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Biodiversité des Systèmes Infectieux : du Gène à l'Ecosystème

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Publications 'MiVEGEC' par membres de l'équipe depuis 2005 :

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Aberkane S, Pradel B, Dumont Y, Veloo ACM, Laurens C, Bonzon L, Godreuil S, Marchandin H, Jean-Pierre H (2018) Clinical sources and antimicrobial susceptibility of Prevotella timonensis at the university hospital of Montpellier, France. Anaerobe 50: 19-21 doi

Alda P, Lounnas M, Vazquez AA, Ayaqui R, Calvopina M, Celi-Erazo M, Dillon RT, Jarne P, Loker ES, Pareja FCM, Muzzio-Aroca J, Narvaez AO, Noya O, Robles LM, Rodriguez-Hidalgo R, Uribe N, David P, Pointier JP, Hurtrez-Boussès S (2018) A new multiplex PCR assay to distinguish among three cryptic Galba species, intermediate hosts of Fasciola hepatica. Veterinary Parasitology 251: 101-105 doi

Bañuls AL, Nguyen TVA, Nguyen QH, Nguyen TNA, Tran HH, Godreuil S (2018) Antimicrobial resistance: the 70-year arms race between humans and bacteria. In, Ecology and Evolution of Infectious Diseases in low-income countries: Pathogen Control and Public Health Management in Low-Income Countries. Roche B, Broutin H & Simard F (Eds.) Oxford University Press, New York. pp 77-90

Baranovsky S, Romano-Bertrand S, Dumont Y, Masnou A, Hammer F, Godreuil S, Parer S, Jumas-Bilak E (2018) Tracking carbapenemase-producing bacteria by molecular typing: population diversity and sampling pitfall. Infection, Genetics and Evolution 65: 104-106 doi

Benavides JA, Shiva C, Virhuez M, Tello C, Appelgren A, Vendrell J, Solassol J, Godreuil S, Streicker DG (2018) Extended-spectrum beta-lactamase-producing Escherichia coli in common vampire bats Desmodus rotundus and livestock in Peru. Zoonoses and Public Health 65: 454-458 doi

Berry V, Chevenet F, Doyon JP, Jousselin E (2018) A geography-aware reconciliation method to investigate diversification patterns in host/parasite interactions. Molecular Ecology Resources 18: 1173-1184 doi

Bouam A, Levasseur A, Bonnet M, Borand L, Van Goethem C, Drancourt M, Godreuil S (2018) Complete genome sequence of Mycobacterium sp. strain 3519a. Microbiology Resource Announcements 6: UNSP e01565-17 doi

Bouam A, Levasseur A, Bonnet M, Borand L, Van Goethem C, Drancourt M, Godreuil S (2018) Complete genome sequence of Mycobacterium sp. strain 4858. Microbiology Resource Announcements 6: UNSP e01604-17 doi

Caimmi D, Martocq N, Trioleyre D, Guinet C, Godreuil S, Daniel T, Chiron R (2018) Positive effect of liposomal amikacin for inhalation on Mycobacterium abcessus in cystic fibrosis patients. Open Forum Infectious Diseases 5: UNSP ofy034 doi

Cassan C, Diagne CA, Tatard C, Gauthier P, Dalecky A, Ba K, Kane M, Niang Y, Diallo M, Sow A, Brouat C, Bañuls AL (2018) Leishmania major and Trypanosoma lewisi infection in invasive and native rodents in Senegal. PLoS Neglected Tropical Diseases 12: e0006615 doi

Duchemin W, Gence G, Chifolleau AMA, Arvestad L, Bansal MS, Berry V, Boussau B, Chevenet F, Comte N, Davin AA, Dessimoz C, Dylus D, Hasic D, Mallo D, Planel R, Posada D, Scornavacca C, Szollosi G, Zhang LX, Tannier E, Daubin V (2018) RecPhyloXML: a format for reconciled gene trees. Bioinformatics 34: 3646-3652 doi

Dumont Y, Lounnas M, Carrière C, Solassol J, Bañuls A.-L, Godreuil S (2018) La tuberculose bovine : une maladie globalisée à l’interface homme-animal. Revue Francophone des Laboratoires 503: 28-33 doi

Godreuil S, Marcy O, Wobudeya E, Bonnet M, Solassol J (2018) Tackling mortality due to childhood tuberculosis. Lancet Public Health 3: E165-E165 doi

Jaber HT, Hailu A, Pratlong F, Lami P, Bastien P, Jaffe CL (2018) Analysis of genetic polymorphisms and tropism in east African Leishmania donovani by amplified fragment length polymorphism and kDNA minicircle sequencing. Infection, Genetics and Evolution 65: 80-90 doi

Kabore OD, Loukil A, Godreuil S, Drancourt M (2018) Co-culture models illustrate the digestion of Gemmata spp. by phagocytes. Scientific Reports 8: 13311 doi

Kocher A, Valiere S, Bañuls AL, Murienne J (2018) High-throughput sequencing of kDNA amplicons for the analysis of Leishmania minicircles and identification of Neotropical species. Parasitology 145: 585-594 doi

Kolia-Diafouka P, Godreuil S, Bourdin A, Carrere-Kremer S, Kremer L, Van de Perre P, Tuaillon E (2018) Optimized lysis-extraction method combined with IS6110-amplification for detection of Mycobacterium tuberculosis in paucibacillary sputum specimens. Frontiers in Microbiology 9: 2224 doi

Laurens C, Jean-Pierre H, Licznar-Fajardo P, Hantova S, Godreuil S, Martinez O, Jumas-Bilak E (2018) Transmission of IMI-2 carbapenemase-producing Enterobacteriaceae from river water to human. Journal of Global Antimicrobial Resistance 15: 88-92 doi

Lounnas M, Correa AC, Alda P, David P, Dubois MP, Calvopina M, Caron Y, Celi-Erazo M, Dung BT, Jarne P, Loker ES, Noya O, Rodriguez-Hidalgo R, Toty C, Uribe N, Pointier JP, Hurtrez-Boussès S (2018) Population structure and genetic diversity in the invasive freshwater snail Galba schirazensis (Lymnaeidae). Canadian Journal of Zoology 96: 425-435 doi

Meyer A, Dinh TX, Han TA, Do DV, Nhu TV, Pham LT, Nguyen TTT, Newman S, Hasler B, Pfeiffer DU, Vergne T (2018) Trade patterns facilitating highly pathogenic avian influenza virus dissemination in the free-grazing layer duck system in Vietnam. Transboundary and Emerging Diseases 65: 408-419 doi

Moore S, Dongdem AZ, Opare D, Cottavoz P, Fookes M, Sadji AY, Dzotsi E, Dogbe M, Jeddi F, Bidjada B, Piarroux M, Valentin OT, Glele CK, Rebaudet S, Sow AG, Constantin de Magny G, Koivogui L, Dunoyer J, Bellet F, Garnotel E, Thomson N, Piarroux R (2018) Dynamics of cholera epidemics from Benin to Mauritania. PLoS Neglected Tropical Diseases 12: e0006379 doi

Nguyen QH, Contamin L, Nguyen TVA, Bañuls AL (2018) Insights into the processes that drive the evolution of drug resistance in Mycobacterium tuberculosis. Evolutionary Applications 11: 1498-1511 doi

Nguyen TVA, Anthony RM, Bañuls AL, Vu DH, Alffenaar JWC (2018) Bedaquiline resistance: its emergence, mechanism, and prevention. Clinical Infectious Diseases 66: 1625-1630 doi

Roche B, Broutin H & Simard F (2018) Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. Oxford University Press, New York. Pp. 322

Roche B, Broutin H & Simard F (2018) Optimizing public health strategies in low-income countries: The challenge to apply the scientific knowledge and for which disease? In, Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. Roche B, Broutin H & Simard F (Eds.) Oxford University Press, New York. pp 309-320

Sanhueza D, Chevillon C, Bouzinbi N, Godreuil S, Guégan JF (2018) Chitin increases Mycobacterium ulcerans growth in acidic environments. Microbes and Environments 33: 234-237 doi

Tine RC, Ndiaye LA, Niang MN, Kiori DE, Dia N, Gaye O, Broutin H (2018) Upper respiratory infections in a rural area with reduced malaria transmission in Senegal: a pathogens community study. BMC Infectious Diseases 18: 459 doi

Viboud C, Broutin H & Chowell G (2018) Spatial-temporal transmission dynamics and control of infectious diseases: Ebola virus disease (EVD) as a case study. In, Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. Roche B, Broutin H & Simard F (Eds.) Oxford University Press, New York.

Vu SN, Tran HS, Tran VP, Tran CT, Tran ND, Nguyen TY, Nguyen VC, Ninh VC, Ngo KP, Rahola N, Bañuls AL (2017) Initial results on distribution and species composition of sand flies, vectors transmitting Leishmania, Quang Ninh 2016. Vietnam Journal of Preventive Medicine 27: 171-176


Aberkane S, Compain F, Decre D, Pantel A, Vittecoq M, Solassol J, Bouzinbi N, Jean-Pierre H, Godreuil S (2017) Persistence of blaCMY-2-producing Proteus mirabilis in two gull colonies at a 1-year interval in southern France. Journal of Global Antimicrobial Resistance 9: 138-140 doi

Aberkane S, Didelot MN, Carriere C, Laurens C, Sanou S, Godreuil S, Jean-Pierre H (2017) Weissella confusa bacteremia: an underestimated opportunistic pathogen. Medecine Et Maladies Infectieuses 47: 297-299 doi

Agier L, Martiny N, Thiongane O, Mueller JE, Paireau J, Watkins ER, Irving TJ, Koutangni T, Broutin H (2017) Towards understanding the epidemiology of Neisseria meningitidis in the African meningitis belt: a multi-disciplinary overview. International Journal of Infectious Diseases 54: 103-112 doi

Akhoundi M, Downing T, Votypka J, Kuhls K, Lukes J, Cannet A, Ravel C, Marty P, Delaunay P, Kasbari M, Granouillac B, Gradoni L, Sereno D (2017) Leishmania infections: molecular targets and diagnosis. Molecular Aspects of Medicine 57: 1-29 doi

Appelgren A, Morquin D, Dufour S, Le Moing V, Reynes J, Lotthe A, Parer S, Corbeau C, Aubry A, Sougakoff W, Solassol J, Bonzon L, Dumont Y, Godreuil S (2017) Investigation of pre-XDR beijing Mycobacterium tuberculosis transmission to a healthcare worker in France, 2016. Journal of Hospital Infection 97: 414-417 doi

Ayhan N, Baklouti A, Prudhomme J, Walder G, Amaro F, Alten B, Moutailler S, Ergunay K, Charrel RN, Huemer H (2017) Practical guidelines for studies on sandfly-borne phleboviruses: Part I: important points to consider ante field work. Vector-Borne and Zoonotic Diseases 17: 73-80 doi

Bañuls AL, Panteix G, Godreuil S (2017) Les mycobactéries tuberculeuses. In, Actualités Permanentes en Microbiologie Clinique. Ed. Freney J. Eska. Series Actinomycètes et Mycobactèries VI:3. Eska

Benallal KE, Benikhlef R, Garni R, Gassen B, Dedet JP, Harrat Z (2017) Presence of Phlebotomus perniciosus atypical form in Algeria. Journal of Arthropod-Borne Diseases 11: 139-146

Bonnet M, San KC, Pho Y, Sok C, Dousset JP, Brant W, Hurtado N, Eam KK, Ardizzoni E, Heng SH, Godreuil S, Yew WW, Hewison C (2017) Nontuberculous mycobacteria infections at a provincial reference hospital, Cambodia. Emerging Infectious Diseases 23: 1139-1147 doi

Caron Y, Celi-Erazo M, Hurtrez-Boussès S, Lounnas M, Pointier JP, Saegerman C, Losson B, Benitez-Ortiz W (2017) Is Galba schirazensis (Mollusca, Gastropoda) an intermediate host of Fasciola hepatica (Trematoda, Digenea) in Ecuador?. Parasite 24: 24 doi

Harrabi M, Ghawar W, Hide M, Bettaieb J, Yazidi R, Jaouadi K, Sana C, Chalgha B, Toumi A, Zaâtour A, Raouène M, Bañuls A.L, Ben Salah (2017) No evidence of interspecific genetic exchange by multi-locus microsatellite typing between Leishmania killicki and Leishmania major in a mixed focus of cutaneous leishmaniasis in South-East Tunisia. Journal of Infectious Diseases & Preventive Medicine 5: 1-7 doi

Huemer H, Prudhomme J, Amaro F, Baklouti A, Walder G, Alten B, Moutailler S, Ergunay K, Charrel RN, Ayhan N (2017) Practical guidelines for studies on sandfly-borne phleboviruses: Part II: important points to consider for fieldwork and subsequent virological screening. Vector-Borne and Zoonotic Diseases 17: 81-90 doi

Huy NQ, Lucie C, Hoa TTT, Hung NV, Lan NTN, Son NT, Nhung NV, Anh DD, Bañuls A.L, Anh NTV (2017) Molecular analysis of pyrazinamide resistance in Mycobacterium tuberculosis in Vietnam highlights the high rate of pyrazinamide resistance-associated mutations in clinical isolates. Emerging Microbes & Infections 6: e86 doi

Kocher A, de Thoisy B, Catzeflis F, Huguin M, Valiere S, Zinger L, Bañuls AL, Murienne J (2017) Evaluation of short mitochondrial metabarcodes for the identification of Amazonian mammals. Methods in Ecology and Evolution 8: 1276-1283 doi

Kocher A, de Thoisy B, Catzeflis F, Valiere S, Bañuls AL, Murienne J (2017) iDNA screening: disease vectors as vertebrate samplers. Molecular Ecology 26: 6478-6486 doi

Kocher A, Gantier JC, Gaborit P, Zinger L, Holota H, Valiere S, Dusfour I, Girod R, Bañuls AL, Murienne J (2017) Vector soup: high-throughput identification of Neotropical phlebotomine sand flies using metabarcoding. Molecular Ecology Resources 17: 172-182 doi

Lachaud L, Fernandez-Arevalo A, Normand AC, Lami P, Nabet C, Donnadieu JL, Piarroux M, Djenad F, Cassagne C, Ravel C, Tebar S, Llovet T, Blanchet D, Demar M, Harrat Z, Aoun K, Bastien P, Munoz C, Gallego M, Piarroux R (2017) Identification of Leishmania by matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry using a free web-based application and a dedicated mass-spectral library. Journal of Clinical Microbiology 55: 2924-2933 doi

Lehrter V, Bañuls AL, Leger N, Rioux JA, Depaquit J (2017) Phlebotomus (paraphlebotomus) chabaudi and Phlebotomus riouxi: closely related species or synonyms? Parasite 24: 47 doi

