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Biodiversité des Systèmes Infectieux : du Gène à l'Ecosystème

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Axe: "Etude intégrée des dynamiques de transmission et Contrôle"

 

Coordonnateur: Hélène BROUTIN

 

L’objectif de ce groupe est d’étudier les déterminants génétiques, environnementaux, populationnels et sociétaux de la dynamique spatiale et temporelle des maladies infectieuses, ainsi que leur évolution pour aider à améliorer les stratégies de contrôle.

Les projets qui s’intéressent à différentes échelles spatiales (i.e. du local au global) et temporelles (à court terme, historique), associent les études de terrain, l’analyse en laboratoire, et l’analyse statistiques de données et impliquent des collaborations avec les climatologues, médecins, acteurs de santé publique et anthropologues.

Nous travaillons principalement en Afrique et en Asie, mais aussi à l’échelle internationale (approche comparative) car même si les incidences les plus élevées pour les maladies que nous étudions sont observées en Afrique et/ou Asie (e.g. méningite, tuberculose), il est essentiel de comprendre et tenter d’expliquer ces différences entre pays du Nord et pays du Sud, cela peut avoir des implications sur les stratégies de contrôle.   

Membres de l'équipe

Etudiant:

Léon A NDIAYE : Master 2, UCAD. « Ecologie des infections respiratoires aigues en zone rurale au Sénégal : Etiologie et lien avec la variabilité environnementale. » Encadrants : Roger TINE (UCAD) et Hélène BROUTIN (MIVEGEC/UCAD). 2015.

Publications 'MiVEGEC' par membres de l'équipe depuis 2005 :

| 2005 | | 2006 | | 2007 | | 2008 | | 2009 | | 2010 | | 2011 | | 2012 | | 2013 | | 2014 | | 2015 | | 2016 | | 2017 | | 2018 | | 2019 |

2019

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Mahamat OO, Lounnas M, Hide M, Dumont Y, Tidjani A, Kamougam K, Abderrahmane M, Benavides J, Solassol J, Bañuls AL, Jean-Pierre H, Carriere C, Godreuil S (2019) High prevalence and characterization of extended-spectrum beta-lactamase producing Enterobacteriaceae in Chadian hospitals. BMC Infectious Diseases 19: 205 doi

2018

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Aberkane S, Pradel B, Dumont Y, Veloo ACM, Laurens C, Bonzon L, Godreuil S, Marchandin H, Jean-Pierre H (2018) Clinical sources and antimicrobial susceptibility of Prevotella timonensis at the university hospital of Montpellier, France. Anaerobe 50: 19-21 doi

Bañuls AL, Nguyen TVA, Nguyen QH, Nguyen TNA, Tran HH, Godreuil S (2018) Antimicrobial resistance: the 70-year arms race between humans and bacteria. In, Ecology and Evolution of Infectious Diseases in low-income countries: Pathogen Control and Public Health Management in Low-Income Countries. Roche B, Broutin H & Simard F (Eds.) Oxford University Press, New York. pp 77-90

Bañuls AL, Panteix G, Godreuil S (2018) Les mycobactéries tuberculeuses. Précis de Bactériologie Clinique 3ème édition. Eska and Lacassagne, Paris. pp 1744

Baranovsky S, Romano-Bertrand S, Dumont Y, Masnou A, Hammer F, Godreuil S, Parer S, Jumas-Bilak E (2018) Tracking carbapenemase-producing bacteria by molecular typing: population diversity and sampling pitfall. Infection, Genetics and Evolution 65: 104-106 doi

Benavides JA, Shiva C, Virhuez M, Tello C, Appelgren A, Vendrell J, Solassol J, Godreuil S, Streicker DG (2018) Extended-spectrum beta-lactamase-producing Escherichia coli in common vampire bats Desmodus rotundus and livestock in Peru. Zoonoses and Public Health 65: 454-458 doi

Bouam A, Levasseur A, Bonnet M, Borand L, Van Goethem C, Drancourt M, Godreuil S (2018) Complete genome sequence of Mycobacterium sp. strain 3519a. Microbiology Resource Announcements 6: UNSP e01565-17 doi

Bouam A, Levasseur A, Bonnet M, Borand L, Van Goethem C, Drancourt M, Godreuil S (2018) Complete genome sequence of Mycobacterium sp. strain 4858. Microbiology Resource Announcements 6: UNSP e01604-17 doi

Caimmi D, Martocq N, Trioleyre D, Guinet C, Godreuil S, Daniel T, Chiron R (2018) Positive effect of liposomal amikacin for inhalation on Mycobacterium abcessus in cystic fibrosis patients. Open Forum Infectious Diseases 5: UNSP ofy034 doi

Dumont Y, Lounnas M, Carrière C, Solassol J, Bañuls A.-L, Godreuil S (2018) La tuberculose bovine : une maladie globalisée à l’interface homme-animal. Revue Francophone des Laboratoires 503: 28-33 doi

Godreuil S, Marcy O, Wobudeya E, Bonnet M, Solassol J (2018) Tackling mortality due to childhood tuberculosis. Lancet Public Health 3: E165-E165 doi

