillaud D, Prugnolle F, Durand P, Theron A & de Meeûs T (2006) Host sex and parasite genetic diversity. Microbes and Infection. 8: 2477-2483 pdf

Charpentier M, Setchell JM, Prugnolle F, Wickings EJ, Peignot P, Balloux F & Hossaert-McKey M (2006) Life history correlates of inbreeding depression in mandrills (Mandrillus sphinx). Molecular Ecology. 15: 21-28

Chevillon C, Paul RE, de Meeûs T & Renaud F (2006) Thinking transgenic vectors in a population context: Some expectations and many open-questions, In Genetically modified mosquitoes for malaria control, C. Boëte, Editor. Eurekah Bioscience: Texas, USA. pdf

Choisy M & Rohani P (2006) Harvesting can increase severity of wildlife disease epidemics. Proceedings of the Royal Society of London, Series B. 273: 2025-2034 pdf

Choisy M, Guégan JF & Rohani P (2006) Dynamics of infectious diseases and pulse vaccination: teasing apart the embedded resonance effects. Physica D. 223: 26-35 pdf

Davoust B, Bourry O, Gomez J, Lafay L, Casali F, Leroy E, Parzy D (2006) Surveys on seroprevalence of canine monocytic ehrlichiosis among dogs living in the Ivory Coast and Gabon and evaluation of a quick commercial test kit dot-ELISA. In, Century of Rickettsiology: Emerging, Reemerging Rickettsioses, Molecular Diagnostics, and Emerging Veterinary Rickettsioses. 1078: 464-469. NYAS Publications doi

Formenty P, Leroy EM, Epelboin A, Libama F, Lenzi M, Sudeck H, Yaba P, Allarangar Y, Boumandouki P, Nkounkou VB, Drosten C, Grolla A, Feldmann H, Roth C (2006) Detection of Ebola virus in oral fluid specimens during outbreaks of Ebola virus hemorrhagic fever in the Republic of Congo. Clinical Infectious Diseases 42: 1521-1526 doi

Jackson M, Watt AJ, Gautier P, Gilchrist D, Driehaus J, Graham GJ, Keebler J, Prugnolle F, Awadalla P & Forrester LM (2006) A murine specific expansion of the Rhox cluster involved in embryonic stem cell biology is under natural selection. BMC Genomics. 7: 212

Koffi BB, de Meeûs T, Barre N, Durand P, Arnathau C & Chevillon C (2006) Founder effects, inbreeding and effective sizes in the Southern cattle tick: the effect of transmission dynamics and implications for pest management. Molecular Ecology. 15: 4603-4611 pdf

Koffi BB, Risterucci AM, Joulia D, Durand P, Barre N, de Meeûs T & Chevillon C (2006) Characterization of polymorphic microsatellite loci within a young Boophilus microplus metapopulation. Molecular Ecology Notes. 6: 502-504 pdf

Lebarbenchon C, Poulin R, Gauthier-Clerc M & Thomas F (2006) Parasitological consequences of overcrowding in protected areas. Ecohealth. 3: 303-307 pdf

Leendertz FH, Lankester F, Guislain P, Neel C, Drori O, Dupain J, Speede S, Reed P, Wolfe N, Loul S, Mpoudi-Ngole E, Peeters M, Boesch C, Pauli G, Ellerbrok H, Leroy EM (2006) Anthrax in western and central African great apes. American Journal of Primatology 68: 928-933 doi

Lefèvre T, Koella JC, Renaud F, Hurd H, Biron DG & Thomas F (2006) New prospects for research on manipulation of insect vectors by pathogens PLoS Pathogens 2: 633-635 pdf

Leroy E, Pourrut X, Gonzalez JP (2006) Bats, reserves of the ebola virus : the mystery is dissipated. Médecine Sciences 22: 78-79 doi

Liu H, Prugnolle F, Manica A & Balloux F (2006) A geographically explicit genetic model of worldwide human-settlement history. American Journal of Human Genetics. 79: 230-237

Nebavi F, Ayala FJ, Renaud F, Bertout S, Eholie S, Moussa K, Mallie M & de Meeûs T (2006) Clonal population structure and genetic diversity of Candida albicans in AIDS patients from Abidjan (Cote d'Ivoire). Proceedings of the National Academy of Sciences USA. 103: 3663-3668 pdf

