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Biodiversité des Systèmes Infectieux : du Gène à l'Ecosystème

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Axe: "Biodiversité, maladies infectieuses et risque pour la santé humaine"


Coordonnateur: Guillaume CONSTANTIN de MAGNY


Membres de l'équipe

Publications 'MiVEGEC' par membres de l'équipe depuis 2005 :

| 2005 | | 2006 | | 2007 | | 2008 | | 2009 | | 2010 | | 2011 | | 2012 | | 2013 | | 2014 | | 2015 | | 2016 | | 2017 | | 2018 | | 2019 | | 2020 | | 2021 |


Mahamat OO, Kempf M, Lounnas M, Tidjani A, Hide M, Benavides JA, Carriere C, Bañuls AL, Jean-Pierre H, Ouedraogo AS, Dumont Y, Godreuil S (2021) Epidemiology and prevalence of extended-spectrum beta-lactamase- and carbapenemase-producing Enterobacteriaceae in humans, animals and the environment in West and Central Africa. International Journal of Antimicrobial Agents 57: 106203 doi

Sanou S, Ouedraogo AS, Aberkane S, Vendrell J, Ouchar O, Bouzimbi N, Hema A, Poda A, Zoungrana J, Ouedraogo GA, Carriere C, Jean-Pierre H, Traore RO, Godreuil S (2021) Prevalence and molecular characterization of extended spectrum beta-lactamase, plasmid-mediated quinolone resistance, and carbapenemase-producing gram-negative bacilli in burkina faso. Microbial Drug Resistance 27: 18-24 doi


Ayhan N, Prudhomme J, Laroche L, Bañuls AL, Charrel RN (2020) Broader geographical distribution of Toscana virus in the Mediterranean region suggests the existence of larger varieties of sand fly vectors. Microorganisms 8: 114 doi

Bouzinbi N, Marcy O, Bertolotti T, Chiron R, Bemer P, Pestel-Caron M, Peuchant O, Guet-Revillet H, Fangous MS, Hery-Arnaud G, Ouedraogo AS, Bañuls AL, Godreuil S (2020) Evaluation of the genotype NTM-DR assay performance for the identification and molecular detection of antibiotic resistance in Mycobacterium abscessus complex. PLoS One 15: e0239146 doi

Cheng S, Pheng SH, Seiha H, Marks GB, Bañuls AL, Mao TE, Kerleguer A (2020) Evaluation of Loopamp assay for the diagnosis of pulmonary tuberculosis in Cambodia. Biomed Research International 2020: 6828043 doi

Dumont Y, Bonzon L, Michon AL, Carriere C, Didelot MN, Laurens C, Renard B, Veloo ACM, Godreuil S, Jean-Pierre H (2020) Epidemiology and microbiological features of anaerobic bacteremia in two French university hospitals. Anaerobe 64: 102207 doi

Kabore OD, Godreuil S, Drancourt M (2020) Planctomycetes as host-associated bacteria: A perspective that holds promise for their future isolations, by mimicking their native environmental niches in clinical microbiology laboratories. Frontiers in Cellular and Infection Microbiology 10: 519301 doi

Lounnas M, Diack A, Nicol MP, Eyangoh S, Wobudeya E, Marcy O, Godreuil S, Bonnet M (2020) Laboratory development of a simple stool sample processing method diagnosis of pediatric tuberculosis using Xpert Ultra. Tuberculosis 125: 102002 doi

Millogo A, Loukil A, Fellag M, Diallo B, Ouedraogo AS, Godreuil S, Drancourt M (2020) Fluorescent hybridization of Mycobacterium leprae in skin samples collected in Burkina Faso. Journal of Clinical Microbiology 58: e02130-19 doi

Nguema PPM, Onanga R, Atome GRN, Mbeang JCO, Mabika AM, Yaro M, Lounnas M, Dumont Y, Zohra ZF, Godreuil S, Bretagnolle F (2020) Characterization of ESBL-producing enterobacteria from fruit bats in an unprotected area of Makokou, Gabon. Microorganisms 8: 138 doi [- correction -]

Nguyen TVA, Anthony RM, Cao TTH, Bañuls AL, Nguyen VAT, Vu DH, Nguyen NV, Alffenaar JWC (2020) Delamanid resistance: update and clinical management. Clinical Infectious Diseases 71: 3252-3259 doi

Prudhomme J, De Meeus T, Toty C, Cassan C, Rahola N, Vergnes B, Charrel R, Alten B, Sereno D, Bañuls AL (2020) Altitude and hillside orientation shapes the population structure of the Leishmania infantum vector Phlebotomus ariasi. Scientific Reports 10: 14443 doi