Lounnas M, Correa AC, Vázquez AA, Dia A, Escobar JS, Nicot A, Arenas J, Ayaqui R, Dubois MP, Gimenez T, Gutiérrez A, González-Ramírez C, Noya O, Prepelitchi L, Uribe N, Wisnivesky-Colli C, Yong M, David P, Loker ES, Jarne P, Pointier JP, Hurtrez-Boussès S (2017) Self-fertilization, long-distance flash invasion and biogeography shape the population structure of Pseudosuccinea columella at the worldwide scale. Molecular Ecology 26: 887-903 doi

Lounnas M, Vázquez AA, Alda P, Sartori K, Pointier JP, David P, Hurtrez-Boussès S (2017) Isolation, characterization and population-genetic analysis of microsatellite loci in the freshwater snail Galba cubensis (Lymnaeidae). Journal of Molluscan Studies 83: 63-68 doi

Meyer A, Dinh TX, Nhu TV, Pham LT, Newman S, Nguyen TTT, Pfeiffer DU, Vergne T (2017) Movement and contact patterns of long-distance free-grazing ducks and avian influenza persistence in Vietnam. PLoS One 12: e0178241 doi

Nguyen HQ, Nguyen NV, Contamin L, Tran THT, Vu TT, Nguyen HV, Nguyen NLT, Nguyen ST, Dang AD, Bañuls AL, Nguyen VAT (2017) Quadruple-first line drug resistance in Mycobacterium tuberculosis in Vietnam: what can we learn from genes?. Infection, Genetics and Evolution 50: 55-61 doi

Ouedraogo AS, Pierre HJ, Bañuls AL, Ouedraogo R, Godreuil S (2017) Emergence and spread of antibiotic resistance in West Africa: contributing factors and threat assessment. Médecine Et Santé Tropicales 27: 147-154 doi

Ouedraogo AS, Sanou S, Kissou A, Poda A, Aberkane S, Bouzinbi N, Nacro B, Ouedraogo R, Van De Perre P, Carriere C, Decre D, Jean-Pierre H, Godreuil S (2017) Fecal carriage of Enterobacteriaceae producing extended-spectrum beta-lactamases in hospitalized patients and healthy community volunteers in Burkina Faso. Microbial Drug Resistance 23: 63-70 doi

Panteix G, Bañuls AL, Godreuil S (2017) Les mycobactéries non tuberculeuses. In, Actualités Permanentes en Microbiologie Clinique. Ed. Freney J. Eska. Series Actinomycètes et Mycobactèries VI:4. Eska

Pigott DM, Golding N, Messina JP, Battle KE, Duda KA, Balard Y, Bastien P, Pratlong F, Brownstein JS, Freifeld CC, Mekaru SR, Madoff LC, George DB, Myers MF, Hay SI (2014) Global database of leishmaniasis occurrence locations, 1960-2012. Scientific Data 1: 140036 doi

Rougeron V, De Meeûs T, Bañuls AL (2017) Reproduction in Leishmania: a focus on genetic exchange. Infection, Genetics and Evolution 50: 128-132 doi

Sambe-Ba B, Diallo MH, Seck A, Wane AA, Constantin de Magny G, Boye CSB, Sow AI, Gassama-Sow (2017) Identification of atypical El Tor V. cholerae O1 Ogawa hosting SXT element in Senegal, Africa. Frontiers in Microbiology 8: 748 doi

Sangaré I, Djibougou Djibougou A, Koudraogo Yaméogo B, Drabo F, Diabaté A, Bañuls AL, Fournet F, Price H, Tinga Guiguemdé R, Kounbobr Dabiré R (2017) First detection of Leishmania infantum in domestic dogs from Burkina Faso (West Africa). Research Journal of Parasitology 12: 27-32

Van der Auwera G, Bart A, Chicharro C, Cortes S, Davidsson L, Di Muccio T, Dujardin J, Felger I, Paglia MG, Grimm F, Harms G, Jaffe CL, Manser M, Ravel C, Robert-Gangneux F, Roelfsema J, Toz S, Verweij JJ, Chiodini PL (2016) Comparison of Leishmania typing results obtained from 16 european clinical laboratories in 2014. Eurosurveillance 21: 9-19 doi

Vittecoq M, Laurens C, Brazier L, Durand P, Elguero E, Arnal A, Thomas F, Aberkane S, Renaud N, Prugnolle F, Solassol J, Jean-Pierre H, Godreuil S, Renaud F (2017) VIM-1 carbapenemase-producing Escherichia coli in gulls from southern France. Ecology and Evolution 7: 1224-1232 doi


Aberkane S, Compain F, Decre D, Dupont C, Laurens C, Vittecoq M, Pantel A, Solassol J, Carriere C, Renaud F, Brieu N, Lavigne JP, Bouzinbi N, Ouedraogo AS, Jean-Pierre H, Godreuil S (2016) High prevalence of SXT/R391-related integrative and conjugative elements carrying bla(CMY-2) in Proteus mirabilis isolates from gulls in the South of France. Antimicrobial Agents and Chemotherapy 60: 1148-1152 doi

Alten B, Maia C, Afonso MO, Campino L, Jimenez M, Gonzalez E, Molina R, Bañuls AL, Prudhomme J, Vergnes B, Toty C, Cassan C, Rahola N, Thierry M, Sereno D, Bongiorno G, Bianchi R, Khoury C, Tsirigotakis N, Dokianakis E, Antoniou M, Christodoulou V, Mazeris A, Karakus M, Ozbel Y, Arserim SK, Kasap OE, Gunay F, Oguz G, Kaynas S, Tsertsvadze N, Tskhvaradze L, Giorgobiani E, Gramiccia M, Volf P, Gradoni L (2016) Seasonal dynamics of phlebotomine sand fly species proven vectors of Mediterranean leishmaniasis caused by Leishmania infantum. PLoS Neglected Tropical Diseases 10: e0004458 doi

Bourreau E, Ginouves M, Prevot G, Hartley MA, Gangneux JP, Robert-Gangneux F, Dufour J, Sainte-Marie D, Bertolotti A, Pratlong F, Martin R, Schutz F, Couppie P, Fasel N, Ronet C (2016) Presence of Leishmania RNA virus 1 in Leishmania guyanensis increases the risk of first-line treatment failure and symptomatic relapse. Journal of Infectious Diseases 213: 105-111 doi

Cassan C, Dione MM, Dereure J, Diedhiou S, Bucheton B, Hide M, Kako C, Gaye O, Senghor M, Niang AA, Bañuls AL, Faye B (2016) First insights into the genetic diversity and origin of Leishmania infantum in Mont Rolland (Thiès region, Senegal). Microbes and Infection 18: 412-420 doi

Chazel M, Marchandin H, Keck N, Terru D, Carriere C, Ponsoda M, Jacomo V, Panteix G, Bouzinbi N, Bañuls AL, Choisy M, Solassol J, Aubry A, Godreuil S (2016) Evaluation of the SLOMYCO sensititre (R) panel for testing the antimicrobial susceptibility of Mycobacterium marinum isolates. Annals of Clinical Microbiology and Antimicrobials 15: 30 doi

Chevenet F, Doyon JP, Scornavacca C, Jacox E, Jousselin E, Berry V (2016) SylvX: a viewer for phylogenetic tree reconciliations. Bioinformatics 32: 608-613 doi

Daval N, Marchal C, Guillaumot L, Hue T, Ravel C, Keck N, Kasbari M (2016) First report of autochthonous non-vectorial canine leishmaniasis in New Caledonia, south-western Pacific: implications for new control measures and recommendations on importation of dogs. Parasites & Vectors 9: 108 doi

Dedet JP (2016) Abrégé illustré d'histoire de la médecine. pp128. Éditions DOCIS

Dupont C, Terru D, Aguilhon S, Frapier JM, Paquis MP, Morquin D, Lamy B, Godreuil S, Parer S, Lotthe A, Jumas-Bilak E, Romano-Bertrand S (2016) Source-case investigation of Mycobacterium wolinskyi cardiac surgical site infection. Journal of Hospital Infection 93: 235-239 doi

Finger F, Genolet T, Mari L, Constantin de Magny G, Manga NM, Rinaldo A, Bertuzzo E (2016) Mobile phone data highlights the role of mass gatherings in the spreading of cholera outbreaks. Proceedings of the National Academy of Sciences USA 113: 6421-6426 doi

Kocher A, Gantier JC, Holota H, Jeziorski C, Coissac E, Bañuls AL, Girod R, Gaborit P, Murienne J (2016) Complete mitochondrial genome of Lutzomyia (Nyssomyia) umbratilis (Diptera: Psychodidae), the main vector of Leishmania guyanensis. Mitochondrial DNA Part A 27: 4219-4221 doi

Loeuillet C, Bañuls AL, Hide M (2016) Study of Leishmania pathogenesis in mice: experimental considerations. Parasites & Vectors 9: 144 doi

Marcy O, Ung V, Goyet S, Borand L, Msellati P, Tejiokem M, Thi NLN, Nacro B, Cheng S, Eyangoh S, Pham TH, Ouedraogo AS, Tarantola A, Godreuil S, Blanche S, Delacourt C, Grp Paanther Study (2016) Performance of Xpert MTB/RIF and alternative specimen collection methods for the diagnosis of tuberculosis in HIV-infected children. Clinical Infectious Diseases 62: 1161-1168 doi

Mesquita I, Varela P, Belinha A, Gaifem J, Laforge M, Vergnes B, Estaquier J, Silvestre R (2016) Exploring NAD(+) metabolism in host-pathogen interactions. Cellular and Molecular Life Sciences 73: 1225-1236 doi

Nath-Chowdhury M, Sangaralingam M, Bastien P, Ravel C, Pratlong F, Mendez J, Libman M, Ndao M (2016) Real-time PCR using FRET technology for old world cutaneous leishmaniasis species differentiation. Parasites & Vectors 9: 255 doi

Nguyen VAT, Bañuls AL, Tran THT, Pham KLT, Nguyen TS, Nguyen HV, Nguyen NLT, Dang DA, Marks GB, Choisy M (2016) Mycobacterium tuberculosis lineages and anti-tuberculosis drug resistance in reference hospitals across Viet Nam. BMC Microbiology 16: 167 doi

Ouedraogo AS, Compain F, Sanou M, Aberkane S, Bouzinbi N, Hide M, Sangare L, Ouedraogo-Traore R, Jean-Pierre H, Vendrell J, Solassol J, Decre D, Godreuil S (2016) First description of IncX3 plasmids carrying bla(oxa-181) in Escherichia coli clinical isolates in Burkina Faso. Antimicrobial Agents and Chemotherapy 60: 3240-3242 doi

Ouedraogo AS, Dunyach-Remy C, Kissou A, Sanou S, Poda A, Kyelem CG, Solassol J, Bañuls AL, Van de Perre P, Ouedraogo R, Jean-Pierre H, Lavigne JP, Godreuil S (2016) High nasal carriage rate of Staphylococcus aureus containing Panton-Valentine leukocidin- and EDIN-encoding genes in community and hospital settings in Burkina Faso. Frontiers in Microbiology 7: 1406 doi

Ouedraogo AS, Sanou M, Kissou A, Sanou S, Solare H, Kabore F, Poda A, Aberkane S, Bouzinbi N, Sano I, Nacro B, Sangare L, Carriere C, Decre D, Ouegraogo R, Jean-Pierre H, Godreuil S (2016) High prevalence of extended-spectrum beta-lactamase producing Enterobacteriaceae among clinical isolates in Burkina Faso. BMC Infectious Diseases 16: 326 doi

Ozbilgin A, Culha G, Uzun S, Harman M, Topal SG, Okudan F, Zeyrek F, Gunduz C, Ostan I, Karakus M, Toz S, Kurt O, Akyar I, Erat A, Gungor D, Kayabasi C, Cavus I, Bastien P, Pratlong F, Kocagoz T, Ozbel Y (2016) Leishmaniasis in Turkey: first clinical isolation of Leishmania major from 18 autochthonous cases of cutaneous leishmaniasis in four geographical regions. Tropical Medicine & International Health 21: 783-791 doi

Paireau J, Chen A, Broutin H, Grenfell B, Basta NE (2016) Seasonal dynamics of bacterial meningitis: a time-series analysis. Lancet Global Health 4: E370-E377 doi

Pomares C, Marty P, Bañuls AL, Lemichez E, Pratlong F, Faucher B, Jeddi F, Moore S, Michel G, Aluru S, Piarroux R, Hide M (2016) Genetic diversity and population structure of Leishmania infantum from southeastern France: evaluation using multi-locus microsatellite typing. PLoS Neglected Tropical Diseases 10: e0004303 doi

Pratlong F, Balard Y, Lami P, Talignani L, Ravel C, Dereure J, Lefebvre M, Serres G, Bastien P, Dedet JP (2016) The Montpellier Leishmania collection, from a laboratory collection to a biological resource center: a 39-year-long story. Biopreservation and Biobanking 14: 470-479 doi

Prudhomme J, Cassan C, Hide M, Toty C, Rahola N, Vergnes B, Dujardin JP, Alten B, Sereno D, Bañuls AL (2016) Ecology and morphological variations in wings of Phlebotomus ariasi (Diptera: Psychodidae) in the region of Roquedur (Gard, France): a geometric morphometrics approach. Parasites & Vectors 9: 578 doi

Senghor MW, Niang AA, Depaquit J, Ferte H, Faye MN, Elguero E, Gaye O, Alten B, Perktas U, Cassan C, Faye B, Bañuls AL (2016) Transmission of Leishmania infantum in the canine leishmaniasis focus of Mont-Rolland, Senegal: ecological, parasitological and molecular evidence for a possible role of Sergentomyia sand flies. PLoS Neglected Tropical Diseases 10: e0004940 doi

Stanojcic S, Sollelis L, Kuk N, Crobu L, Balard Y, Schwob E, Bastien P, Pagès M, Sterkers Y (2016) Single-molecule analysis of DNA replication reveals novel features in the divergent eukaryotes Leishmania and Trypanosoma brucei versus mammalian cells. Scientific Reports 6: 23142 doi

Vázquez AA, Lounnas M, Sánchez J, Alba A, Milesi A, Hurtrez-Boussès S (2016) Genetic and infective diversity of the liver fluke Fasciola hepatica (Trematoda: Digenea) from Cuba. Journal of Helminthology 90: 719-725 doi

Vergnes B, Gazanion E, Grentzinger T (2016) Functional divergence of SIR2 orthologs between trypanosomatid parasites. Molecular and Biochemical Parasitology 207: 96-101 doi

Vittecoq M, Godreuil S, Prugnolle F, Durand P, Brazier L, Renaud N, Arnal A, Aberkane S, Jean-Pierre H, Gauthier-Clerc M, Thomas F, Renaud F (2016) Antimicrobial resistance in wildlife. Journal of Applied Ecology 53: 519-529 doi