Ponton F, Biron DG, Moore J, Møller AP & Thomas F (2006) Facultative virulence as a strategy to manipulate hosts. Behavioural Processes. 72: 1-5 pdf

Ponton F, Lebarbenchon C, Lefèvre T, Biron DG, Duneau D, Hughes DP & Thomas F (2006) Parasite survives predation on its host. Nature. 440: 756 pdf

Ponton F, Lebarbenchon C, Lefèvre T, Thomas F, Duneau D, Marché L, Renault L, Hughes DP & Biron DG (2006) Hairworm anti-predator strategy: a study of causes and consequences. Parasitology. 133: 631-638 pdf

Ponton F, Lefèvre T, Lebarbenchon C, Thomas F, Loxdale HD, Marché L, Renault L, Perrot-Minnot MJ & Biron DG (2006) Do distantly parasites rely on the same proximate factors to alter the behaviour of their hosts? Proceedings of the Royal Society of London, Series B. 273: 2869-2877 pdf

Prugnolle F, de Meeûs T, Pointier JP, Durand P, Rognon A & Theron A (2006) Geographical variations in infectivity and susceptibility in the host-parasite system Schistosoma mansoni/Biomphalaria glabrata: no evidence for local adaptation Parasitology 133:313-319

Thomas F & de Meeûs T (2006) Population variability in the beetle Timarcha maritima (Coleoptera, Chrysomelidae). Acta Zoologica Sinica 52: 491-497 pdf

Vial L, Diatta G, Tall A, Ba EH, Bouganali H, Durand P, Sokhna C, Rogier C, Renaud F & Trape JF (2006) Incidence of tick-borne relapsing fever in west Africa: longitudinal study. Lancet. 368: 37-43 pdf

Vial L, Durand P, Arnathau C, Halos L, Diatta G, Trape JF & Renaud F (2006) Molecular divergences of the Ornithodoros sonrai soft tick species, a vector of human relapsing fever in West Africa. Microbes and Infection. 8: 2605-2611 pdf


Allela L, Bourry O, Pouillot R, Delicat A, Yaba P, Kumulungui B, Rouquet P, Gonzalez JP, Leroy EM (2005) Ebola virus antibody prevalence in dogs and human risk. Emerging Infectious Diseases 11: 385-390 doi

Bedhomme S, Agnew P, Sidobre C & Michalakis Y (2005) Pollution by conspecifics as a component of intraspecific competition among Aedes aegypti larvae. Ecological Entomology. 30: 1-7 pdf

Bedhomme S, Agnew P, Vital POY, Sidobre C & Michalakis Y (2005) Prevalence-dependent costs of parasite virulence. PLoS Biology. 3: e262 [- synopsis -] doi pdf

Biron DG, Agnew P, Marche L, Sidobre C & Michalakis Y (2005) Proteome of Aedes aegypti larvae in response to infection by the intracellular parasite Vavraia culicis. International Journal for Parasitology. 35: 1385-1397 pdf

Biron DG, Joly C, Marche L, Calcagno V, Schmidt-Rhaesa A, Renault L, Thomas F (2005) First analysis of the proteome of two nematomorph species, Paragordius tricuspidatus and Spinochordodes tellinii. Infection, Genetics and Evolution. 5: 167-175 pdf

Biron DG, Moura H, Marche L, Hughes AL, Thomas F (2005) Towards a new conceptual approach to 'parasitoproteomics'. Trends in Parasitology. 21:162-168 pdf

Biron DG, Ponton F, Joly J, Menigoz A, Hanelt B, Thomas F (2005) Water seeking behavior in insects harboring hairworms: should the host collaborate? Behavioral Ecology. 16:656-660 pdf

Boumandouki P, Formenty P, Epelboin A, Campbell P, Atsangandoko C, Allarangar Y, Leroy EM, Kone ML, Molamou A, Dinga-Longa O, Salemo A, Kounkou RY, Mombouli V, Ibara JR, Gaturuku P, Nkunku S, Lucht A, Feldmann H (2005) [Clinical management of patients and deceased during the Ebola outbreak from October to December 2003 in Republic of Congo]. Bulletin de la Société de Pathologie Exotique 98: 218-23