Kabore OD, Loukil A, Godreuil S, Drancourt M (2018) Co-culture models illustrate the digestion of Gemmata spp. by phagocytes. Scientific Reports 8: 13311 doi

Kolia-Diafouka P, Godreuil S, Bourdin A, Carrere-Kremer S, Kremer L, Van de Perre P, Tuaillon E (2018) Optimized lysis-extraction method combined with IS6110-amplification for detection of Mycobacterium tuberculosis in paucibacillary sputum specimens. Frontiers in Microbiology 9: 2224 doi

Laurens C, Jean-Pierre H, Licznar-Fajardo P, Hantova S, Godreuil S, Martinez O, Jumas-Bilak E (2018) Transmission of IMI-2 carbapenemase-producing Enterobacteriaceae from river water to human. Journal of Global Antimicrobial Resistance 15: 88-92 doi

Miguel E, Fournet F, Yerbanga S, Moiroux N, Yao F, Vergne T, Cazelles B, Dabiré RK, Simard F, Roche B (2018) Optimizing public health strategies in low-income countries: epidemiology, ecology and evolution for the control of malaria. In, Ecology and evolution of infectious diseases: Pathogen control and public health management in low-income countries. Roche B, Broutin H & Simard F. (Eds.) Oxford University Press, Oxford.

Panteix G, Bañuls AL, Godreuil S (2018) Les mycobactéries non tuberculeuses. Précis de Bactériologie Clinique 3ème édition. Eska and Lacassagne, Paris. pp 1744

Renier W, Bourdin A, Rubbo PA, Peries M, Dedieu L, Bendriss S, Kremer L, Canaan S, Terru D, Godreuil S, Nagot N, Van de Perre P, Tuaillon E (2018) B cells response directed against Cut4 and CFP21 lipolytic enzymes in active and latent tuberculosis infections. PLoS One 13: e0196470 doi

Roche B, Broutin H & Simard F (2018) Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. Oxford University Press, New York. Pp. 322

Roche B, Broutin H & Simard F (2018) Optimizing public health strategies in low-income countries: The challenge to apply the scientific knowledge and for which disease? In, Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. Roche B, Broutin H & Simard F (Eds.) Oxford University Press, New York. pp 309-320

Sanhueza D, Chevillon C, Bouzinbi N, Godreuil S, Guégan JF (2018) Chitin increases Mycobacterium ulcerans growth in acidic environments. Microbes and Environments 33: 234-237 doi

Tine RC, Ndiaye LA, Niang MN, Kiori DE, Dia N, Gaye O, Broutin H (2018) Upper respiratory infections in a rural area with reduced malaria transmission in Senegal: a pathogens community study. BMC Infectious Diseases 18: 459 doi

Viboud C, Broutin H & Chowell G (2018) Spatial-temporal transmission dynamics and control of infectious diseases: Ebola virus disease (EVD) as a case study. In, Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. Roche B, Broutin H & Simard F (Eds.) Oxford University Press, New York.

2017

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Aberkane S, Compain F, Decre D, Pantel A, Vittecoq M, Solassol J, Bouzinbi N, Jean-Pierre H, Godreuil S (2017) Persistence of blaCMY-2-producing Proteus mirabilis in two gull colonies at a 1-year interval in southern France. Journal of Global Antimicrobial Resistance 9: 138-140 doi

Aberkane S, Didelot MN, Carriere C, Laurens C, Sanou S, Godreuil S, Jean-Pierre H (2017) Weissella confusa bacteremia: an underestimated opportunistic pathogen. Medecine Et Maladies Infectieuses 47: 297-299 doi

Agier L, Martiny N, Thiongane O, Mueller JE, Paireau J, Watkins ER, Irving TJ, Koutangni T, Broutin H (2017) Towards understanding the epidemiology of Neisseria meningitidis in the African meningitis belt: a multi-disciplinary overview. International Journal of Infectious Diseases 54: 103-112 doi

Appelgren A, Morquin D, Dufour S, Le Moing V, Reynes J, Lotthe A, Parer S, Corbeau C, Aubry A, Sougakoff W, Solassol J, Bonzon L, Dumont Y, Godreuil S (2017) Investigation of pre-XDR beijing Mycobacterium tuberculosis transmission to a healthcare worker in France, 2016. Journal of Hospital Infection 97: 414-417 doi

Bañuls AL, Panteix G, Godreuil S (2017) Les mycobactéries tuberculeuses. In, Actualités Permanentes en Microbiologie Clinique. Ed. Freney J. Eska. Series Actinomycètes et Mycobactèries VI:3. Eska

Bonnet M, San KC, Pho Y, Sok C, Dousset JP, Brant W, Hurtado N, Eam KK, Ardizzoni E, Heng SH, Godreuil S, Yew WW, Hewison C (2017) Nontuberculous mycobacteria infections at a provincial reference hospital, Cambodia. Emerging Infectious Diseases 23: 1139-1147 doi

Ouedraogo AS, Pierre HJ, Bañuls AL, Ouedraogo R, Godreuil S (2017) Emergence and spread of antibiotic resistance in West Africa: contributing factors and threat assessment. Médecine Et Santé Tropicales 27: 147-154 doi