Vu BNT, Jafari AJ, Aardema M, Tran HKT, Nguyen DNT, Dao TT, Nguyen TV, Tran TK, Nguyen CKT, Fox A, Bañuls AL, Thwaites G, Nguyen KV, Wertheirn HFL (2016) Population structure of colonizing and invasive Staphylococcus aureus strains in northern Vietnam. Journal of Medical Microbiology 65: 298-305 doi


Aberkane S, Compain F, Barraud O, Ouedraogo AS, Bouzinbi N, Vittecoq M, Jean-Pierre H, Decre D, Godreuil S (2015) Non-01/Non-0139 Vibrio cholerae avian isolate from France cocarrying the bla(VIM-1) and bla(VIM-4) genes. Antimicrobial Agents and Chemotherapy 59: 6594-6596 doi

Alten B, Ozbel Y, Ergunay K, Kasap OE, Cull B, Antoniou M, Velo E, Prudhomme J, Molina R, Bañuls AL, Schaffner F, Hendrickx G, Van Bortel W, Medlock JM (2015) Sampling strategies for phlebotomine sand flies (Diptera: Psychodidae) in Europe. Bulletin of Entomological Research 105: 664-678 doi

Aluru S, Hide M, Michel G, Bañuls AL, Marty P, Pomares C (2015) Multilocus microsatellite typing of Leishmania and clinical applications: a review. Parasite. 22: 16 doi

Austrup J, Ntais P, Christodoulou V, Dedet JP, Pratlong F, Karanis P, Antoniou M (2015) Frequency of MDR 1-related p-gp overexpression in Greek Leishmania isolates (vol 113, pg 1225, 2014). Parasitology Research 114: 3565-3565 doi

Bañuls AL, Sanou A & Godreuil S (2015) Mycobacterium tuberculosis a fully human bacterium. Biofutur. 361:36-37

Bañuls AL, Sanou A, Anh NTV, Godreuil S (2015) Mycobacterium tuberculosis: ecology and evolution of a human bacterium. Journal of Medical Microbiology 64: 1261-1269 doi

Bañuls AL, Sanou A, Godreuil S (2015) Mycobacterium tuberculosis : écologie et évolution d’une bactérie humaine. In Maladies Infectieuses. pp 79-102. Eds. M Vittecoq, B Roche, F Prugnolle, F Renaud & F Thomas. de Boeck Solal, Paris

Bastien P, Volf P, Depaquit J, Dondji B, Gallego M, Gangneux JP, Izri A, Marty P, Piarroux R, Pratlong F, Dedet JP (2015) Comments on Leishmania major in gorilla feces. Journal of Infectious Diseases 212: 505-U170 doi

Bourgoin A, Karabetsos A, Ouedraogo AS, Aberkan S, Bouzinbi N, Jean-Pierre H, Godreuil S (2015) Intrafamilial transmission of pulmonary tuberculosis due to Mycobacterium bovis. Medecine Et Maladies Infectieuses 45: 394-396 doi

Chaara D, Bañuls AL, Haouas N, Talignani L, Lami P, Mezhoud H, Harrat Z, Dedet JP, Babba H, Pratlong F (2015) Comparison of Leishmania killicki (syn. L. tropica) and Leishmania tropica population structure in Maghreb by microsatellite typing. PLoS Neglected Tropical Diseases 9: e0004204 doi

Chaara D, Ravel C, Bañuls AL, Haouas N, Lami P, Talignani L, El Baidouri F, Jaouadi K, Harrat Z, Dedet JP, Babba H & Pratlong F (2015) Evolutionary history of Leishmania killicki (synonymous Leishmania tropica) and taxonomic implications. Parasites & Vectors. 8 doi

Constantin de Magny G (2015) An ecology of the expanding health. Biofutur. 361: 47-49

Constantin de Magny G (2015) Ecologie de la santé: nouvelles perspectives en santé publique. In Les maladies infectieuses. pp 305-329 Eds. M Vittecoq, B Roche, F Prugnolle, F Renaud & F Thomas. de Boeck Solal, Paris

Fatima A, Faiza S, Hajiba F, Pratlong F, Dedet JP, Bouchra E, Asmae H, Bouchra D, Khalid H, Abderrahim S, Ibrahim A, Mohamed R (2015) Epidemiological characteristics of a new focus of cutaneous leishmaniasis caused by Leishmania tropica in Settat, Morocco. Acta Tropica 150: 116-121 doi

Haouas N, Remadi L, Chaara D, Chargui N, Dabghi R, Jbeniani H, Babba H & Ravel C (2015) Unexpected co-detection of promastigote and amastigote Leishmania forms in a human cutaneous lesion: implications for leishmaniasis physiopathology and treatment. Diagnostic Microbiology and Infectious Disease. 81: 18-20 doi

Harrabi M, Bettaieb J, Ghawar W, Toumi A, Zaâtour A, Yazidi R, Chaâbane S, Chalghaf B, Hide M, Bañuls AL, Ben Salah A (2015) Spatio-temporal genetic structuring of Leishmania major in Tunisia by microsatellite analysis. PLoS Neglected Tropical Diseases 9: e0004017 doi

Hauer A, De Cruz K, Cochard T, Godreuil S, Karoui C, Henault S, Bulach T, Bañuls AL, Biet F & Boschiroli ML (2015) Genetic evolution of Mycobacterium bovis causing tuberculosis in livestock and wildlife in France since 1978. PLoS One. 10: e0117103 doi

Kocher A, Gantier JC, Holota H, Jeziorski C, Coissac E, Bañuls AL, Girod R, Gaborit P, Murienne J (2015) Complete mitochondrial genome of Lutzomyia (Nyssomyia) umbratilis (Diptera: Psychodidae), the main vector of Leishmania guyanensis. Mitochondrial DNA 1-3 doi

Landier J, Constantin de Magny G, Garchitorena A, Guégan JF, Gaudart J, Marsollier L, Le Gall P, Giles-Vernick T, Eyangoh S, Fontanet A, Texier G (2015) Seasonal patterns of Buruli ulcer incidence, Central Africa, 2002-2012. Emerging Infectious Diseases 21: 1414-1417 doi

Liautaud B, Vignier N, Miossec C, Plumelle Y, Kone M, Delta D, Ravel C, Cabie A & Desbois N (2015) First case of visceral leishmaniasis caused by Leishmania martiniquensis. American Journal of Tropical Medicine and Hygiene. 92: 317-319 doi

Lima M, Estay SA, Fuentes R, Rubilar P, Broutin H, Chowell-Puente G (2015) Whooping cough dynamics in Chile (1932-2010): disease temporal fluctuations across a north-south gradient. BMC Infectious Diseases 15: 590 doi

Martin-Blondel G, Iriart X, El Baidouri F, Simon S, Mills D, Demar M, Pistone T, Le Taillandier T, Malvy D, Gangneux JP, Couppie P, Munckhof W, Marchou B, Ravel C, Berry A (2015) Outbreak of Leishmania braziliensis cutaneous leishmaniasis, Saül, French Guiana. Emerging Infectious Diseases 21: 892-894 doi

Massanet PL, Petit L, Louart B, Corne P, Richard C, Preiser, JC (2015) Nutrition rehabilitation in the intensive care unit. Journal of Parenteral and Enteral Nutrition. 39: 391-400 doi

Mathis A, Depaquit J, Dvorak V, Tuten H, Bañuls AL, Halada P, Zapata S, Lehrter V, Hlavackova K, Prudhomme J, Volf P, Sereno D, Kaufmann C, Pfluger V, Schaffner F (2015) Identification of phlebotomine sand flies using one MALDI-TOF MS reference database and two mass spectrometer systems. Parasites & Vectors. 8: 266 doi

Mourad R, Chevenet F, Dunn DT, Fearnhill E, Delpech V, Asboe D, Gascuel O, Hue S (2015) A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK. AIDS 29: 1917-1925 doi

Nguyen VAT, Nguyen HQ, Vu TT, Nguyen NAT, Duong CM, Tran THT, Nguyen HV, Dang DA, Bañuls AL (2015) Reduced turn-around time for Mycobacterium tuberculosis drug susceptibility testing with a proportional agar microplate assay. Clinical Microbiology and Infection 21: 1084-1092 doi

Prudhomme J, Rahola N, Toty C, Cassan C, Roiz D, Vergnes B, Thierry M, Rioux JA, Alten B, Sereno D, Bañuls AL (2015) Ecology and spatiotemporal dynamics of sandflies in the Mediterranean Languedoc region (Roquedur area, Gard, France). Parasites & Vectors 8: 642 doi

Prudhomme J, Toty C, Kasap OE, Rahola N, Vergnes B, Maia C, Campino L, Antoniou M, Jimenez M, Molina R, Cannet A, Alten B, Sereno D & Bañuls AL (2015) New microsatellite markers for multi-scale genetic studies on Phlebotomus ariasi Tonnoir, vector of Leishmania infantum in the Mediterranean area. Acta Tropica. 142: 79-85 doi

Rodriguez-Nava V, Durupt S, Chyderiotis S, Freydiere AM, Karsenty J, de Montclos M, Reix P, Durieu I, Nove-Josserand R, Chiron R, Bremont F, Tetu L, Murris M, Terru D, Godreuil S, Bergeron E, Freney J, Boiron P, Vandenesch F, Marchandin H, Segonds C, Doleans-Jordheim A (2015) A French multicentric study and review of pulmonary Nocardia spp. in cystic fibrosis patients. Medical Microbiology and Immunology 204: 493-504 doi

Rondy M, Launay O, Puig-Barbera J, Gefenaite G, Castilla J, Donati KD, Galtier F, Hak E, Guevara M, Costanzo S, Moren A, European Hospital IVE Network [dont Corne P] (2015) 2012/13 influenza vaccine effectiveness against hospitalised influenza A(H1N1)PDM09, A(H3N2) and B: estimates from a european network of hospitals. Eurosurveillance 20: 9-20 Unsp 21011 doi

Rougeron V, de Meeûs T & Bañuls AL (2015) A primer for Leishmania population genetic studies. Trends in Parasitology. 31: 52-59 doi

Rougeron V, de Meeûs T, Bañuls AL (2015) Response to Tibayrenc et al.: Can recombination in Leishmania parasites be so rare?. Trends in Parasitology 31: 280-281 doi

Shaw J, Pratlong F, Floeter-Winter L, Ishikawa E, El Baidouri F, Ravel C, Dedet JP (2015) Characterization of Leishmania (leishmania) waltoni n.sp (Kinetoplastida: Trypanosomatidae), the parasite responsible for diffuse cutaneous leishmaniasis in the Dominican Republic. American Journal of Tropical Medicine and Hygiene 93: 552-558 doi

Tomas-Perez M, Hide M, Riera C, Montoya L, Bañuls AL, Ribera E, Portus M, Fisa R (2015) Multilocus microsatellite typing of Leishmania infantum isolates in monitored Leishmania/HIV coinfected patients. Parasites & Vectors 8: 386 doi

Valdivia HO, Reis-Cunha JL, Rodrigues-Luiz GF, Baptista RP, Baldeviano GC, Gerbasi RV, Dobson DE, Pratlong F, Bastien P, Lescano AG, Beverley SM, Bartholomeu DC (2015) Comparative genomic analysis of Leishmania (viannia) peruviana and Leishmania (viannia) braziliensis. BMC Genomics 16: 715 doi


Bourgeois N, Laurens C, Bertout S, Balard Y, Krasteva D, Rispail P & Lachaud L (2014) Assessment of caspofungin susceptibility of Candida glabrata by the Etest (R), CLSI, and EUCAST methods, and detection of FKS1 and FKS2 mutations. European Journal of Clinical Microbiology & Infectious Diseases. 33: 1247-1252 doi

Brengues C, Ferre JB, Le Goff G, Lami P, Pratlong F, Pasteur N, Lagneau C, Simard F & Robert V (2014) A multiplex PCR to differentiate the two sibling species of mosquitoes Ochlerotatus detritus and Oc. coluzzii and evidence for further genetic heterogeneity within the Detritus complex. Infection, Genetics and Evolution. 28: 676-680 doi

Brunel AS, Bañuls AL, Marchandin H, Bouzinbi N, Morquin D, Jumas-Bilak E & Corne P (2014) Methicillin-sensitive Staphylococcus aureus CC398 in intensive care unit, France. Emerging Infectious Diseases. 20: 1511-1515 doi

Cassagne C, Pratlong F, Jeddi F, Benikhlef R, Aoun K, Normand AC, Faraut F, Bastien P & Piarroux R (2014) Identification of Leishmania at the species level with matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clinical Microbiology and Infection. 20: 551-557 doi

Chaara D, Haouas N, Dedet JP, Babba H & Pratlong F (2014) Leishmaniases in Maghreb: An endemic neglected disease. Acta Tropica. 132: 80-93 doi

Combes N, Jaffuel D, Cayla G, Granier M, Borel JC, Corne P, Jonquet O, Jaber S, Davy JM & Pepin JL (2014) Pressure-dependent hemodynamic effect of continuous positive airway pressure in severe chronic heart failure: A case series. International Journal of Cardiology. 171: E104-E105 doi

Constantin de Magny G, Hasan NA & Roche B (2014) How community ecology can improve our understanding of cholera dynamics. Frontiers in Microbiology. 5: 5 doi

Dedet JP (2014) Edmond and Etienne Sergent, two brothers and one Algerian fate. Biofutur. 58-61

Desbois N, Pratlong F, Quist D & Dedet JP (2014) Leishmania (Leishmania) martiniquensis n. sp (Kinetoplastida: Trypanosomatidae), description of the parasite responsible for cutaneous leishmaniasis in Martinique Island (French West Indies). Parasite. 21: 12 doi

Diaz-Saez V, Merino-Espinosa G, Morales-Yuste M, Corpas-Lopez V, Pratlong F, Morillas-Marquez F & Martin-Sanchez J (2014) High rates of Leishmania infantum and Trypanosoma nabiasi infection in wild rabbits (Oryctolagus cuniculus) in sympatric and syntrophic conditions in an endemic canine leishmaniasis area: Epidemiological consequences. Veterinary Parasitology. 202: 119-127 doi

Fatoux-Ardore M, Peysselon F, Weiss A, Bastien P, Pratlong F & Ricard-Blum S (2014) Large-scale investigation of Leishmania interaction networks with host extracellular matrix by surface plasmon resonance imaging. Infection and Immunity. 82: 594-606 doi [- erratum -]

Fiorini N, Lefort V, Chevenet F, Berry V & Chifolleau AMA (2014) CompPhy: a web-based collaborative platform for comparing phylogenies. BMC Evolutionary Biology. 14: 253 doi

Godreuil S, Leban N, Padilla A, Hamel R, Luplertlop N, Chauffour A, Vittecoq M, Hoh F, Thomas F, Sougakoff W, Lionne C, Yssel H & Missé D (2014) Aedesin: structure and antimicrobial activity against multidrug resistant bacterial strains. PLoS One. 9: e105441 doi