Broutin H, Guégan JF, Elguero E, Simondon F & Cazelles B (2005) Large-scale comparative analysis of pertussis population dynamics: periodicity, synchrony, and impact of vaccination. American Journal of Epidemiology. 161: 1159-1167 pdf

Chapuis MP, Loiseau A, Michalakis Y, Lecoq M & Estoup A (2005) Characterization and PCR multiplexing of polymorphic microsatellite loci for the locust Locusta migratoria. Molecular Ecology Notes. 5: 554-557

Charpentier M, Setchell JM, Prugnolle F, Knapp LA, Wickings EJ, Peignot P, Hossaert-McKey M (2005) Genetic diversity and reproductive success in mandrills (Mandrillus sphinx) Proceedings of the National Academy of Sciences USA. 102: 16723-16728

Froissart R, Roze D, Uzest M, Galibert L, Blanc S & Michalakis Y (2005) Recombination every day: Abundant recombination in a virus during a single multi-cellular host infectiton. PLoS Biology. 3: e89 [- synopsis -] pdf

Garamszegi LZ, Eens M, Hurtrez-Boussès S, Møller AP (2005) Testosterone, testes size, and mating success in birds: a comparative study. Hormones and Behavior. 47: 389-409 pdf

Gonzalez JP, Herbreteau V, Morvan J, Leroy EM (2005) Ebola virus circulation in africa: a balance between clinical expression and epidemiological silence. Bulletin de la Société de Pathologie Exotique 98: 210-7

Guégan JF, Morand S & Poulin R (2005) Are there general laws in parasite community ecology? The emergence of spatial parasitology and epidemiology. In Parasitism and ecosystems (Eds. Thomas F, Renaud F, Guégan JF). Oxford University Press, Oxford, UK pdf

Hanelt B, Thomas F, Schmidt-Rhaesa A (2005) Biology of the phylum Nematomorpha. Advances in Parasitology. 59: 243-305

Hurtrez-Boussès S, Pendino A, Barnabé C, Durand P, Rondelaud D, Durand C, Meunier C, Hurtrez JE & Renaud F (2005) Comparison between shell morphology and genetic diversity in two sympatric lymnaeid snails, vectors of fasciolosis. Canadian Journal of Zoology. 83: 1643-1648 pdf

Lambrechts L, Halbert J, Durand P, Gouagna LC, Koella JC (2005) Host genotype by parasite genotype interactions underlying the resistance of anopheline mosquitoes to Plasmodium falciparum. Malaria Journal. 4: 3 pdf

Møller AP, Garamszegi LZ, Gil D, Hurtrez-Boussès S, Eens M (2005) Correlated evolution of male and female testosterone profiles in birds and its consequences. Behavioral Ecology and Sociobiology. 58: 534-544 pdf

Malgoire JY, Bertout S, Renaud F, Bastide JM & Mallie A (2005) Typing of Saccharomyces cerevisiae clinical strains by using microsatellite sequence polymorphism. Journal of Clinical Microbiology. 43: 1133-1137

Manica A, Prugnolle F & Balloux F (2005) Geography is a better determinant of human genetic differentiation than ethnicity. Human Genetics. 118: 366-371

McCoy KD, Chapuis E, Tirard C, Boulinier T, Michalakis Y, Bohec CL, Maho YL & Gauthier-Clerc M (2005) Recurrent evolution of host-specialized races in a globally distributed parasite. Proceedings of the Royal Society of London, Series B. 272: 2389-95. pdf

Michalakis Y & Renaud F (2005) Malaria - fungal allies enlisted. Nature. 435: 891 pdf

Montville R, Froissart R, Remold SK, Tenaillon O & Turner PE (2005) Evolution of mutational robustness in an RNA virus PLoS Biology. 3: e381 [- synopsis -] pdf

Nkoghe D, Formenty P, Leroy EM, Nnegue S, Edou SYO, Ba JI, Allarangar Y, Cabore J, Bachy C, Andraghetti R, de Benoist AC, Galanis E, Rose A, Bausch D, Reynolds M, Rollin P, Choueibou C, Shongo R, Gergonne B, Kone LM, Yada A, Roth C, Mve MT (2005) [Multiple Ebola virus haemorrhagic fever outbreaks in Gabon, from October 2001 to April 2002]. Bulletin de la Société de Pathologie Exotique 98: 224-9