Ouedraogo AS, Sanou S, Kissou A, Poda A, Aberkane S, Bouzinbi N, Nacro B, Ouedraogo R, Van De Perre P, Carriere C, Decre D, Jean-Pierre H, Godreuil S (2017) Fecal carriage of Enterobacteriaceae producing extended-spectrum beta-lactamases in hospitalized patients and healthy community volunteers in Burkina Faso. Microbial Drug Resistance 23: 63-70 doi

Panteix G, Bañuls AL, Godreuil S (2017) Les mycobactéries non tuberculeuses. In, Actualités Permanentes en Microbiologie Clinique. Ed. Freney J. Eska. Series Actinomycètes et Mycobactèries VI:4. Eska

Vittecoq M, Laurens C, Brazier L, Durand P, Elguero E, Arnal A, Thomas F, Aberkane S, Renaud N, Prugnolle F, Solassol J, Jean-Pierre H, Godreuil S, Renaud F (2017) VIM-1 carbapenemase-producing Escherichia coli in gulls from southern France. Ecology and Evolution 7: 1224-1232 doi

2016

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Aberkane S, Compain F, Decre D, Dupont C, Laurens C, Vittecoq M, Pantel A, Solassol J, Carriere C, Renaud F, Brieu N, Lavigne JP, Bouzinbi N, Ouedraogo AS, Jean-Pierre H, Godreuil S (2016) High prevalence of SXT/R391-related integrative and conjugative elements carrying bla(CMY-2) in Proteus mirabilis isolates from gulls in the South of France. Antimicrobial Agents and Chemotherapy 60: 1148-1152 doi

Chazel M, Marchandin H, Keck N, Terru D, Carriere C, Ponsoda M, Jacomo V, Panteix G, Bouzinbi N, Bañuls AL, Choisy M, Solassol J, Aubry A, Godreuil S (2016) Evaluation of the SLOMYCO sensititre (R) panel for testing the antimicrobial susceptibility of Mycobacterium marinum isolates. Annals of Clinical Microbiology and Antimicrobials 15: 30 doi

Dupont C, Terru D, Aguilhon S, Frapier JM, Paquis MP, Morquin D, Lamy B, Godreuil S, Parer S, Lotthe A, Jumas-Bilak E, Romano-Bertrand S (2016) Source-case investigation of Mycobacterium wolinskyi cardiac surgical site infection. Journal of Hospital Infection 93: 235-239 doi

Marcy O, Ung V, Goyet S, Borand L, Msellati P, Tejiokem M, Thi NLN, Nacro B, Cheng S, Eyangoh S, Pham TH, Ouedraogo AS, Tarantola A, Godreuil S, Blanche S, Delacourt C, Grp Paanther Study (2016) Performance of Xpert MTB/RIF and alternative specimen collection methods for the diagnosis of tuberculosis in HIV-infected children. Clinical Infectious Diseases 62: 1161-1168 doi

Ouedraogo AS, Compain F, Sanou M, Aberkane S, Bouzinbi N, Hide M, Sangare L, Ouedraogo-Traore R, Jean-Pierre H, Vendrell J, Solassol J, Decre D, Godreuil S (2016) First description of IncX3 plasmids carrying bla(oxa-181) in Escherichia coli clinical isolates in Burkina Faso. Antimicrobial Agents and Chemotherapy 60: 3240-3242 doi

Ouedraogo AS, Dunyach-Remy C, Kissou A, Sanou S, Poda A, Kyelem CG, Solassol J, Bañuls AL, Van de Perre P, Ouedraogo R, Jean-Pierre H, Lavigne JP, Godreuil S (2016) High nasal carriage rate of Staphylococcus aureus containing Panton-Valentine leukocidin- and EDIN-encoding genes in community and hospital settings in Burkina Faso. Frontiers in Microbiology 7: 1406 doi

Ouedraogo AS, Sanou M, Kissou A, Sanou S, Solare H, Kabore F, Poda A, Aberkane S, Bouzinbi N, Sano I, Nacro B, Sangare L, Carriere C, Decre D, Ouegraogo R, Jean-Pierre H, Godreuil S (2016) High prevalence of extended-spectrum beta-lactamase producing Enterobacteriaceae among clinical isolates in Burkina Faso. BMC Infectious Diseases 16: 326 doi

Paireau J, Chen A, Broutin H, Grenfell B, Basta NE (2016) Seasonal dynamics of bacterial meningitis: a time-series analysis. Lancet Global Health 4: E370-E377 doi

Vittecoq M, Godreuil S, Prugnolle F, Durand P, Brazier L, Renaud N, Arnal A, Aberkane S, Jean-Pierre H, Gauthier-Clerc M, Thomas F, Renaud F (2016) Antimicrobial resistance in wildlife. Journal of Applied Ecology 53: 519-529 doi

2015

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Aberkane S, Compain F, Barraud O, Ouedraogo AS, Bouzinbi N, Vittecoq M, Jean-Pierre H, Decre D, Godreuil S (2015) Non-01/Non-0139 Vibrio cholerae avian isolate from France cocarrying the bla(VIM-1) and bla(VIM-4) genes. Antimicrobial Agents and Chemotherapy 59: 6594-6596 doi