Vaselek S, Prudhomme J, Myskova J, Lestinova T, Spitzova T, Bañuls AL, Volf P (2020) Comparative study of promastigote- and amastigote-initiated infection of Leishmania infantum (Kinetoplastida: Trypanosomatidae) in Phlebotomus perniciosus (Diptera: Psychodidae) conducted in different biosafety level laboratories. Journal of Medical Entomology 57: 601-607 doi

Vu NS, Tran SH, Tran PV, Tran TC, Tran DN, Dang AD, Nguyen YT, Vu LT, Ngo PK, Nguyen HV, Cassan C, Nguyen CV, Rahola N, Bañuls AL (2020) Diversity and ecology of sand flies (Diptera: Psychodidae), potential vectors of Leishmania in the Quang Ninh province, Vietnam. Journal of Medical Entomology 57: 259-265 doi

Zaidi FZ, Dali-Yahia R, Zenati K, Yazi L, Lounes M, Aberkane S, Pierre HJ, Barraud O, Godreuil S, Touati A (2020) Characterization of VIM-4 producing clinical Pseudomonas aeruginosa isolates from Western Algeria: Sequence type and class 1 integron description. Microbial Drug Resistance 26: 1437-1441 doi


Bañuls AL (2019) Détecter les tuberculoses résistantes. Science et développement durable, 75 ans de Recherche au Sud pg 96, IRD Editions.

Borand L, de Lauzanne A, Nguyen NL, Cheng S, Pham TH, Eyangoh S, Ouedraogo AS, Ung V, Msellati P, Tejiokem M, Nacro B, Inghammar M, Dim B, Delacourt C, Godreuil S, Blanche S, Marcy O, Bazin B, Rekacewicz C, Colin G, Pediat Asian African Network (2019) Isolation of nontuberculous mycobacteria in Southeast Asian and African human immunodeficiency virus-infected children with suspected tuberculosis. Clinical Infectious Diseases 68: 1750-1753 doi

Filleron A, Laurens ME, Marin G, Marchandin H, Prodhomme O, Alkar F, Godreuil S, Nagot N, Cottalorda J, L'Kaissi M, Rodiere M, Vigue MG, Didelot MN, Michon AL, Delpont M, Louahem D, Jeziorski E (2019) Short-course antibiotic treatment of bone and joint infections in children: a retrospective study at Montpellier University Hospital from 2009 to 2013. Journal of Antimicrobial Chemotherapy 74: 3579-3587 doi

Hernández-Andrade A, Moo-Millan J, Cigarroa-Toledo N, Ramos-Ligonio A, Herrera C, Bucheton B, Bart JM, Jamonneau V, Bañuls AL, Paupy C, Roiz D, Sereno D, Ibarra-Cerdeña CN, Machaín-Williams C, García-Rejón J, Gourbière S, Barnabé C, Telleria J, Oury B, Brenière F, Simard F, Rosado M, Solano P, Dumonteil E, Waleckx E (2019) Metabarcoding: a powerful yet still underestimated approach for the comprehensive study of vector-borne pathogen transmission cycles and their dynamics. In, Current Topics in the Epidemiology of Vector-Borne Diseases. Eds Claborn D, Bhattacharya B, Roy S. pp16. Intech Open

Kabore OD, Aghnatios R, Godreuil S, Drancourt M (2019) Escherichia coli culture filtrate enhances the growth of Gemmata spp. Frontiers in Microbiology 10: 9 2552 doi

Kaboré OD, Godreuil S, Drancourt M (2019) Improved culture of fastidious Gemmata spp. bacteria using marine sponge skeletons. Scientific Reports 9: 11707 doi

Kolia-Diafouka P, Carrere-Kremer S, Lounnas M, Bourdin A, Kremer L, Van de Perre P, Godreuil S, Tuaillon E (2019) Detection of Mycobacterium tuberculosis in paucibacillary sputum: performances of the Xpert MTB/RIF ultra compared to the Xpert MTB/RIF, and IS6110 PCR. Diagnostic Microbiology and Infectious Disease 94: 365-370 doi

Larcher R, Lounnas M, Dumont Y, Michon AL, Bonzon L, Chiron R, Carriere C, Klouche K, Godreuil S (2019) Mycobacterium chimaera pulmonary disease in cystic fibrosis patients, France, 2010-2017. Emerging Infectious Diseases 25: 611-613 doi