Nkoghe D, Nnegue S, Mve MT, Formenty P, Thompson G, Iba Ba J, Okome Nkoumou M, Leroy E (2005) [Isolated case of haemorrhagic fever observed in Gabon during the 2002 outbreak of Ebola but distant from epidemic zones]. Médecine Tropicale 65: 349-54

Plisson C, Uzest M, Drucker M, Froissart R, Dumas C, Conway J, Thomas D, Blanc S & Bron P (2005) Structure of the mature P3-virus particle complex of cauliflower mosaic virus revealed by cryo-electron microscopy Journal of Molecular Biology. 346: 267-277 pdf

Ponton F, Biron DG, Joly C, Duneau D, Thomas F (2005) Ecology of populations parasitically modified: a case study from a gammarid (Gammarus insensibilis) - trematode (Microphallus papillorobustus) system. Marine Ecology Progress Series. 299: 205-215 pdf

Pourrut X, Kumulungui B, Wittmann T, Moussavou G, Delicat A, Yaba P, Nkoghe D, Gonzalez JP, Leroy EM (2005) The natural history of Ebola virus in Africa. Microbes and Infection 7: 1005-1014 doi

Prugnolle F, Liu H, de Meeûs T & Balloux F (2005) Population genetics of complex life-cycle parasites: an illustration with trematodes. International Journal for Parasitology. 35: 255-263 pdf

Prugnolle F, Manica A & Balloux F (2005) Geography predicts neutral genetic diversity of human populations. Current Biology. 15: R159-R160

Prugnolle F, Manica A, Charpentier M, Guégan JF, Guernier V & Balloux F (2005) Pathogen-driven selection and worldwide HLA class I diversity. Current Biology. 15: 1022-1027 [-supplimental data-] pdf

Prugnolle F, Roze D, Theron A & de Meeûs T (2005) F-statistics under alternation of sexual and asexual reproduction: a model and data from schistosomes (platyhelminth parasites). Molecular Ecology. 14: 1355-65. pdf

Prugnolle F, Theron A, Pointier JP, Jabbour-Zahab R, Jarne P, Durand P & de Meeûs T (2005) Dispersal in a parasitic worm and its two hosts: consequence for local adaptation. Evolution 59: 296-303 pdf

Razakandrainibe FG, Durand P, Koella JC, de Meeûs T, Rousset F, Ayala FJ & Renaud F (2005) "Clonal" population structure of the malaria agent Plasmodium falciparum in high-infection regions. Proceedings of the National Academy of Sciences USA. 102: 17388-17393 pdf

Renaud F, de Meeûs T & Read A (2005) Parasitism in man-made environments pg 155-170. In Parasitism and ecosystems (Eds Thomas F, Renaud F & Guégan JF) Oxford University Press.

Rouquet P, Froment JM, Bermejo M, Kilbourn A, Karesh W, Reed P, Kumulungui B, Yaba P, Delicat A, Rollin PE, Leroy EM (2005) Wild animal mortality monitoring and human Ebola outbreaks, Gabon and Republic of Congo, 2001-2003. Emerging Infectious Diseases 11: 283-290 doi

Roze D, Rousset F & Michalakis Y (2005) Germline bottlenecks, biparental inheritance and selection on mitochondrial variants: a two-level selection model. Genetics. 170: 1385-1399 pdf

Schmidt-Rhaesa A, Biron DG, Joly C & Thomas F (2005) Host-parasite relations and seasonal occurrence of Paragordius tricuspidatus and Spinochordodes tellinii (Nematomorpha) in Southern France. Zoologischer Anzeiger. 244: 51-57

Thomas F, Adamo S & Moore J (2005) Parasitic manipulation : where are we and where should we go? Behavioural Processes. 68: 185-199 pdf

Thomas F, Renaud F & Guégan JF (Eds) (2005) Parasitism and ecosystems. Oxford University Press. Oxford, UK

Towner JS, Pourrut X, Albarino CG, Nkogue CN, Bird BH, Grard G, Ksiazek TG, Gonzalez JP, Nichol ST, Leroy EM (2007) Marburg virus infection detected in a common African bat. PLoS One 2: e764 doi