Bañuls AL, Sanou A, Anh NTV, Godreuil S (2015) Mycobacterium tuberculosis: ecology and evolution of a human bacterium. Journal of Medical Microbiology 64: 1261-1269 doi

Bañuls AL, Sanou A, Godreuil S (2015) Mycobacterium tuberculosis : écologie et évolution d’une bactérie humaine. In Maladies Infectieuses. pp 79-102. Eds. M Vittecoq, B Roche, F Prugnolle, F Renaud & F Thomas. de Boeck Solal, Paris

Bañuls AL, Sanou A, Godreuil S (2015) Mycobacterium tuberculosis a fully human bacterium. Biofutur. 361:36-37

Bourgoin A, Karabetsos A, Ouedraogo AS, Aberkan S, Bouzinbi N, Jean-Pierre H, Godreuil S (2015) Intrafamilial transmission of pulmonary tuberculosis due to Mycobacterium bovis. Medecine Et Maladies Infectieuses 45: 394-396 doi

Hauer A, De Cruz K, Cochard T, Godreuil S, Karoui C, Henault S, Bulach T, Bañuls AL, Biet F, Boschiroli ML (2015) Genetic evolution of Mycobacterium bovis causing tuberculosis in livestock and wildlife in France since 1978. PLoS One. 10: e0117103 doi

Lima M, Estay SA, Fuentes R, Rubilar P, Broutin H, Chowell-Puente G (2015) Whooping cough dynamics in Chile (1932-2010): disease temporal fluctuations across a north-south gradient. BMC Infectious Diseases 15: 590 doi

Massanet PL, Petit L, Louart B, Corne P, Richard C, Preiser, JC (2015) Nutrition rehabilitation in the intensive care unit. Journal of Parenteral and Enteral Nutrition. 39: 391-400 doi

Rodriguez-Nava V, Durupt S, Chyderiotis S, Freydiere AM, Karsenty J, de Montclos M, Reix P, Durieu I, Nove-Josserand R, Chiron R, Bremont F, Tetu L, Murris M, Terru D, Godreuil S, Bergeron E, Freney J, Boiron P, Vandenesch F, Marchandin H, Segonds C, Doleans-Jordheim A (2015) A French multicentric study and review of pulmonary Nocardia spp. in cystic fibrosis patients. Medical Microbiology and Immunology 204: 493-504 doi

Rondy M, Launay O, Puig-Barbera J, Gefenaite G, Castilla J, Donati KD, Galtier F, Hak E, Guevara M, Costanzo S, Moren A, European Hospital IVE Network [dont Corne P] (2015) 2012/13 influenza vaccine effectiveness against hospitalised influenza A(H1N1)PDM09, A(H3N2) and B: estimates from a european network of hospitals. Eurosurveillance 20: 9-20 Unsp 21011 doi

2014

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Brunel AS, Bañuls AL, Marchandin H, Bouzinbi N, Morquin D, Jumas-Bilak E & Corne P (2014) Methicillin-sensitive Staphylococcus aureus CC398 in intensive care unit, France. Emerging Infectious Diseases. 20: 1511-1515 doi

Combes N, Jaffuel D, Cayla G, Granier M, Borel JC, Corne P, Jonquet O, Jaber S, Davy JM & Pepin JL (2014) Pressure-dependent hemodynamic effect of continuous positive airway pressure in severe chronic heart failure: A case series. International Journal of Cardiology. 171: E104-E105 doi

Godreuil S, Leban N, Padilla A, Hamel R, Luplertlop N, Chauffour A, Vittecoq M, Hoh F, Thomas F, Sougakoff W, Lionne C, Yssel H & Missé D (2014) Aedesin: structure and antimicrobial activity against multidrug resistant bacterial strains. PLoS One. 9: e105441 doi

Laurens C, Hery-Arnaud G, Chiron R, Oziol E, Jean-Pierre H, Bouzinbi N, Perre PV, Bañuls AL & Godreuil S (2014) Sacroiliitis secondary to catheter-related bacteremia due to Mycobacterium abscessus (sensu stricto). Annals of Clinical Microbiology and Antimicrobials. 13: 9 doi

Massanet P, Jung B, Molinari N, Villiet M, Moulaire V, Roch-Torreilles I, Jaber S, Reynes J & Corne P (2014) Antifungal treatment for suspected or proved candidiasis in the critically ill. Annales Francaises d Anesthesie et de Reanimation. 33: 232-239 doi

Roche B, Broutin H, Choisy M, Godreuil S, Constantin de Magny G, Chevaleyre Y, Zucker JD, Breban R, Cazelles B & Simard F (2014) The niche reduction approach: an opportunity for optimal control of infectious diseases in low-income countries? BMC Public Health. 14: 753 doi

Sanou A, Tarnagda Z, Kanyala E, Zingue D, Nouctara M, Ganamé Z, Combary A, Hien H, Dembele M, Kabore A, Meda N, Van de Perre P, Neveu D, Bañuls AL & Godreuil S (2014) Mycobacterium bovis in Burkina Faso: epidemiologic and genetic links between human and cattle isolates. PLoS Neglected Tropical Diseases. 8: e3142 doi