Haley BJ, Kokashvili T, Tskshvediani A, Janelidze N, Mitaishvili N, Grim CJ, Constantin de Magny G, Chen AJ, Taviani E, Eliashvili T, Tediashvili M, Whitehouse C, Colwell RR & Huq A (2014) Molecular diversity and predictability of Vibrio parahaemolyticus along the Georgian coastal zone of the Black Sea. Frontiers in Microbiology. 5: 45 doi

Jeddi F, Mary C, Aoun K, Harrat Z, Bouratbine A, Faraut F, Benikhlef R, Pomares C, Pratlong F, Marty P & Piarroux R (2014) Heterogeneity of molecular resistance patterns in antimony-resistant field isolates of Leishmania species from the western Mediterranean area. Antimicrobial Agents and Chemotherapy. 58: 4866-4874 doi

Laurens C, Hery-Arnaud G, Chiron R, Oziol E, Jean-Pierre H, Bouzinbi N, Perre PV, Bañuls AL & Godreuil S (2014) Sacroiliitis secondary to catheter-related bacteremia due to Mycobacterium abscessus (sensu stricto). Annals of Clinical Microbiology and Antimicrobials. 13: 9 doi

Massanet P, Jung B, Molinari N, Villiet M, Moulaire V, Roch-Torreilles I, Jaber S, Reynes J & Corne P (2014) Antifungal treatment for suspected or proved candidiasis in the critically ill. Annales Francaises d Anesthesie et de Reanimation. 33: 232-239 doi

Mouri O, Morizot G, Van der Auwera G, Ravel C, Passet M, Chartrel N, Joly I, Thellier M, Jaureguiberry S, Caumes E, Mazier D, Marinach-Patrice C & Buffet P (2014) Easy identification of Leishmania species by mass spectrometry. PLoS Neglected Tropical Diseases. 8: 2841 doi

Ntais P, Christodoulou V, Tsirigotakis N, Dokianakis E, Dedet JP, Pratlong F & Antoniou M (2014) Will the introduction of Leishmania tropica MON-58, in the island of Crete, lead to the settlement and spread of this rare zymodeme? Acta Tropica. 132: 125-130 doi

Pigott DM, Bhatt S, Golding N, Duda KA, Battle KE, Brady OJ, Messina JP, Balard Y, Bastien P, Pratlong F, Brownstein JS, Freifeld C, Mekaru SR, Gething PW, George DB, Myers MF, Reithinger R & Hay SI (2014) Global distribution maps of the Leishmaniases. Elife. 3: e02851 doi

Roche B, Broutin H, Choisy M, Godreuil S, Constantin de Magny G, Chevaleyre Y, Zucker JD, Breban R, Cazelles B & Simard F (2014) The niche reduction approach: an opportunity for optimal control of infectious diseases in low-income countries? BMC Public Health. 14: 753 doi

Sanou A, Tarnagda Z, Kanyala E, Zingue D, Nouctara M, Ganamé Z, Combary A, Hien H, Dembele M, Kabore A, Meda N, Van de Perre P, Neveu D, Bañuls AL & Godreuil S (2014) Mycobacterium bovis in Burkina Faso: epidemiologic and genetic links between human and cattle isolates. PLoS Neglected Tropical Diseases. 8: e3142 doi

Seblova V, Oury B, Eddaikra N, Ait-Oudhia K, Pratlong F, Gazanion E, Maia C, Volf P & Sereno D (2014) Transmission potential of antimony-resistant Leishmania field isolates. Antimicrobial Agents and Chemotherapy. 58: 6273-6276 doi

Singh S, Bouzinbi N, Chaturvedi V, Godreuil S & Kremer L (2014) In vitro evaluation of a new drug combination against clinical isolates belonging to the Mycobacterium abscessus complex. Clinical Microbiology and Infection. 20: O1124-O1127 doi

Tomas-Perez M, Khaldi M, Riera C, Mozo-Leon D, Ribas A, Hide M, Barech G, Benyettou M, Seghiri K, Doudou S & Fisa R (2014) First report of natural infection in hedgehogs with Leishmania major, a possible reservoir of zoonotic cutaneous leishmaniasis in Algeria. Acta Tropica. 135: 44-49 doi

Van der Auwera G, Ravel C, Verweij JJ, Bart A, Schonian G & Felgerf I (2014) Evaluation of four single-locus markers for Leishmania species discrimination by sequencing. Journal of Clinical Microbiology. 52: 1098-1104 doi

Yazdanparast E, Dos Anjos A, Garcia D, Loeuillet C, Shahbazkia HR & Vergnes B (2014) INsPECT, an open-source and versatile software for automated quantification of (Leishmania) Intracellular Parasites. PLoS Neglected Tropical Diseases. 8: e2850 doi


Agier L, Broutin H, Bertherat E, Djingarey MH, Lingani C, Perea W & Hugonnet S (2013) Timely detection of bacterial meningitis epidemics at district level: a study in three countries of the African Meningitis Belt. Transactions of the Royal Society of Tropical Medicine and Hygiene. 107: 30-36

Agier L, Deroubaix A, Martiny N, Yaka P, Djibo A & Broutin H (2013) Seasonality of meningitis in Africa and climate forcing: aerosols stand out. Journal of the Royal Society Interface. 10: 20120814 doi

Al-Tam F, Adam H, dos Anjos A, Lorieux M, Larmande P, Ghesquiere A, Jouannic S & Shahbazkia HR (2013) P-TRAP: a Panicle Trait Phenotyping tool. BMC Plant Biology. 13: 122 doi

Bañuls AL, Thomas F & Renaud F (2013) Of parasites and men. Infection, Genetics and Evolution. 20: 61-70 doi

Befort P, Corne P, Filleron T, Jung B, Bengler C, Jonquet O & Klouche K (2013) Prognosis and ICU outcome of systemic vasculitis. BMC Anesthesiology. 13: 27 doi

Blackwood JC, Cummings DAT, Broutin H, Iamsirithaworn S & Rohani P (2013) Deciphering the impacts of vaccination and immunity on pertussis epidemiology in Thailand. Proceedings of the National Academy of Sciences USA. 110: 9595-9600 doi

Chevenet F, Jung M, Peeters M, de Oliveira T & Gascuel O (2013) Searching for virus phylotypes. Bioinformatics. 29: 561-570 doi

Dar Y, Lounnas M, Teukeng FFD, Mouzet R, Courtioux B, Hurtrez-Boussès S, Vignoles P, Dreyfuss G & Rondelaud D (2013) Variations in local adaptation of allopatric Fasciola hepatica to French Galba truncatula in relation to parasite origin. Parasitology Research. 112: 2543-2549 doi

Dedet JP (2013) Edmond et Etienne Sergent et l'épopée de l'Institut Pasteur d'Algérie, une double biographie. Editions Domens. 372 pp.

Dedet JP, Carme B, Desbois N, Bourdoiseau G, Lachaud L & Pratlong F (2013) Epidemiology of autochthonous leishmaniases in France. Presse Medicale. 42: 1469-1481

El Baidouri F, Diancourt L, Berry V, Chevenet F, Pratlong F, Marty P & Ravel C (2013) Genetic structure and evolution of the Leishmania genus in Africa and Eurasia: what does MLSA tell us. PLoS Neglected Tropical Diseases. 7: e2255 doi

Faiman R, Abbasi I, Jaffe C, Motro Y, Nasereddin A, Schnur LF, Torem M, Pratlong F, Dedet JP & Warburg A (2013) A newly emerged cutaneous leishmaniasis focus in northern Israel and two new reservoir hosts of Leishmania major. PLoS Neglected Tropical Diseases. 7: e2058 doi

Gomis PF, Jean-Pierre H, Rousseau-Didelot MN, Compan B, Michon AL & Godreuil S (2013) Tigecycline: CMI 50/90 towards 1766 Gram-negative bacilli (3rd generation cephalosporins resistant enterobacteriaceae), Acinetobacter baumannii and Bacteroides fragilis group, University Hospital - Montpellier, 2008-2011. Pathologie Biologie. 61: 282-285 doi

Gouzelou E, Haralambous C, Antoniou M, Christodoulou V, Martinkovic F, Zivicnjak T, Smirlis D, Pratlong F, Dedet JP, Ozbel Y, Toz SO, Presber W, Schonian G & Soteriadou K (2013) Genetic diversity and structure in Leishmania infantum populations from southeastern Europe revealed by microsatellite analysis. Parasites & Vectors. 6: 342 doi

Hide M, Marion E, Pomares C, Fisa R, Marty P & Bañuls AL (2013) Parasitic genotypes appear to differ in leishmaniasis patients compared with asymptomatic related carriers. International Journal for Parasitology. 43: 389-397 doi

Hong DN, Huyen MNT, Lan NTN, Duong NH, Ngo VVN, Ngoc DT, Huu KT, Nguyen T, Do Chau V, Marcy O, Van de Perre P, Bañuls AL & Godreuil S (2013) Rifampin-resistant Mycobacterium bovis BCG-induced disease in HIV-infected infant, Vietnam. Emerging Infectious Diseases. 19: 1168-1170 doi

Jaouadi K, Haouas N, Chaara D, Boudabous R, Gorcii M, Kidar A, Depaquit J, Pratlong F, Dedet JP & Babba H (2013) Phlebotomine (Diptera, Psychodidae) bloodmeal sources in Tunisian cutaneous leishmaniasis foci: could Sergentomyia minuta, which is not an exclusive herpetophilic species, be implicated in the transmission of pathogens? Annals of the Entomological Society of America. 106: 79-85 doi

Jousselin E, Cruaud A, Genson G, Chevenet F, Foottit RG & Coeur d'Acier A (2013) Is ecological speciation a major trend in aphids? Insights from a molecular phylogeny of the conifer-feeding genus Cinara. Frontiers in Zoology. 10: 56 doi

Lachaud L, Dedet JP, Marty P, Faraut F, Buffet P, Gangneux JP, Ravel C, Bastien P & the working group for the notification of human leishmanioses in France (2013) Surveillance of leishmaniases in France, 1999 to 2012. Eurosurveillance. 18: 38-44

Larreche S, Launay G, Galluzzo CW, Bousquet A, Eperon G, Pilo J-E, Ravel C, Chappuis F, Dupin M & Merens A (2013) Cluster of zoonotic cutaneous leishmaniasis (Leishmania major) in European travelers returning from Turkmenistan. Journal of Travel Medicine. 20: 400-402 doi

Morizot G, Kendjo E, Mouri O, Thellier M, Perignon A, Foulet F, Cordoliani F, Bourrat E, Laffitte E, Alcaraz I, Bodak N, Ravel C, Vray M, Grogl M, Mazier D, Caumes E, Lachaud L, Buffet PA & the Cutaneous Leishmaniasis French Study Group (2013) Travelers with cutaneous leishmaniasis cured without systemic therapy. Clinical Infectious Diseases. 57: 370-380 doi

Ntais P, Sifaki-Pistola D, Christodoulou V, Messaritakis I, Pratlong F, Poupalos G & Antoniou M (2013) Leishmaniases in Greece. American Journal of Tropical Medicine and Hygiene. 89: 906-915 doi

Phung TN, Caruso D, Godreuil S, Keck N, Vallaeys T & Avarre JC (2013) Rapid detection and identification of nontuberculous mycobacterial pathogens in fish by using high-resolution melting analysis. Applied and Environmental Microbiology. 79: 7837-7845 doi

Pratlong F, Lami P, Ravel C, Balard Y, Dereure J, Serres G, El Baidouri F & Dedet JP (2013) Geographical distribution and epidemiological features of Old World Leishmania infantum and Leishmania donovani foci, based on the isoenzyme analysis of 2277 strains. Parasitology. 140: 423-434 doi

Rioux JA, Carron S, Dereure J, Perieres J, Zeraia L, Franquet E, Babinot M, Gallego M & Prudhomme J (2013) Ecology of leishmaniasis in the South of France. 22. Reliability and representativeness of 12 Phlebotomus ariasi, P. perniciosus and Sergentomyia minuta (Diptera: Psychodidae) sampling stations in Vallespir (eastern French Pyrenees region). Parasite. 20: 34 doi

Van der Auwera G, Maes I, De Doncker S, Ravel C, Cnops L, Van Esbroeck M, Van Gompel A, Clerinx J & Dujardin JC (2013) Heat-shock protein 70 gene sequencing for Leishmania species typing in European tropical infectious disease clinics. Eurosurveillance. 18: 40-48

Zangger H, Ronet C, Desponds C, Kuhlmann FM, Robinson J, Hartley MA, Prevel F, Castiglioni P, Pratlong F, Bastien P, Muller N, Parmentier L, Saravia NG, Beverley SM & Fasel N (2013) Detection of Leishmania RNA virus in Leishmania parasites. PLoS Neglected Tropical Diseases. 7: e2006 doi

Zingue D, Hien H, Meda N, Zida S, Kabore A, Sanou A, Ouedraogo AS, Gomgnimbou M, Diande S, Tarnagda Z & Godreuil S (2013) Advantages and drawbacks of expectoration decontamination methods for tuberculosis and anti-tuberculosis drug resistance diagnosis. Annales de Biologie Clinique. 71: 283-291 doi


Ait-Oudhia K, Gazanion E, Sereno D, Oury B, Dedet JP, Pratlong F & Lachaud L (2012) In vitro susceptibility to antimonials and amphotericin B of Leishmania infantum strains isolated from dogs in a region lacking drug selection pressure. Veterinary Parasitology. 187: 386-393 doi

Al-Tam F, Brunel AS, Bouzinbi N, Corne P, Bañuls AL & Shahbazkia HR (2012) DNAGear- a free software for spa type identification in Staphylococcus aureus. BMC Research Notes. 5: 642-642 doi

Azmi K, Schnur L, Schonian G, Nasereddin A, Pratlong F, El Baidouri F, Ravel C, Dedet JP, Ereqat S & Abdeen Z (2012) Genetic, serological and biochemical characterization of Leishmania tropica from foci in northern Palestine and discovery of zymodeme MON-307. Parasites & Vectors. 5:121 doi

Baneth G, Bourdeau P, Bourdoiseau G, Bowman D, Breitschwerdt E, Capelli G, Cardoso L, Dantas-Torres F, Day M, Dedet JP, Dobler G, Ferrer L, Irwin P, Kempf V, Kohn B, Lappin M, Little S, Maggi R, Miro G, Naucke T, Oliva G, Otranto D, Penzhorn B, Pfeffer M, Roura X, Sainz A, Shaw S, Shin S, Solano-Gallego L, Straubinger R, Traub R, Trees A, Truyen U, Demonceau T, Fitzgerald R, Gatti D, Hostetler J, Kilmer B, Krieger K, Mencke N, Mendao C, Mottier L, Pachnicke S, Rees B, Siebert S, Stanneck D, Mingote MT, von Simson C & Weston S (2012) Vector-borne diseases - constant challenge for practicing veterinarians: recommendations from the CVBD World Forum. Parasites & Vectors. 5: 55 doi