Singh S, Bouzinbi N, Chaturvedi V, Godreuil S & Kremer L (2014) In vitro evaluation of a new drug combination against clinical isolates belonging to the Mycobacterium abscessus complex. Clinical Microbiology and Infection. 20: O1124-O1127 doi

2013

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Agier L, Broutin H, Bertherat E, Djingarey MH, Lingani C, Perea W & Hugonnet S (2013) Timely detection of bacterial meningitis epidemics at district level: a study in three countries of the African Meningitis Belt. Transactions of the Royal Society of Tropical Medicine and Hygiene. 107: 30-36

Agier L, Deroubaix A, Martiny N, Yaka P, Djibo A & Broutin H (2013) Seasonality of meningitis in Africa and climate forcing: aerosols stand out. Journal of the Royal Society Interface. 10: 20120814 doi

Befort P, Corne P, Filleron T, Jung B, Bengler C, Jonquet O & Klouche K (2013) Prognosis and ICU outcome of systemic vasculitis. BMC Anesthesiology. 13: 27 doi

Blackwood JC, Cummings DAT, Broutin H, Iamsirithaworn S & Rohani P (2013) Deciphering the impacts of vaccination and immunity on pertussis epidemiology in Thailand. Proceedings of the National Academy of Sciences USA. 110: 9595-9600 doi

Gomis PF, Jean-Pierre H, Rousseau-Didelot MN, Compan B, Michon AL & Godreuil S (2013) Tigecycline: CMI 50/90 towards 1766 Gram-negative bacilli (3rd generation cephalosporins resistant enterobacteriaceae), Acinetobacter baumannii and Bacteroides fragilis group, University Hospital - Montpellier, 2008-2011. Pathologie Biologie. 61: 282-285 doi

Hong DN, Huyen MNT, Lan NTN, Duong NH, Ngo VVN, Ngoc DT, Huu KT, Nguyen T, Do Chau V, Marcy O, Van de Perre P, Bañuls AL & Godreuil S (2013) Rifampin-resistant Mycobacterium bovis BCG-induced disease in HIV-infected infant, Vietnam. Emerging Infectious Diseases. 19: 1168-1170 doi

Phung TN, Caruso D, Godreuil S, Keck N, Vallaeys T & Avarre JC (2013) Rapid detection and identification of nontuberculous mycobacterial pathogens in fish by using high-resolution melting analysis. Applied and Environmental Microbiology. 79: 7837-7845 doi

Zingue D, Hien H, Meda N, Zida S, Kabore A, Sanou A, Ouedraogo AS, Gomgnimbou M, Diande S, Tarnagda Z & Godreuil S (2013) Advantages and drawbacks of expectoration decontamination methods for tuberculosis and anti-tuberculosis drug resistance diagnosis. Annales de Biologie Clinique. 71: 283-291 doi

2012

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Al-Tam F, Brunel AS, Bouzinbi N, Corne P, Bañuls AL & Shahbazkia HR (2012) DNAGear- a free software for spa type identification in Staphylococcus aureus. BMC Research Notes. 5: 642-642 doi

Befort P, Corne P, Godreuil S, Jung B & Jonquet O (2012) Clinical review of eight patients with acute respiratory distress syndrome due to pulmonary tuberculosis. Scandinavian Journal of Infectious Diseases. 44: 222-224 doi

Benavides JA, Godreuil S, Bodenham R, Ratiarison S, Devos C, Petretto MO, Raymond M & Escobar-Paramo P (2012) No evidence for transmission of antibiotic-resistant Escherichia coli strains from humans to wild western lowland gorillas in Lope National Park, Gabon. Applied and Environmental Microbiology. 78: 4281-4287 doi

Bharti N, Broutin H, Grais RF, Ferrari MJ, Djibo A, Tatem AJ & Grenfell BT (2012) Spatial dynamics of meningococcal meningitis in Niger: observed patterns in comparison with measles. Epidemiology and Infection. 140: 1356-1365 doi

Blackwood JC, Cummings DAT, Broutin H, Iamsirithaworn S & Rohani P (2012) The population ecology of infectious diseases: pertussis in Thailand as a case study. Parasitology. 139: 1888-1898 doi

Broutin V, Bañuls AL, Aubry A, Keck N, Choisy M, Bernardet JF, Michel C, Raymond JC, Libert C, Barnaud A, Stragier P, Portaels F, Terru D, Belon C, Dereure O, Gutierrez C, Boschiroli ML, Van De Perre P, Cambau E & Godreuil S (2012) Genetic diversity and population structure of Mycobacterium marinum: new insights into host and environmental specificities. Journal of Clinical Microbiology. 50: 3627-3634 doi

Chai N, Bronchain O, Panteix G, Godreuil S, de Medeiros C, Saunders R, Bouts T & de Luze A (2012) Propagation method of saving valuable strains from a Mycobacterium liflandii infection in western clawed frogs (Silurana tropicalis). Journal of Zoo and Wildlife Medicine. 43: 15-19

Godreuil S, Marchandin H, Michon AL, Ponsada M, Chyderiotis G, Brisou P, Bhat A & Panteix G (2012) Mycobacterium riyadhense pulmonary infection, France and Bahrain. Emerging Infectious Diseases. 18: 176-178 doi