Befort P, Corne P, Godreuil S, Jung B & Jonquet O (2012) Clinical review of eight patients with acute respiratory distress syndrome due to pulmonary tuberculosis. Scandinavian Journal of Infectious Diseases. 44: 222-224 doi

Benavides JA, Godreuil S, Bodenham R, Ratiarison S, Devos C, Petretto MO, Raymond M & Escobar-Paramo P (2012) No evidence for transmission of antibiotic-resistant Escherichia coli strains from humans to wild western lowland gorillas in Lope National Park, Gabon. Applied and Environmental Microbiology. 78: 4281-4287 doi

Berdjane-Brouk Z, Kone AK, Djimde AA, Charrel RN, Ravel C, Delaunay P, del Giudice P, Diarra AZ, Doumbo S, Goita S, Thera MA, Depaquit J, Marty P, Doumbo OK & Izri A (2012) First detection of Leishmania major DNA in Sergentomyia (Spelaeomyia) darlingi from cutaneous leishmaniasis foci in Mali. PLoS One. 7: e28266 doi

Bharti N, Broutin H, Grais RF, Ferrari MJ, Djibo A, Tatem AJ & Grenfell BT (2012) Spatial dynamics of meningococcal meningitis in Niger: observed patterns in comparison with measles. Epidemiology and Infection. 140: 1356-1365 doi

Blackwood JC, Cummings DAT, Broutin H, Iamsirithaworn S & Rohani P (2012) The population ecology of infectious diseases: pertussis in Thailand as a case study. Parasitology. 139: 1888-1898 doi

Boissière A, Tchioffo MT, Bachar D, Abate L, Marie A, Nsango SE, Shahbazkia HR, Awono-Ambene PH, Levashina EA, Christen R & Morlais I (2012) Midgut microbiota of the malaria mosquito vector Anopheles gambiae and interactions with Plasmodium falciparum infection. PLoS Pathogens. 8: e1002742 doi

Broutin V, Bañuls AL, Aubry A, Keck N, Choisy M, Bernardet JF, Michel C, Raymond JC, Libert C, Barnaud A, Stragier P, Portaels F, Terru D, Belon C, Dereure O, Gutierrez C, Boschiroli ML, Van De Perre P, Cambau E & Godreuil S (2012) Genetic diversity and population structure of Mycobacterium marinum: new insights into host and environmental specificities. Journal of Clinical Microbiology. 50: 3627-3634 doi

Bualert L, Charungkiattikul W, Thongsuksai P, Mungthin M, Siripattanapipong S, Khositnithikul R, Naaglor T, Ravel C, El Baidouri F & Leelayoova S (2012) Case Report: autochthonous disseminated dermal and visceral leishmaniasis in an AIDS patient, Southern Thailand, caused by Leishmania siamensis. American Journal of Tropical Medicine and Hygiene. 86: 821-824 doi

Chai N, Bronchain O, Panteix G, Godreuil S, de Medeiros C, Saunders R, Bouts T & de Luze A (2012) Propagation method of saving valuable strains from a Mycobacterium liflandii infection in western clawed frogs (Silurana tropicalis). Journal of Zoo and Wildlife Medicine. 43: 15-19

Chargui N, Haouas N, Jaouadi K, Gorcii M, Pratlong F, Dedet JP, Mezhoud H & Babba H (2012) Usefulness of a PCR-based method in the detection and species identification of Leishmania from clinical samples. Pathologie Biologie. 60: 375-379 doi

Christodoulou V, Antoniou M, Ntais P, Messaritakis I, Ivovic V, Dedet JP, Pratlong F, Dvorak V & Tselentis Y (2012) Re-emergence of visceral and cutaneous leishmaniasis in the Greek island of Crete. Vector-Borne and Zoonotic Diseases. 12: 214-222 doi

Cojean S, Houze S, Haouchine D, Huteau F, Lariven S, Hubert V, Michard F, Bories C, Pratlong F, Le Bras J, Loiseau PM & Matheron S (2012) Leishmania resistance to miltefosine associated with genetic marker. Emerging Infectious Diseases. 18: 704-706 doi

Constantin de Magny G, Thiaw W, Kumar V, Manga NM, Diop BM, Gueye L, Kamara M, Roche B, Murtugudde R & Colwell RR (2012) Cholera Outbreak in Senegal in 2005: Was Climate a Factor? PLoS One. 7: e44577 doi

Gazanion E, Seblova V, Votypka J, Vergnes B, Garcia D, Volf P & Sereno D (2012) Leishmania infantum nicotinamidase is required for late-stage development in its natural sand fly vector, Phlebotomus perniciosus. International Journal for Parasitology. 42: 323-327 doi

Godreuil S, Marchandin H, Michon AL, Ponsada M, Chyderiotis G, Brisou P, Bhat A & Panteix G (2012) Mycobacterium riyadhense pulmonary infection, France and Bahrain. Emerging Infectious Diseases. 18: 176-178 doi

Gouzelou E, Haralambous C, Amro A, Mentis A, Pratlong F, Dedet JP, Votypka J, Volf P, Toz SO, Kuhls K, Schoenian G & Soteriadou K (2012) Multilocus microsatellite typing (MLMT) of strains from Turkey and Cyprus reveals a novel monophyletic L. donovani sensu lato group. PLoS Neglected Tropical Diseases. 6: e1507 doi

Haouas N, Chaker E, Chargui N, Gorcii M, Belhadj S, Kallel K, Aoun K, Akrout FM, Ben Said M, Pratlong F, Dedet JP, Mezhoud H, Lami P, Zribi M, Azaiez R & Babba H (2012) Geographical distribution updating of Tunisian leishmaniasis foci: About the isoenzymatic analysis of 694 strains. Acta Tropica. 124: 221-228 doi

Jaouadi K, Depaquit J, Haouas N, Chaara D, Gorcii M, Chargui N, Dedet JP, Pratlong F, Boubabous R & Babba H (2012) Twenty-four new human cases of cutaneous leishmaniasis due to Leishmania killicki in Metlaoui, southwestern Tunisia. Probable role of Phlebotomus sergenti in the transmission. Acta Tropica. 122: 276-283 doi

Kasbari M, Ravel C, Harold N, Pesson B, Schaffner F & Depaquit J (2012) Possibility of leishmaniasis transmission in Jura, France. Emerging Infectious Diseases. 18: 1030-1030 doi

Libert C, Ravel C, Pratlong F, Lami P, Dereure J & Keck N (2012) Leishmania infantum infection in two captive Barbary lions (Panthera leo leo). Journal of Zoo and Wildlife Medicine. 43: 685-688

Mollahosseini A, Rossignol M, Pennetier C, Cohuet A, dos Anjos A, Chandre F & Shahbazkia HR (2012) A user-friendly software to easily count Anopheles egg batches. Parasites & Vectors. 5: 122 doi [- download -] pdf

Morquin D, Le Moing V, Mura T, Makinson A, Klouche K, Jonquet O, Reynes J & Corne P (2012) Short- and long-term outcomes of HIV-infected patients admitted to the intensive care unit: impact of antiretroviral therapy and immunovirological status. Annals of Intensive Care. 2: 25-25 doi

Ngouateu OB, Kollo P, Ravel C, Dereure J, Kamtchouing P, Same-Ekobo A, von Stebut E, Maurer M & Dondji B (2012) Clinical features and epidemiology of cutaneous leishmaniasis and Leishmania major/HIV co-infection in Cameroon: results of a large cross-sectional study. Transactions of the Royal Society of Tropical Medicine and Hygiene. 106: 137-142 doi

Nguyen TVA, Choisy M, Nguyen DH, Thanh HTT, Kim LTP, Phuong TTD, Philippe J, Nguyen TS, Ho ML, Tran SV, Bañuls AL & Dang DA (2012) High prevalence of Beijing and EAI4-VNM genotypes among M. tuberculosis isolates in Northern Vietnam: sampling effect, rural and urban disparities. PLoS One. 7: e45553 doi

Prudhomme J, Gunay F, Rahola N, Ouanaimi F, Guernaoui S, Boumezzough A, Bañuls AL, Sereno D & Alten B (2012) Wing size and shape variation of Phlebotomus papatasi (Diptera: Psychodidae) populations from the south and north slopes of the Atlas Mountains in Morocco. Journal of Vector Ecology. 37: 137-147 doi

Ranasinghe S, Zhang WW, Wickremasinghe R, Abeygunasekera P, Chandrasekharan V, Athauda S, Mendis S, Hulangamuwa S, Matlashewski G & Pratlong F (2012) Leishmania donovani zymodeme MON-(37) isolated from an autochthonous visceral leishmaniasis patient in Sri Lanka. Pathogens and Global Health. 106: 421-424 doi

Sterkers Y, Pratlong F, Albaba S, Loubersac J, Picot M-C, Pretet V, Issert E, Boulot P & Bastien P (2012) Novel interpretation of molecular diagnosis of congenital toxoplasmosis according to gestational age at the time of maternal infection. Journal of Clinical Microbiology. 50: 3944-3951 doi

Taype CA, Agapito JC, Accinelli RA, Espinoza JR, Godreuil S, Goodman SJ, Bañuls AL & Shaw MA (2012) Genetic diversity, population structure and drug resistance of Mycobacterium tuberculosis in Peru. Infection, Genetics and Evolution. 12: 577-585 doi

Vase MO, Hellberg YK, Larsen CS, Petersen E, Schaumburg H, Bendix K, Ravel C, Bastien P, Christensen M & d'Amore F (2012) Development of splenic marginal zone lymphoma in a HIV-negative patient with visceral leishmaniasis. Acta Haematologica. 128: 20-22 doi

Zapata S, Mejía L, Le Pont F, León R, Pesson B, Ravel C, Bichaud L, Charrel R, Cruaud C, Trueba G & Depaquit J (2012) A study of a population of Nyssomyia trapidoi (Diptera: Psychodidae) caught on the Pacific coast of Ecuador. Parasites & Vectors. 5:144 doi


Ait-Oudhia K, Gazanion E, Oury B, Vergnes B & Sereno D (2011) The fitness of antimony-resistant Leishmania parasites: lessons from the field. Trends in Parasitology. 27: 141-142 doi

Ait-Oudhia K, Gazanion E, Vergnes B, Oury B & Sereno D (2011) Leishmania antimony resistance: what we know what we can learn from the field. Parasitology Research. 109: 1225-1232 doi

Ait-Oudhia K, Harrat Z, Benikhlef R, Dedet JP & Pratlong F (2011) Canine Leishmania infantum enzymatic polymorphism: A review including 1023 strains of the Mediterranean area, with special reference to Algeria. Acta Tropica. 118: 80-86 doi

Banakar V, Constantin de Magny G, Jacobs J, Murtugudde R, Huq A, Wood RJ & Colwell RR (2011) Temporal and spatial variability in the distribution of Vibrio vulnificus in the Chesapeake Bay: A hindcast study. Ecohealth. 8: 456-467 doi

Bañuls AL, Bastien P, Pomares C, Arevalo J, Fisa R & Hide M (2011) Clinical pleiomorphism in human leishmaniases, with special mention of asymptomatic infection. Clinical Microbiology and Infection. 17: 1451-1461 doi

Befort P, Corne P, Riviere B, Bourdin A & Jonquet O (2011) Ecthyma gangrenosum and Pseudomonas aeruginosa septicemia in intensive care unit. Annales Francaises d Anesthesie et de Reanimation. 30: 80-82 doi

Boubidi SC, Benallal K, Boudrissa A, Bouiba L, Bouchareb B, Garni R, Bouratbine A, Ravel C, Dvorak V, Votypka J, Volf P & Harrat Z (2011) Phlebotomus sergenti (Parrot, 1917) identified as Leishmania killicki host in Ghardaia, south Algeria. Microbes and Infection. 13: 691-696 doi

Buffet PA, Rosenthal E, Gangneux JP, Lightburne E, Couppie P, Morizot G, Lachaud L, Marty P & Dedet JP (2011) Therapy of leishmaniasis in France: Consensus on proposed guidelines. Presse Medicale. 40: 173-184 doi

Caron J, Michot C, Fabre S, Godreuil S, Guillot B & Dereure O (2011) Aggressive cutaneous infection with Mycobacterium marinum in two patients receiving anti-tumor necrosis factor-alfa agents. Journal of the American Academy of Dermatology. 65: 1060-1062 doi

Chowell G, Cazelles B, Broutin H & Munayco CV (2011) The influence of geographic and climate factors on the timing of dengue epidemics in Peru, 1994-2008. BMC Infectious Diseases 8: 164 doi pdf

Constantin de Magny G, Mozumder PK, Grim CJ, Hasan NA, Naser MN, Alam M, Sack RB, Huq A & Colwell RR (2011) Role of zooplankton diversity in Vibrio cholerae population dynamics and in the incidence of cholera in the Bangladesh sundarbans. Applied and Environmental Microbiology. 77: 6125-6132 doi

Faucher B, Pomares C, Fourcade S, Benyamine A, Marty P, Pratlong L, Faraut F, Mary C, Piarroux R, Dedet JP & Pratlong F (2011) Mucosal Leishmania infantum leishmaniasis: Specific pattern in a multicentre survey and historical cases. Journal of Infection. 63: 76-82 doi

Faye B, Bucheton B, Bañuls AL, Senghor MW, Niang AA, Diedhiou S, Konate O, Dione MM, Hide M, Mellul S, Knecht R, Delaunay P, Marty P & Gaye O (2011) Seroprevalence of Leishmania infantum in a rural area of Senegal: analysis of risk factors involved in transmission to humans. Transactions of the Royal Society of Tropical Medicine and Hygiene. 105: 333-340 doi

Franco AO, Davies CR, Mylne A, Dedet JP, Gallego M, Ballart C, Gramiccia M, Gradoni L, Molina R, Galvez R, Morillas-Marquez F, Baron-Lopez S, Pires CA, Afonso MO, Ready PD & Cox J (2011) Predicting the distribution of canine leishmaniasis in western Europe based on environmental variables. Parasitology. 138: 1878-1891 doi

Gazanion E, Garcia D, Silvestre R, Gerard C, Guichou JF, Labesse G, Seveno M, Cordeiro-Da-Silva A, Ouaissi A, Sereno D & Vergnes B (2011) The Leishmania nicotinamidase is essential for NAD(+) production and parasite proliferation. Molecular Microbiology. 82: 21-38 doi

Gazanion E, Vergnes B, Seveno M, Garcia D, Oury B, Ait-Oudhia K, Ouaissi A & Sereno D (2011) In vitro activity of nicotinamide/antileishmanial drug combinations. Parasitology International. 60: 19-24 doi

Jaouadi K, Haouas N, Chaara D, Gorcii M, Chargui N, Augot D, Pratlong F, Dedet JP, Ettlijani S, Mezhoud H & Babba H (2011) First detection of Leishmania killicki (Kinetoplastida, Trypanosomatidae) in Ctenodactylus gundi (Rodentia, Ctenodactylidae), a possible reservoir of human cutaneous leishmaniasis in Tunisia. Parasites & Vectors. 4: 159 doi

Jung B, Rimmele T, Le Goff C, Chanques G, Corne P, Jonquet O, Muller L, Lefrant JY, Guervilly C, Papazian L, Allaouchiche B, Jaber S & AzuRea G (2011) Severe metabolic or mixed acidemia on intensive care unit admission: incidence, prognosis and administration of buffer therapy. a prospective, multiple-center study. Critical Care. 15: doi

Kluger N, Terru D & Godreuil S (2011) Bacteriological and fungal survey of commercial tattoo inks used in daily practice in a tattoo parlour. Journal of the European Academy of Dermatology and Venereology. 25: 1230-1231 doi

Mougin B, Avenel-Audran M, Hasseine L, Martin L, Cottin J, Pomares C, Delaunay P, Marty P, Ravel C, Chabasse D & Abgueguen P (2011) Case report: A cutaneous ulcer resulting from Mycobacterium ulcerans-Leishmania braziliensis coinfection in South America. American Journal of Tropical Medicine and Hygiene. 85: 897-899 doi

Rougeron V, Bañuls AL, Carme B, Simon S, Couppie P, Nacher M, Hide M & De Meeus T (2011) Reproductive strategies and population structure in Leishmania: substantial amount of sex in Leishmania Viannia guyanensis. Molecular Ecology. 20: 3116-3127 doi

Rougeron V, Catzeflis F, Hide M, De Meeus T & Bañuls AL (2011) First clinical case of cutaneous leishmaniasis due to Leishmania (Viannia) braziliensis in a domestic cat from French Guiana. Veterinary Parasitology. 181: 325-328 doi

Rougeron V, de Meeûs T, Hide M, Le Falher G, Bucheton B, Dereure J, El-Safi S, Dessein A & Bañuls AL (2011) Multifaceted population structure and reproductive strategy in Leishmania donovani complex in one Sudanese village. PLoS Neglected Tropical Diseases. 5: e1448 doi

Senghor MW, Faye MN, Faye B, Diarra K, Elguero E, Gaye O, Bañuls AL & Niang AA (2011) Ecology of phlebotomine sand flies in the rural community of Mont Rolland (Thies region, Senegal): area of transmission of canine leishmaniasis. PLoS One. 6: e14773 doi

Sterkers Y, Ribot J, Albaba S, Issert E, Bastien P & Pratlong F (2011) Diagnosis of congenital toxoplasmosis by polymerase chain reaction on neonatal peripheral blood. Diagnostic Microbiology and Infectious Disease. 71: 174-176 doi


Ajithkumar K, Madhavilatha GK, Sulekha B, Godreuil S, Anilkumar AK, Girija K & Mundayoor S (2010) Do Mycobacterium marinum infections occur in India? Indian Journal of Dermatology Venereology & Leprology. 76: 191-U102

Befort P, Corne P, Bourdin A, Bommart S & Jonquet O (2010) Pleural effusion, cystic pulmonary disease and renal mass. Revue des Maladies Respiratoires. 27: 497-499

Bruneel F, Tubach F, Corne P, Megarbane B, Mira JP, Peytel E, Camus C, Schortgen F, Azoulay E, Cohen Y, Georges H, Meybeck A, Hyvernat H, Trouillet JL, Frenoy E, Nicolet L, Roy C, Durand R, Le Bras J, Wolff M & Grp SS (2010) Severe imported falciparum malaria: a cohort study in 400 critically ill adults. PLoS One. 5: e13236

Chamaille L, Tran A, Meunier A, Bourdoiseau G, Ready P & Dedet JP (2010) Environmental risk mapping of canine leishmaniasis in France. Parasites & Vectors. 3: 31

Chevenet F, Croce O, Hebrard M, Christen R & Berry V (2010) ScripTree: scripting phylogenetic graphics. Bioinformatics. 26: 1125-1126

Faye B, Bañuls, AL, Bucheton B, Dione MM, Bassanganam O, Hide M, Dereure J, Choisy M, Ndiaye JL, Konaté O, Claire M, Senghor MW, Faye MN, Sy I, Niang AA, Molez JF, Victoir K, Marty P, Delaunay P, Knecht R, Mellul S, Diedhiou S & Gaye O (2010) Canine visceral leishmaniasis caused by Leishmania infantum in Senegal: risk of emergence in humans? Microbes and Infection. 14: 1219-1225 pdf

Godreuil S, Jeziorski E, Bañuls AL, Fraisse T, van de Perre P & Boschiroli ML (2010) Intrafamilial cluster of pulmonary Tuberculosis due to Mycobacterium bovis of the African 1 Clonal Complex. Journal of Clinical Microbiology. 48: 4680-4683

Godreuil S, Renaud F, Choisy M, Depina JJ, Garnotel E, Morillon M, Van de Perre P & Bañuls AL (2010) Highly structured genetic diversity of the Mycobacterium tuberculosis population in Djibouti. Clinical Microbiology and Infection. 16: 1024-1026

Haouas N, Garrab S, Gorcii M, Khorchani H, Chargui N, Ravel C, Mezhoud H & Babba H (2010) Development of a polymerase chain reaction-restriction fragment length polymorphism assay for Leishmania major/Leishmania killicki/Leishmania infantum discrimination from clinical samples, application in a Tunisian focus. Diagnostic Microbiology and Infectious Disease. 68: 152-158

Hide M (2010) Etude comparative des caractères génétiques du complexe Leishmania (Leishmania) donovani, agent de la leishmaniose viscérale. In Les leishmanioses : Biodiversité et Pathogénicité. Saarbrucken: Editions universitaires europeennes.

Jaber S, Jung B, Corne P, Sebbane M, Muller L, Chanques G, Verzilli D, Jonquet O, Eledjam JJ & Lefrant JY (2010) An intervention to decrease complications related to endotracheal intubation in the intensive care unit: a prospective, multiple-center study. Intensive Care Medicine. 36: 248-255

Lavine J, Broutin H, Harvill ET & Bjornstad ON (2010) Imperfect vaccine-induced immunity and whooping cough transmission to infants. Vaccine. 29: 11-16 pdf

Martinez JS, Le Falher G, Corne P, Bourdin A, Lequellec A, Delabre JP, Makinson A, Hansel S, Reynes J & Le Moing V (2010) Adherence to antibiotherapy guidelines for acute community-acquired pneumonia in adults, in a teaching hospital. Médecine et Maladies Infectieuses. 40: 468-475

Massanet P, Corne P, Conseil M, Perrigault PF, Lachaud L, Jaber S, Calvet B, Jonquet O & Reynes J (2010) Antifungal treatments of candidemia in non-neutropenic patients: Evaluation of practice in intensive care units. Médecine et Maladies Infectieuses. 40: 644-649

Mazeris A, Soteriadou K, Dedet JP, Haralambous C, Tsatsaris A, Moschandreas J, Messaritakis I, Christodoulou V, Papadopoulos B, Ivovic V, Pratlong F, Loucaides F & Antoniou M (2010) Leishmaniases and the Cyprus Paradox. American Journal of Tropical Medicine and Hygiene. 82: 441-448

Mercier A, Devillard S, Ngoubangoye B, Bonnabau H, Bañuls AL, Durand P, Salle B, Ajzenberg D & Darde ML (2010) Additional haplogroups of Toxoplasma gondii out of Africa: population structure and mouse-virulence of strains from Gabon. PLoS Neglected Tropical Diseases. 4: e876

Panteix G, Gutierrez MC, Boschiroli ML, Rouviere M, Plaidy A, Pressac D, Porcheret H, Chydenotis G, Ponsada M, Van Oortegem K, Salloum S, Cabuzel S, Bañuls AL, Van de Perre P & Godreuil S (2010) Pulmonary tuberculosis due to Mycobacterium microti: a study of six recent cases in France. Journal of Medical Microbiology. 59: 984-989

Rougeron V, de Meeûs T, Hide M, Waleckx E, Dereure J, Arevalo J, Llanos-Cuentas A & Bañuls AL (2010) A battery of 12 microsatellite markers for genetic analysis of the Leishmania (Viannia) guyanensis complex. Parasitology. 137: 1879-1884 pdf

Rougeron V, de Meeûs T, Ouraga SK, Hide M & Bañuls AL (2010) “Everything you always wanted to know about sex (but were afraid to ask)” in Leishmania after two decades of laboratory and field analyses. PLoS Pathogens. 6: e1001004


Ait-Oudhia K, Lami P, Lesceu S, Harrat Z, Hamrioui B, Dedet JP & Pratlong F (2009) Increase in the prevalence of canine leishmaniasis in urban Algiers (Algeria) following the 2003 earthquake. Annals of Tropical Medicine and Parasitology. 103: 679-692

Ajzenberg D, Yera H, Marty P, Paris L, Dalle F, Menotti J, Aubert D, Franck J, Bessieres MH, Quinio D, Pelloux H, Delhaes L, Desbois N, Thulliez P, Robert-Gangneux F, Kauffmann-Lacroix C, Pujol S, Rabodonirina M, Bougnoux ME, Cuisenier B, Duhamel C, Duong TH, Filisetti D, Flori P, Gay-Andrieu F, Pratlong F, Nevez G, Totet A, Carme B, Bonnabau H, Darde ML & Villena I (2009) Genotype of 88 Toxoplasma gondii isolates associated with Toxoplasmosis in immunocompromised patients and correlation with clinical findings. Journal of Infectious Diseases. 199: 1155-1167

Ajzenberg D, Yera H, Marty P, Paris L, Dalle F, Menotti J, Aubert D, Franck J, Bessieres MH, Quinio D, Pelloux H, Delhaes L, Desbois N, Thulliez P, Robert-Gangneux F, Kauffmann-Lacroix C, Pujol S, Rabodonirina M, Bougnoux ME, Cuisenier B, Duhamel C, Duong TH, Filisetti D, Flori P, Gay-Andrieu F, Pratlong F, Nevez G, Totet A, Carme B, Darde ML & Villena I (2009) Toxoplasma strain nomenclature reply. Journal of Infectious Diseases. 200: 1012-1013

Alam MZ, Haralambous C, Kuhls K, Gouzelou E, Sgouras D, Soteriadou K, Schnur L, Pratlong F & Schonian G (2009) The paraphyletic composition of Leishmania donovani zymodeme MON-37 revealed by multilocus microsatellite typing. Microbes and Infection. 11: 707-715

Berens-Riha N, Fleischmann E, Pratlong F, Bretzel G, von Sonnenburg F & Loscher T (2009) Cutaneous Leishmaniasis (Leishmania tropica) in a German tourist after travel to Greece. Journal of Travel Medicine. 16: 220-222

Byarugaba F, Etter EMC, Godreuil S & Grimaud P (2009) Pulmonary Tuberculosis and Mycobacterium bovis, Uganda. Emerging Infectious Diseases. 15: 124-125

Chargui N, Amro A, Haouas N, Schonian G, Babba H, Schmidt S, Ravel C, Lefebvre M, Bastien P, Chaker E, Aoun K, Zribi M & Kuhls K (2009) Population structure of Tunisian Leishmania infantum and evidence for the existence of hybrids and gene flow between genetically different populations. International Journal for Parasitology. 39: 801-811

Constantin de Magny G, Renaud F, Durand P & Guégan JF (2009) Health ecology: a new tool, the macroscope. Ecology and evolution of parasitism. Oxford University Press. (Eds. Thomas F, Guégan JF & Renaud F). pp 129-148 pdf

Dedet JP (2009) Current situation of leishmaniasis in Europe. Tropical Medicine & International Health. 14: 19-19

Dereure J, Vanwambeke SO, Male P, Martinez S, Pratlong F, Balard Y & Dedet JP (2009) The potential effects of global warming on changes in canine leishmaniasis in a focus outside the classical area of the disease in southern France. Vector-Borne and Zoonotic Diseases. 9: 687-694

Harrat Z, Boubidi SC, Pratlong F, Benikhlef R, Selt B, Dedet JP, Ravel C & Belkaid M (2009) Description of a dermatropic Leishmania close to L. killicki (Rioux., Lanotte & Pratlong 1986) in Algeria. Transactions of the Royal Society of Tropical Medicine and Hygiene. 103: 716-720

Lachaud L, Calas O, Picot MC, Albaba S, Bourgeois N & Pratlong F (2009) Value of 2 IgG avidity commercial tests used alone or in association to date toxoplasmosis contamination. Diagnostic Microbiology and Infectious Disease. 64: 267-274

Laurent T, Van der Auwera G, Hide M, Mertens P, Quispe-Tintaya W, Deborggraeve S, de Doncker S, Lectipteux T, Bañuls AL, Büscher P & Dujardin JC (2009) Identification of Old World Leishmania spp. by specific polymerase chain reaction amplification of cysteine proteinase B genes and rapid dipstick detection. Diagnostic Microbiology and Infectious Disease. 63: 173-181 pdf

Luong MS, Bret C, Godreuil S, Terru D, Chong G, Vetromile F, Marchandin H & Mourad G (2009) Pyoderma Vegetans in a renal transplant recipient: first case of human infection with Nocardia vinacea. Transplantation. 87: 1898-1899

Marchandin H, Battistella P, Calvet B, Darbas H, Frapier JM, Jean-Pierre H, Parer S, Jumas-Bilak E, Van de Perre P & Godreuil S (2009) Pacemaker surgical site infection caused by Mycobacterium goodii. Journal of Medical Microbiology. 58: 517-520

Maubon D, Thurot-Guillou C, Ravel C, Leccia MT & Pelloux H (2009) Leishmania killicki imported from Tunisian Desert. Emerging Infectious Diseases. 15: 1864-1865

Millan AS, Depardieu F, Godreuil S & Courvalin P (2009) VanB-type Enterococcus faecium clinical isolate successively inducibly resistant to, dependent on, and constitutively resistant to Vancomycin. Antimicrobial Agents and Chemotherapy. 53: 1974-1982

Muller B, Hilty M, Berg S, Garcia-Pelayo MC, Dale J, Boschiroli ML, Cadmus S, Ngandolo BNR, Godreuil S, Diguimbaye-Djaibe C, Kazwala R, Bonfoh B, Njanpop-Lafourcade BM, Sahraoui N, Guetarni D, Aseffa A, Mekonnen MH, Razanamparany VR, Ramarokoto H, Djonne B, Oloya J, Machado A, Mucavele C, Skjerve E, Portaels F, Rigouts L, Michel A, Muller A, Kallenius G, van Helden PD, Hewinson RG, Zinsstag J, Gordon SV & Smith NH (2009) African 1, an epidemiologically important clonal complex of Mycobacterium bovis dominant in Mali, Nigeria, Cameroon, and Chad. Journal of Bacteriology. 191: 1951-1960