Morquin D, Le Moing V, Mura T, Makinson A, Klouche K, Jonquet O, Reynes J & Corne P (2012) Short- and long-term outcomes of HIV-infected patients admitted to the intensive care unit: impact of antiretroviral therapy and immunovirological status. Annals of Intensive Care. 2: 25-25 doi

Taype CA, Agapito JC, Accinelli RA, Espinoza JR, Godreuil S, Goodman SJ, Bañuls AL & Shaw MA (2012) Genetic diversity, population structure and drug resistance of Mycobacterium tuberculosis in Peru. Infection, Genetics and Evolution. 12: 577-585 doi

2011

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Befort P, Corne P, Riviere B, Bourdin A & Jonquet O (2011) Ecthyma gangrenosum and Pseudomonas aeruginosa septicemia in intensive care unit. Annales Francaises d Anesthesie et de Reanimation. 30: 80-82 doi

Caron J, Michot C, Fabre S, Godreuil S, Guillot B & Dereure O (2011) Aggressive cutaneous infection with Mycobacterium marinum in two patients receiving anti-tumor necrosis factor-alfa agents. Journal of the American Academy of Dermatology. 65: 1060-1062 doi

Chowell G, Cazelles B, Broutin H & Munayco CV (2011) The influence of geographic and climate factors on the timing of dengue epidemics in Peru, 1994-2008. BMC Infectious Diseases 8: 164 doi pdf

Jung B, Rimmele T, Le Goff C, Chanques G, Corne P, Jonquet O, Muller L, Lefrant JY, Guervilly C, Papazian L, Allaouchiche B, Jaber S & AzuRea G (2011) Severe metabolic or mixed acidemia on intensive care unit admission: incidence, prognosis and administration of buffer therapy. a prospective, multiple-center study. Critical Care. 15: doi

Kluger N, Terru D & Godreuil S (2011) Bacteriological and fungal survey of commercial tattoo inks used in daily practice in a tattoo parlour. Journal of the European Academy of Dermatology and Venereology. 25: 1230-1231 doi

2010

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Ajithkumar K, Madhavilatha GK, Sulekha B, Godreuil S, Anilkumar AK, Girija K & Mundayoor S (2010) Do Mycobacterium marinum infections occur in India? Indian Journal of Dermatology Venereology & Leprology. 76: 191-U102

Befort P, Corne P, Bourdin A, Bommart S & Jonquet O (2010) Pleural effusion, cystic pulmonary disease and renal mass. Revue des Maladies Respiratoires. 27: 497-499

Bruneel F, Tubach F, Corne P, Megarbane B, Mira JP, Peytel E, Camus C, Schortgen F, Azoulay E, Cohen Y, Georges H, Meybeck A, Hyvernat H, Trouillet JL, Frenoy E, Nicolet L, Roy C, Durand R, Le Bras J, Wolff M & Grp SS (2010) Severe imported falciparum malaria: a cohort study in 400 critically ill adults. PLoS One. 5: e13236

Godreuil S, Jeziorski E, Bañuls AL, Fraisse T, van de Perre P & Boschiroli ML (2010) Intrafamilial cluster of pulmonary Tuberculosis due to Mycobacterium bovis of the African 1 Clonal Complex. Journal of Clinical Microbiology. 48: 4680-4683

Godreuil S, Renaud F, Choisy M, Depina JJ, Garnotel E, Morillon M, Van de Perre P & Bañuls AL (2010) Highly structured genetic diversity of the Mycobacterium tuberculosis population in Djibouti. Clinical Microbiology and Infection. 16: 1024-1026

Jaber S, Jung B, Corne P, Sebbane M, Muller L, Chanques G, Verzilli D, Jonquet O, Eledjam JJ & Lefrant JY (2010) An intervention to decrease complications related to endotracheal intubation in the intensive care unit: a prospective, multiple-center study. Intensive Care Medicine. 36: 248-255

Lavine J, Broutin H, Harvill ET & Bjornstad ON (2010) Imperfect vaccine-induced immunity and whooping cough transmission to infants. Vaccine. 29: 11-16 pdf

Martinez JS, Le Falher G, Corne P, Bourdin A, Lequellec A, Delabre JP, Makinson A, Hansel S, Reynes J & Le Moing V (2010) Adherence to antibiotherapy guidelines for acute community-acquired pneumonia in adults, in a teaching hospital. Médecine et Maladies Infectieuses. 40: 468-475

Massanet P, Corne P, Conseil M, Perrigault PF, Lachaud L, Jaber S, Calvet B, Jonquet O & Reynes J (2010) Antifungal treatments of candidemia in non-neutropenic patients: Evaluation of practice in intensive care units. Médecine et Maladies Infectieuses. 40: 644-649

Panteix G, Gutierrez MC, Boschiroli ML, Rouviere M, Plaidy A, Pressac D, Porcheret H, Chydenotis G, Ponsada M, Van Oortegem K, Salloum S, Cabuzel S, Bañuls AL, Van de Perre P & Godreuil S (2010) Pulmonary tuberculosis due to Mycobacterium microti: a study of six recent cases in France. Journal of Medical Microbiology. 59: 984-989