Oshaghi MA, Ravasan NM, Hide M, Javadian EA, Rassi Y, Sadraei J, Mohebali M, Sedaghat MM, Hajjaran H, Zarei Z, Mohtarami F (2009) Phlebotomus perfiliewi transcaucasicus is circulating both Leishmania donovani and L. infantum in northwest Iran. Experimental Parasitology. 123: 218-225 pdf

Oshaghi MA, Ravasan NM, Hide M, Javadian EA, Rassi Y, Sedaghat MM, Mohebali M, Hajjaran H (2009) Development of species-specific PCR and PCR-Restriction Fragment Length Polymorphism assays for L.infantum /L.donovani discrimination. Experimental Parasitology. 122: 61-65 pdf

Philippon S, Broutin H, Constantin de Magny G, Toure K, Diakite CH, Fourquet N, Courel MF, Sultan B & Guégan JF (2009) Meningococcal meningitis in Mali: a long-term study of persistence and spread. International Journal of Infectious Diseases. 13: 103-109 pdf

Pratlong F, Dereure J, Ravel C, Lami P, Balard Y, Serres G, Lanotte G, Rioux JA & Dedet JP (2009) Geographical distribution and epidemiological features of Old World cutaneous leishmaniasis foci, based on the isoenzyme analysis of 1048 strains. Tropical Medicine & International Health. 14: 1071-1085

Rougeron V, de Meeûs T, Hide M, Waleckx E, Bermudez H, Arevalo J, Llanos-Cuentas A, Dujardin JC, de Doncker S, Le Ray D, Ayala FJ & Bañuls AL (2009) Extreme inbreeding in Leishmania braziliensis. Proceedings of the National Academy of Sciences USA. 106: 10224-10229 pdf

Sunder S, Lanotte P, Godreuil S, Martin C, Boschiroli ML & Besnier JM (2009) Human-to-human transmission of tuberculosis caused by Mycobacterium bovis in immunocompetent patients. Journal of Clinical Microbiology. 47: 1249-1251


Alix E, Godreuil S & Blanc-Potard AB (2008) Identification of a haarlem genotype-specific single nucleotide polymorphism in the mgtC virulence gene of Mycobacterium tuberculosis (vol 44, pg 2093, 2006). Journal of Clinical Microbiology. 46: 3183-3183

Brou T, Broutin H, Elguero E, Asse H & Guégan JF (2008) Landscape diversity related to Buruli ulcer disease in Cote d'Ivoire. PLoS Neglected Tropical Diseases. 2: e271 pdf

Constantin de Magny G, Renaud F, Durand P, Guégan JF (2008) Ecology of health: the macroscope as a new tool! In Ecology and Evolution of Parasitized Systems. Eds F Thomas, JF Guègan & F Renaud. pp.129-138 Oxford University Press

Corne P, Bruneel F, Biron-Andreani C & Jonquet O (2008) Purpura fulminans due to imported falciparum malaria. Intensive Care Medicine. 34: 2123-2124

Croce O, Chevenet F & Christen R (2008) OligoHeatMap (OHM): an online tool to estimate and display hybridizations of oligonucleotides onto DNA sequences. Nucleic Acids Research. 36: W154-W156

Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM & Gascuel O (2008) Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Research. 36: W465-W469 [- phylogeny.fr -]

Devault A & Bañuls AL (2008) The promastigote surface antigen gene family of the Leishmania parasite: differential evolution by positive selection and recombination. BMC Evolutionary Biology. 8: 292

Guégan JF & Broutin H (2008) Microbial communities: Patterns and processes. In Biodiversity Change and Human Health: From Ecosystem Services to Spread of Disease. (Eds. Sala O, Meyerson LA & Parmesan C). Island Press-Scope Diversitas, New York, USA. pp193-210

Haouas N, Pesson B, Boudabous R, Dedet JP, Babba H & Ravel C (2008) Development of a molecular tool for the identification of leishmania reservoir hosts by blood meal analysis in the insect vectors. American Journal of Tropical Medicine and Hygiene. 77: 1054-1059

Hide M & Bañuls AL (2008) Polymorphisms of cpb multicopy genes in the Leishmania (Leishmania) donovani complex. Transactions of the Royal Society of Tropical Medicine and Hygiene. 102: 105-106 pdf

Hide M, Ritleng AS, Brisard JP, Monte-Allegre A, & Sereno D (2008) Leishmania infantum: tuning digitonin fractionation for comparative proteomic of the mitochondrial protein content. Parasitology Research. 103: 989-992 pdf

Kallel K, Haouas N, Pratlong F, Kaouech E, Belhadj S, Anane S, Dedet JP, Babba H & Chaker E (2008) Cutaneous leishmaniasis caused by Leishmania infantum MON-24 in Tunisia: extension of the focus to the center of the country. Bulletin de la Société de Pathologie Exotique. 101: 29-31

Lechiche C, Corne P, Bernard F, Reynes J & Jonquet O (2008) Multiple abscesses. Revue de Medecine Interne. 29: 321-322

Morio F, Reynes J, Dollet M, Pratlong F, Dedet JP & Ravel C (2008) Isolation of a protozoan parasite genetically related to the insect trypanosomatid Herpetomonas samuelpessoai from a human immunodeficiency virus-positive patient. Journal of Clinical Microbiology. 46: 3845-3847

Rougeron V, Waleckx E, Hide M, de Meeûs T, Arevalo J, Llanos-Cuentas A & Bañuls AL (2008) A set of 12 microsatellite loci for genetic studies of Leishmania braziliensis. Molecular Ecology Notes. 8: 351-353 pdf

Tavares J, Ouaissi A, Santarem N, Sereno D, Vergnes B, Sampaio P & Cordeiro-da-Silva A (2008) The Leishmania infantum cytosolic SIR2-related protein 1 (LiSIR2RP1) is an NAD+ -dependent deacetylase and ADP-ribosyltransferase. Biochemical Journal. 415: 377-386

Yaka P, Sultan B, Broutin H, Janicot S, Philippon S & Fourquet N (2008) Relationships between climate and year-to-year variability in meningitis outbreaks: a case study in Burkina Faso and Niger. International Journal of Health Geographics. 7: 34 pdf


Adriano MA, Vergnes B, Poncet J, Mathieu-Daudé F, da Silva AC, Ouaissi A & Sereno D (2007) Proof of interaction between Leishmania SIR2RP1 deacetylase and chaperone HSP83. Parasitology Research. 100: 811-818

Bañuls AL, Hide M & Prugnolle F (2007) Leishmania and Leishmaniases: a parasite genetic update and advances in taxonomy, epidemiology and pathogenicity in humans. Advances in Parasitology. 64: 1-109 pdf

Broutin H, Mantilla-Berniers N & Rohani P (2007) Ecology of infectious diseases: an example for two vaccine-preventable diseases. In Encyclopedia of infectious diseases: Modern methodologies. (Ed. Tibayrenc M). Wiley & Sons Ltd., Chichester, USA pdf

Broutin H, Philippon S, Constantin de Magny G, Courel MF, Sultan B & Guégan JF (2007) Comparative study of meningitis dynamics across nine African countries: a global perspective. International Journal of Health Geographics. 6: 29 pdf

Cazelles B, Chavez M, Constantin de Magny G, Guégan JF, Hales S (2007) Time-dependent spectral analysis of epidemiological time-series with wavelets. Journal of the Royal Society Interface. 4: 625-636. pdf

Constantin de Magny G, Guégan JF, Petit M & Cazelles B (2007) Regional-scale climate-variability synchrony of cholera epidemics in West Africa. BMC Infectious Diseases. 7: 20 pdf

Dedet JP (2007) Leishmaniasis: a growing problem due to environmental changes and human behaviours. Bulletin de l Académie Nationale de Médecine. 191: 1579-1587

Dujardin JC, De Doncker S, Jacquet D, Bañuls AL, Balavoine M, Van Bockstaele D, Tibayrenc M, Arevalo J & Le Ray D (2007) Clonal propagation and the fast generation of karyotype diversity: An in vitro Leishmania model. Parasitology. 134: 33-39 pdf

Foulet F, Botterel F, Buffet P, Morizot G, Rivollet D, Deniau M, Pratlong F, Costa JM & Bretagne S (2007) Detection and identification of Leishmania species from clinical specimens by using a real-time PCR assay and sequencing of the cytochrome b gene. Journal of Clinical Microbiology. 45: 2110-2115

Fouque F, Gaborit P, Issaly J, Carinci R, Gantier JC, Ravel C & Dedet JP (2007) Phlebotomine sand floes (Diptera: Psychodidae) associated with changing patterns in the transmission of the human cutaneous leishmaniasis in French Guiana. Memórias do Instituto Oswaldo Cruz. 102: 35-40

Gangneux JP, Sauzet S, Donnard S, Meyer N, Cornillet A, Pratlong F & Guiguen C (2007) Recurrent American cutaneous leishmaniasis. Emerging Infectious Diseases. 13: 1436-1438

Godreuil S, Marchandin H, Boulier A, Boumzebra A, Campos J & Jean-Pierre H (2007) A 6-year study of glycopeptides-resistant enterococci in 3 intensive care units of the University Hospital of Montpellier. Pathologie Biologie. 55: 418-423

Godreuil S, Renaud F, Van de Perre P, Carriere C, Torrea G & Bañuls AL (2007) Genetic diversity and population structure of Mycobacterium tuberculosis in HIV-1-infected compared with uninfected individuals in Burkina Faso. AIDS. 21: 248-250

Godreuil S, Torrea G, Terru D, Chevenet F, Diagbouga S, Supply P, van de Perre P, Carriere C & Bañuls AL (2007) First molecular epidemiology study of Mycobacterium tuberculosis in Burkina Faso. Journal of Clinical Microbiology. 45: 921-927 pdf

Guégan JF & Constantin de Magny G (2007) Epidemiology in a changing world: the need for a bigger picture! In Encyclopedia of infectious diseases: Modern methodologies. Ed. M Tibayrenc. John Wiley & Sons, inc. pp. 569-589 pdf

Guégan JF, Constantin de Magny G, Durand P & Renaud F (2007) Ecologie de la Santé: Le macroscope comme nouvel outil ! In Ecologie et évolution des systèmes parasites (Eds. Thomas F, Renaud F & Guégan JF). De Boeck Université, Paris, France. pdf

Haouas N, Gorcii M, Chargui N, Aoun K, Bouratbine A, akrout MF, Masmoudi A, Zili J, Ben Said M, Pratlong F, Dedet JP & Mezhoud H (2007) Leishmaniasis in central and southern Tunisia: Current geographical distribution of zymodemes. Parasite. 14: 239-246

Haouas N, Pesson B, Boudabous R, Dedet JP, Babba H & Ravel C (2007) Development of a molecular tool for the identification of leishmania reservoir hosts by blood meal analysis in the insect vectors. American Journal of Tropical Medicine and Hygiene. 77: 1054-1059

Haralambous C, Dakkak A, Prationg E, Dedet JP & Soteriadou K (2007) First detection and genetic typing of Leishmania infantum MON-24 in a dog from the Moroccan Mediterranean coast: Genetic diversity of MON-24. Acta Tropica. 103: 69-79

Hide M, Bras-Goncalves R & Bañuls AL (2007) Specific cpb copies within the Leishmania donovani complex: evolutionary interpretations and potential clinical implications in humans. Parasitology. 134: 379-389 pdf

Hide M, Bucheton B, Kamhawi S, Bras-Gonçalves R, Sundar S, Lemesre JL & Bañuls AL (2007) Understanding human leishmaniasis: the need for an integrated approach. In Encyclopedia of infectious diseases: Modern methodologies, Editor M. Tibayrenc. John Wiley & Sons, Inc. pdf

Hide M, Singh R, Kumar B, Bañuls AL & Sundar S (2007) A microculture technique for isolation of Leishmania parasites alive from peripheral blood of visceral leishmaniasis patients. Acta Tropica. 102: 197-200 pdf

Klouche K, Da Mota EF, Durant R, Amigues L, Corne P, Jonquet O & Beraud JJ (2007) Hypothalamic-pituitary-adrenal axis reactivity and dehydroepiandrosterone sulfate plasma concentrations in the critically ill elderly. Age and Ageing. 36: 686-689

Lukes J, Mauricio IL, Schoenian G, Dujardin JC, Soteriadou K, Dedet JP, Kuhls K, Tintaya KWQ, Jirku M, Chocholova E, Haralambous C, Pratlong F, Obornik M, Horak A, Ayala FJ & Miles MA (2007) Evolutionary and geographical history of the Leishmania donovani complex with a revision of current taxonomy. Proceedings of the National Academy of Sciences USA. 104: 9375-9380

Marchandin H, Jumas-Bilak E, Boumzebra A, Vidal D, Jonquet O & Corne P (2007) Fatal Streptococcus equi subsp. ruminatorum infection in a man. Emerging Infectious Diseases. 13: 1964-1966 pdf

Marty P, Izri A, Ozon C, Haas P, Rosenthal E, Del Giudice P, Godenir J, Coulibaly E, Gari-Toussaint M, Delaunay P, Ferrua B, Haas H, Pratlong F & Le Fichoux Y (2007) A century of leishmaniasis in Alpes-Maritimes, France. Annals of Tropical Medicine and Parasitology. 101: 563-574

Morizot G, Delgiudice P, Caumes E, Laffitte E, Marty P, Dupuy A, Sarfati C, Hadj-Rabia S, Darie H, Le Guern A-S, Ben Salah A, Pratlong F, Dedet JP, Grogl M & Buffet PA (2007) Healing of old world cutaneous leishmaniasis in travelers treated with fluconazole: Drug effect or spontaneous evolution? American Journal of Tropical Medicine and Hygiene. 76: 48-52

Silvestre R, Cordeiro da Silva A, Santarem N, Vergnes B, Sereno D & Ouaissi A (2007) SIR2-deficient Leishmania infantum induces a defined IFN-gamma/IL-10 pattern that correlates with protection. Journal of Immunology. 179: 3161-3170

Tazi L, Reintjes R & Bañuls AL (2007) Tuberculosis transmission in a high incidence area: A retrospective molecular epidemiological study of Mycobacterium tuberculosis in Casablanca, Morocco. Infection, Genetics and Evolution. 7: 636-644 pdf

Vergnes B, Gourbal B, Girard I, Sundar S, Drummelsmith J & Ouellette M (2007) A proteomics screen implicates HSP83 and a small kinetoplastid calpain-related protein in drug resistance in Leishmania donovani clinical field isolates by modulating drug-induced programmed cell death. Molecular & Cellular Proteomics. 6: 88-101