2009

retour
Byarugaba F, Etter EMC, Godreuil S & Grimaud P (2009) Pulmonary Tuberculosis and Mycobacterium bovis, Uganda. Emerging Infectious Diseases. 15: 124-125

Luong MS, Bret C, Godreuil S, Terru D, Chong G, Vetromile F, Marchandin H & Mourad G (2009) Pyoderma Vegetans in a renal transplant recipient: first case of human infection with Nocardia vinacea. Transplantation. 87: 1898-1899

Marchandin H, Battistella P, Calvet B, Darbas H, Frapier JM, Jean-Pierre H, Parer S, Jumas-Bilak E, Van de Perre P & Godreuil S (2009) Pacemaker surgical site infection caused by Mycobacterium goodii. Journal of Medical Microbiology. 58: 517-520

Millan AS, Depardieu F, Godreuil S & Courvalin P (2009) VanB-type Enterococcus faecium clinical isolate successively inducibly resistant to, dependent on, and constitutively resistant to Vancomycin. Antimicrobial Agents and Chemotherapy. 53: 1974-1982

Muller B, Hilty M, Berg S, Garcia-Pelayo MC, Dale J, Boschiroli ML, Cadmus S, Ngandolo BNR, Godreuil S, Diguimbaye-Djaibe C, Kazwala R, Bonfoh B, Njanpop-Lafourcade BM, Sahraoui N, Guetarni D, Aseffa A, Mekonnen MH, Razanamparany VR, Ramarokoto H, Djonne B, Oloya J, Machado A, Mucavele C, Skjerve E, Portaels F, Rigouts L, Michel A, Muller A, Kallenius G, van Helden PD, Hewinson RG, Zinsstag J, Gordon SV & Smith NH (2009) African 1, an epidemiologically important clonal complex of Mycobacterium bovis dominant in Mali, Nigeria, Cameroon, and Chad. Journal of Bacteriology. 191: 1951-1960

Philippon S, Broutin H, Constantin de Magny G, Toure K, Diakite CH, Fourquet N, Courel MF, Sultan B & Guégan JF (2009) Meningococcal meningitis in Mali: a long-term study of persistence and spread. International Journal of Infectious Diseases. 13: 103-109 pdf

Sunder S, Lanotte P, Godreuil S, Martin C, Boschiroli ML & Besnier JM (2009) Human-to-human transmission of tuberculosis caused by Mycobacterium bovis in immunocompetent patients. Journal of Clinical Microbiology. 47: 1249-1251

2008

retour
Alix E, Godreuil S & Blanc-Potard AB (2008) Identification of a haarlem genotype-specific single nucleotide polymorphism in the mgtC virulence gene of Mycobacterium tuberculosis (vol 44, pg 2093, 2006). Journal of Clinical Microbiology. 46: 3183-3183

Brou T, Broutin H, Elguero E, Asse H & Guégan JF (2008) Landscape diversity related to Buruli ulcer disease in Cote d'Ivoire. PLoS Neglected Tropical Diseases. 2: e271 pdf

Corne P, Bruneel F, Biron-Andreani C & Jonquet O (2008) Purpura fulminans due to imported falciparum malaria. Intensive Care Medicine. 34: 2123-2124

Guégan JF & Broutin H (2008) Microbial communities: Patterns and processes. In Biodiversity Change and Human Health: From Ecosystem Services to Spread of Disease. (Eds. Sala O, Meyerson LA & Parmesan C). Island Press-Scope Diversitas, New York, USA. pp193-210

Lechiche C, Corne P, Bernard F, Reynes J & Jonquet O (2008) Multiple abscesses. Revue de Medecine Interne. 29: 321-322

Yaka P, Sultan B, Broutin H, Janicot S, Philippon S & Fourquet N (2008) Relationships between climate and year-to-year variability in meningitis outbreaks: a case study in Burkina Faso and Niger. International Journal of Health Geographics. 7: 34 pdf

2007

retour
Broutin H, Mantilla-Berniers N & Rohani P (2007) Ecology of infectious diseases: an example for two vaccine-preventable diseases. In Encyclopedia of infectious diseases: Modern methodologies. (Ed. Tibayrenc M). Wiley & Sons Ltd., Chichester, USA pdf

Broutin H, Philippon S, Constantin de Magny G, Courel MF, Sultan B & Guégan JF (2007) Comparative study of meningitis dynamics across nine African countries: a global perspective. International Journal of Health Geographics. 6: 29 pdf

Godreuil S, Marchandin H, Boulier A, Boumzebra A, Campos J & Jean-Pierre H (2007) A 6-year study of glycopeptides-resistant enterococci in 3 intensive care units of the University Hospital of Montpellier. Pathologie Biologie. 55: 418-423

Godreuil S, Renaud F, Van de Perre P, Carriere C, Torrea G & Bañuls AL (2007) Genetic diversity and population structure of Mycobacterium tuberculosis in HIV-1-infected compared with uninfected individuals in Burkina Faso. AIDS. 21: 248-250