Volf P, Benkova I, Myskova J, Sadlova J, Campino L & Ravel C (2007) Increased transmission potential of Leishmania major/Leishmania infantum hybrids. International Journal for Parasitology. 37: 589-593

Zerpa O, Ulrich M, Blanco B, Polegre M, Avila A, Matos N, Mendoza I, Pratlong F, Ravel C & Convit J (2007) Diffuse cutaneous leishmaniasis responds to miltefosine but then relapses. British Journal of Dermatology. 156: 1328-1335


Alix E, Godreuil S, & Blanc-Potard AB (2006) Identification of a Haarlem genotype-specific single nucleotide polymorphism in the mgtC virulence gene of Mycobacterium tuberculosis. Journal of Clinical Microbiology. 44: 2093-2098

Baudot A, Martin D, Mouren P, Chevenet F, Guenoche A, Jacq B & Brun C (2006) PRODISTIN Web Site: a tool for the functional classification of proteins from interaction networks. Bioinformatics. 22: 248-250

Befort P, Corne P, Milhaud D, Segondy M, Landreau L, Jonquet O (2006) Locked-in state due to Epstein-Barr virus primary infection in an immunocompetent patient. Intensive Care Medicine. 32:1672-1673

Biron DG, Brun C, Lefèvre T, Lebarbenchon C, Loxdale HD, Chevenet F, Brizard JP & Thomas F (2006) The pitfalls of proteomics experiments without the correct use of bioinformatics tools. Proteomics. 6: 5577-5596 pdf

Brou TY, Broutin H, Dosso M & Guégan JF (2006) Impact des modifications d'habitats (déforestation, aménagements hydro-agricoles, extension des cultures) sur la santé des populations rurales : cas de l'ulcère de Buruli en Côte d'Ivoire.Proceedings of the Fifth FRIEND World Conference held at La Havana, Cuba, November 2006, IAHS Publ. 308: 685-690. pdf

Broutin H, Tarrieu F, Tibayrenc M, Oury B, Barnabé C (2006) Phylogenetic analysis of the glucose-6-phosphate isomerase gene in Trypanosoma cruzi. Experimental Parasitology. 113: 1-7 pdf

Campino L, Pratlong F, Abranches P, Rioux JA, Santos-Gomes G, Alves-Pires C, Cortes S, Ramada J, Cristovao JM, Afonso MO & Dedet JP (2006) Leishmaniasis in Portugal: enzyme polymorphism of Leishmania infantum based on the identification of 213 strains. Tropical Medicine & International Health. 11: 1708-1714

Chevenet F, Brun C, Bañuls AL, Jacq B & Christen R (2006) TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics. 7: 439 pdf

Constantin de Magny G, Cazelles B & Guégan JF (2006) Cholera threat to humans in Ghana is influenced by both global and regional climatic variability. Ecohealth. 3: 223-231 pdf

Constantin de Magny G, Guégan JF, Petit M & Cazelles B (2006) Regional-scale synchrony of cholera epidemics in western Africa with climate variability. Epidemiology. 17: S207-S207

Cortes S, Mauricio I, Almeida A, Cristovao JM, Pratlong F, Dedet JP & Campino L (2006) Application of kDNA as a molecular marker to analyse Leishmania infantum diversity in Portugal. Parasitology International. 55: 277-283

El-Safi S, Kheir MM, Bucheton B, Argiro L, Abel L, Dereure J, Dedet JP & Dessein A (2006) Genes and environment in susceptibility to visceral leishmaniasis. Comptes Rendus Biologies. 329: 863-870

Fournier-Wirth C, Deschaseaux M, Defer C, Godreuil S, Carriere C, Bertrand X, Tunez V, Schneider T, Coste J & Morel P (2006) Evaluation of the enhanced bacterial detection system for screening of contaminated platelets. Transfusion. 46: 220-224

Godreuil S, Marchandin H, Terru D, Le Moing V, Chammas M, Vincent V, Jumas-Bilak E, Van De Perre P & Carriere C (2006) Mycobacterium heckeshornense tenosynovitis. Scandinavian Journal of Infectious Diseases. 38: 1098-1101

Hide M & AL Bañuls (2006) Species-specific PCR assay for L. infantum/L. donovani discrimination. Acta Tropica. 100: 241-245 pdf

Holzmuller P, Hide M, Sereno D, & Lemesre JL (2006) Leishmania infantum amastigotes resistant to nitric oxide cytotoxicity: Impact on in vitro parasite developmental cycle and metabolic enzyme activities. Infection, Genetics and Evolution. 6: 187-197 pdf

Mauricio IL, Yeo M, Baghaei M, Doto D, Pratlong F, Zemanova E, Dedet JP, Lukes J & Miles MA (2006) Towards multilocus sequence typing of the Leishmania donovani complex: Resolving genotypes and haplotypes for five polymorphic metabolic enzymes (ASAT, GPI, NH1, NH2, PGD). International Journal for Parasitology. 36: 757-769

Ngouanesavanh T, Guyot K, Certad G, Le Fichoux Y, Chartier C, Verdier RI, Cailliez JC, Camus D, Dei-Cas E & Bañuls AL (2006) Cryptosporidium population genetics: evidence of clonality in isolates from France and Haiti. Journal of Eukaryotic Microbiology. 53: S33-S36

Ravel C, Cortes S, Pratlong F, Morio F, Dedet JP & Campino L (2006) First report of genetic hybrids between two very divergent Leishmania species: Leishmania infantum and Leishmania major. International Journal for Parasitology. 36: 1383-1388

Rotureau B, Ravel C, Aznar C, Carme B & Dedet JP (2006) First report of Leishmania infantum in French Guiana: Canine visceral leishmaniasis imported from the old world. Journal of Clinical Microbiology. 44: 1120-1122

Rotureau B, Ravel C, Couppie P, Pratlong F, Nacher M, Dedet JP & Carme B (2006) Use of PCR-restriction fragment length polymorphism analysis to identify the main new world Leishmania species and analyze their taxonomic properties and polymorphism by application of the assay to clinical samples. Journal of Clinical Microbiology. 44: 459-467

Rotureau B, Ravel C, Nacher M, Couppie P, Curtet I, Dedet JP & Carme B (2006) Molecular epidemiology of Leishmania (Viannia) guyanensis in French Guiana. Journal of Clinical Microbiology. 44: 468-473

Schwenkenbecher JM, Wirth T, Schnur LF, Jaffe CL, Schallig H, Al-Jawabreh A, Hamarsheh O, Azmi K, Pratlong F & Schonian G (2006) Microsatellite analysis reveals genetic structure of Leishmania tropica. International Journal for Parasitology. 36: 237-246

Sereno D, Vergnes B, Mathieu-Daudé F, Cordeiro da Silva A & Ouaissi A (2006) Looking for putative functions of the Leishmania cytosolic SIR2 deacetylase. Parasitology Research. 100: 1-9


Bader KA, Schnur LF, Nasereddin A, Pratlong F, Dedet JP, Shaheen L, Yousef O & Greenblatt CL (2005) Short Communication: Palestinian infantile visceral leishmaniasis caused by a genetic variant of Leishmania infantum belonging to a new zymodeme. Tropical Medicine & International Health. 10: 618-620

Basset D, Faraut F, Marty P, Dereure J, Rosenthal E, Mary C, Pratlong F, Lachaud L, Bastien P & Dedet JP (2005) Visceral leishmaniasis in organ transplant recipients: 11 new cases and a review of the literature. Microbes and Infection. 7: 1370-1375

Borges M, Cordeiro-da-Silva A, Vergnes B, Sereno D & Ouaissi A (2005) Conversion of Trypanosoma cruzi Tc52 released factor to a protein inducing apoptosis. Tissue Cell. 37: 469-478

Broutin H, Guégan JF, Elguero E, Simondon F & Cazelles B (2005) Large-scale comparative analysis of pertussis population dynamics: periodicity, synchrony, and impact of vaccination. American Journal of Epidemiology. 161: 1159-1167 pdf

Broutin H, Mantilla-Beniers N, Simondon F, Aaby P, Grenfell BT, Guégan JF & Rohani P (2005) Epidemiological impact of vaccination on the dynamics of two childhood diseases in rural Senegal. Microbes and Infection. 7: 593-599 pdf

Campino L, Bajanca R, Franca I, Pratlong F, Dedet J & Fiadeiro T (2005) Cutaneous leishmaniosis in Portugal due to Leishmania infantum MON-1. Acta medica portuguesa. 18: 475-477

Carriere C, Godreuil S, Gouby A, Vincent V, Marchandin H, Terru D, Delaporte E, Sorokaty JM, Jumas-Bilak E & Van de Perre P (2005) Mycobacterium simiae infections: about two cases. Pathologie Biologie. 53: 324-327

Constantin de Magny G, Paroissin C, Cazelles B, de Lara M, Delmas JF & Guégan JF (2005) Modeling environmental impacts of plankton reservoirs on cholera population dynamics. In ESAIM Proceedings 14: 156-173 pdf

Corne P, Godreuil S, Jean-Pierre H, Jonquet O, Campos J, Jumas-Bilak E, Parer S & Marchandin H (2005) Unusual implication of biopsy forceps in outbreaks of Pseudomonas aeruginosa infections and pseudo-infections related to bronchoscopy. Journal of Hospital Infection. 61: 20-26

Corne P, Grieu T & Jonquet O (2005) Streptococcus pyogenes and Mycoplasma pneumoniae: Pulmonary coinfection or serologic artetact? Presse Medicale. 34: 801-802

Corne P, Marchandin H, Jonquet O, Campos J & Bañuls AL (2005) Molecular evidence that nasal carriage of Staphylococcus aureus plays a role in respiratory tract infections of critically ill patients. Journal of Clinical Microbiology. 43: 3491-3493 pdf

Corne P, Marchandin H, Macia JC, Jonquet O (2005) Treatment failure of methicillin-resistant Staphylococcus aureus endocarditis with linezolid. Scandinavian Journal of Infectious Diseases. 37: 946-949

Garcia AL, Kindt A, Quispe-Tintaya KW, Bermudez H, Llanos A, Arevalo J, Bañuls AL, De Doncker S, Le Ray D & Dujardin JC (2005) American tegumentary leishmaniasis: antigen-gene polymorphism, taxonomy and clinical pleomorphism. Infection, Genetics and Evolution. 5: 109-116 pdf

Garin YJF, Meneceur P, Pratlong F, Dedet JP, Derouin F & Lorenzo F (2005) A2 gene of Old World cutaneous Leishmania is a single highly conserved functional gene. BMC Infectious Diseases. 5:

Godreuil S, Cohan F, Shah H & Tibayrenc M (2005) Which species concept for pathogenic bacteria? An E-Debate. Infection, Genetics and Evolution. 5: 375-387

Godreuil S, Jean-Pierre H, Morel J, Darbas H, Jumas-Bilak E, Bañuls AL & Marchandin H (2005) Unusual case of spondylodiscitis due to Staphylococcus saccharolyticus. Joint Bone Spine. 72: 91-93 pdf

Grevot A, Jaussaud HP, Marty P, Pratlong F, Ozon C, Haas P, Breton C & Bourdoiseau G (2005) Leishmaniosis due to Leishmania infantum in a FIV and FelV positive cat with a squamous cell carcinoma diagnosed with histological, serological and isoenzymatic methods. Parasite. 12: 271-275

Haouas N, Chargui N, Chaker E, Ben Said M, Babba H, Belhadj S, Kallel K, Pratlong F, Dedet JP, Mezhoud H & Azaiez R (2005) Anthroponotic cutaneous leishmaniasis in Tunisia: Presence of Leishmania killicki outside its original focus of Tataouine. Transactions of the Royal Society of Tropical Medicine and Hygiene. 99: 499-501

Kallel K, Pratlong F, Belhadj S, Cherif F, Hammami M, Dedet JP & Chaker E (2005) Cutaneous leishmaniasis in Tunisia: results of the iso-enzymatic characterization of 71 strains. Annals of Tropical Medicine and Parasitology. 99: 11-19

Kuhls K, Mauricio IL, Pratlong F, Presber W & Schonian G (2005) Analysis of ribosomal DNA internal transcribed spacer sequences of the Leishmania donovani complex. Microbes and Infection. 7: 1224-1234

Lechiche C, Corne P, Severac A, Nogues L & Jonquet O (2005) Concomitant discovery of non Hodgkin's lymphoma and bone tuberculosis. Revue de Medecine Interne. 26: 762-763

Pratlong F, Debord T, Garnotel E, Garrabe E, Marty P, Raphenon G & Dedet JP (2005) First identification of the causative agent of visceral leishmaniasis in Djibouti: Leishmania donovani. Annals of Tropical Medicine and Parasitology. 99: 21-25

Quispe-Tintaya KW, Laurent T, Decuypere S, Hide M, Bañuls AL, De Doncker S, Rijal S, Canavate C, Campino L & Dujardin JC (2005) Fluorogenic Assay for Molecular Typing of the Leishmania donovani Complex: Taxonomic and Clinical Applications. Journal of Infectious Diseases. 192: 685-692 pdf

Sereno D, Alegre AM, Silvestre R, Vergnes B & Ouaissi A (2005) In vitro antileishmanial activity of nicotinamide. Antimicrobial Agents and Chemotherapy. 49: 808-812

Sereno D, Vanhille L, Vergnes B, Monte-Allegre A & Ouaissi A (2005) Experimental study of the function of the excreted/secreted Leishmania LmSIR2 protein by heterologous expression in eukaryotic cell line. Kinetoplastid Biology and Disease. 4: 1

Simon O, Chevenet F, Williams T, Caballero P & Lopez-Ferber M (2005) Physical and partial genetic map of Spodoptera frugiperda nucleopolyhedrovirus (SfMNPV) genome. Virus Genes. 30: 403-417

Thibault L, Corne P, Lechiche C, Sabatier P & Jonquet O (2005) A very purulent lumbar puncture. Revue de Medecine Interne. 26: 594-595

Vergnes B, Sereno D, Tavares J, Cordeiro-da-Silva A, Vanhille L, Madjidian-Sereno N, Depoix D, Monte-Alegre A & Ouaissi A (2005) Targeted disruption of cytosolic SIR2 deacetylase discloses its essential role in Leishmania survival and proliferation. Gene. 363: 85-96

Vergnes B, Vanhille L, Ouaissi A & Sereno D (2005) Stage-specific antileishmanial activity of an inhibitor of SIR2 histone deacetylase. Acta Tropica. 94: 107-115

Villarreal D, Nirde P, Hide M, Barnabé C & Tibayrenc M (2005) Differential gene expression in benznidazole-resistant Trypanosoma cruzi parasites. Antimicrobial Agents and Chemotherapy. 49: 2701-2709 pdf