Godreuil S, Torrea G, Terru D, Chevenet F, Diagbouga S, Supply P, van de Perre P, Carriere C & Bañuls AL (2007) First molecular epidemiology study of Mycobacterium tuberculosis in Burkina Faso. Journal of Clinical Microbiology. 45: 921-927 pdf

Klouche K, Da Mota EF, Durant R, Amigues L, Corne P, Jonquet O & Beraud JJ (2007) Hypothalamic-pituitary-adrenal axis reactivity and dehydroepiandrosterone sulfate plasma concentrations in the critically ill elderly. Age and Ageing. 36: 686-689

Marchandin H, Jumas-Bilak E, Boumzebra A, Vidal D, Jonquet O & Corne P (2007) Fatal Streptococcus equi subsp. ruminatorum infection in a man. Emerging Infectious Diseases. 13: 1964-1966 pdf

2006

retour
Alix E, Godreuil S, & Blanc-Potard AB (2006) Identification of a Haarlem genotype-specific single nucleotide polymorphism in the mgtC virulence gene of Mycobacterium tuberculosis. Journal of Clinical Microbiology. 44: 2093-2098

Befort P, Corne P, Milhaud D, Segondy M, Landreau L, Jonquet O (2006) Locked-in state due to Epstein-Barr virus primary infection in an immunocompetent patient. Intensive Care Medicine. 32:1672-1673

Brou TY, Broutin H, Dosso M & Guégan JF (2006) Impact des modifications d'habitats (déforestation, aménagements hydro-agricoles, extension des cultures) sur la santé des populations rurales : cas de l'ulcère de Buruli en Côte d'Ivoire.Proceedings of the Fifth FRIEND World Conference held at La Havana, Cuba, November 2006, IAHS Publ. 308: 685-690. pdf

Broutin H, Tarrieu F, Tibayrenc M, Oury B, Barnabé C (2006) Phylogenetic analysis of the glucose-6-phosphate isomerase gene in Trypanosoma cruzi. Experimental Parasitology. 113: 1-7 pdf

Fournier-Wirth C, Deschaseaux M, Defer C, Godreuil S, Carriere C, Bertrand X, Tunez V, Schneider T, Coste J & Morel P (2006) Evaluation of the enhanced bacterial detection system for screening of contaminated platelets. Transfusion. 46: 220-224

Godreuil S, Marchandin H, Terru D, Le Moing V, Chammas M, Vincent V, Jumas-Bilak E, Van De Perre P & Carriere C (2006) Mycobacterium heckeshornense tenosynovitis. Scandinavian Journal of Infectious Diseases. 38: 1098-1101

2005

retour
Broutin H, Guégan JF, Elguero E, Simondon F & Cazelles B (2005) Large-scale comparative analysis of pertussis population dynamics: periodicity, synchrony, and impact of vaccination. American Journal of Epidemiology. 161: 1159-1167 pdf

Broutin H, Mantilla-Beniers N, Simondon F, Aaby P, Grenfell BT, Guégan JF & Rohani P (2005) Epidemiological impact of vaccination on the dynamics of two childhood diseases in rural Senegal. Microbes and Infection. 7: 593-599 pdf

Carriere C, Godreuil S, Gouby A, Vincent V, Marchandin H, Terru D, Delaporte E, Sorokaty JM, Jumas-Bilak E & Van de Perre P (2005) Mycobacterium simiae infections: about two cases. Pathologie Biologie. 53: 324-327

Corne P, Godreuil S, Jean-Pierre H, Jonquet O, Campos J, Jumas-Bilak E, Parer S & Marchandin H (2005) Unusual implication of biopsy forceps in outbreaks of Pseudomonas aeruginosa infections and pseudo-infections related to bronchoscopy. Journal of Hospital Infection. 61: 20-26

Corne P, Grieu T & Jonquet O (2005) Streptococcus pyogenes and Mycoplasma pneumoniae: Pulmonary coinfection or serologic artetact? Presse Medicale. 34: 801-802

Corne P, Marchandin H, Jonquet O, Campos J & Bañuls AL (2005) Molecular evidence that nasal carriage of Staphylococcus aureus plays a role in respiratory tract infections of critically ill patients. Journal of Clinical Microbiology. 43: 3491-3493 pdf

Corne P, Marchandin H, Macia JC, Jonquet O (2005) Treatment failure of methicillin-resistant Staphylococcus aureus endocarditis with linezolid. Scandinavian Journal of Infectious Diseases. 37: 946-949

Godreuil S, Cohan F, Shah H & Tibayrenc M (2005) Which species concept for pathogenic bacteria? An E-Debate. Infection, Genetics and Evolution. 5: 375-387

Godreuil S, Jean-Pierre H, Morel J, Darbas H, Jumas-Bilak E, Bañuls AL & Marchandin H (2005) Unusual case of spondylodiscitis due to Staphylococcus saccharolyticus. Joint Bone Spine. 72: 91-93 pdf

Lechiche C, Corne P, Severac A, Nogues L & Jonquet O (2005) Concomitant discovery of non Hodgkin's lymphoma and bone tuberculosis. Revue de Medecine Interne. 26: 762-763

Thibault L, Corne P, Lechiche C, Sabatier P & Jonquet O (2005) A very purulent lumbar puncture. Revue de Medecine Interne. 26: 594-595