Mahamat OO, Lounnas M, Hide M, Dumont Y, Tidjani A, Kamougam K, Abderrahmane M, Benavides J, Solassol J, Bañuls AL, Jean-Pierre H, Carriere C, Godreuil S (2019) High prevalence and characterization of extended-spectrum beta-lactamase producing Enterobacteriaceae in Chadian hospitals. BMC Infectious Diseases 19: 205 doi

Mahamat OO, Lounnas M, Hide M, Tidjani A, Benavides J, Diack A, Somasse C, Gamougam K, Carriere C, Decre D, Bañuls AL, Jean-Pierre H, Dumont Y, Compain F, Godreuil S (2019) Spread of NDM-5 and OXA-181 carbapenemase-producing Escherichia coli in Chad. Antimicrobial Agents and Chemotherapy 63: e00646-19 doi

Mahamat OO, Tidjani A, Lounnas M, Hide M, Benavides J, Somasse C, Ouedraogo AS, Sanou S, Carriere C, Bañuls AL, Jean-Pierre H, Dumont Y, Godreuil S (2019) Fecal carriage of extended-spectrum beta-lactamase-producing Enterobacteriaceae in hospital and community settings in Chad. Antimicrobial Resistance and Infection Control 8: 169 doi

Marcy O, Borand L, Ung V, Msellati P, Tejiokem M, Huu KT, Chau VD, Tran DN, Ateba-Ndongo F, Tetang-Ndiang S, Nacro B, Sanogo B, Neou L, Goyet S, Dim B, Pean P, Quillet C, Fournier I, Berteloot L, Carcelain G, Godreuil S, Blanche S, Delacourt C, Grp Anrs Paanther 01 Study (2019) A treatment-decision score for HIV-infected children with suspected tuberculosis. Pediatrics 144: e20182065 doi

Nabti LZ, Sahli F, Radji N, Mezaghcha W, Semara L, Aberkane S, Lounnas M, Solassol J, Didelot MN, Jean-Pierre H, Dumont Y, Godreuil S (2019) High prevalence of multidrug-resistant Escherichia coli in urine samples from inpatients and outpatients at a tertiary care hospital in Sétif, Algeria. Microbial Drug Resistance 25: 386-393 doi

Nguyen TNA, Anton-Le Berra V, Bañuls AL, Nguyen TV (2019) Molecular diagnosis of drug-resistant tuberculosis; a literature review. Frontiers in Microbiology 10: 794 doi

Ouédraogo AS, Sawadogo Y, Somé DA, Vercoutere A, Sanou S, Ouattara S, Michodigni F, Poda A, Bambara M, Sangaré L, Godreuil S (2019) Prevalence of group B Streptococcus among pregnant women in Bobo-Dioulasso (Burkina Faso). Open Journal of Medical Microbiology 9: 63-76

Siala M, Cassan C, Smaoui S, Kammoun S, Marouane C, Godreuil S, Hachicha S, Mhiri E, Slim L, Gamara D, Messadi-Akrout F, Bañuls AL (2019) A first insight into genetic diversity of Mycobacterium bovis isolated from extrapulmonary tuberculosis patients in South Tunisia assessed by spoligotyping and MIRU VNTR. PLoS Neglected Tropical Diseases 13: e0007707 doi

Somphavong S, Berland JL, Gauthier M, Vu TT, Nguyen QH, Lem V, Vongvichit P, Inthavong D, Akkhavong V, Chanthavilay P, Soundala S, Keovichit I, Paranhos-Baccala G, Paboriboune P, Nguyen TVA, Bañuls AL (2019) First insights into the genetic characteristics and drug resistance of Mycobacterium tuberculosis population collected during the first national tuberculosis prevalence survey of Lao PDR (2010-2011). BMC Infectious Diseases 19: 851 doi

Vendrell JA, Mazieres J, Senal R, Rouquette I, Quantin X, Pujol JL, Roch B, Bouidioua A, Godreuil S, Coyaud E, Brousset P, Solassol J (2019) Ultra-sensitive EGFR(t790m) detection as an independent prognostic marker for lung cancer patients harboring EGFR(del19) mutations and treated with first-generation TKIs. Clinical Cancer Research 25: 4280-4289 doi

Vergnes B, Gazanion E, Mariac C, Du Manoir M, Sollelis L, Lopez-Rubio JJ, Sterkers Y, Bañuls AL (2019) A single amino acid substitution (H451Y) in Leishmania calcium-dependent kinase SCAMK confers high tolerance and resistance to antimony. Journal of Antimicrobial Chemotherapy 74: 3231-3239 doi

Viala B, Zaidi FZ, Bastide M, Dumont Y, Le Moing V, Jean-Pierre H, Godreuil S (2019) Assessment of the in vitro activities of ceftolozane/tazobactam and ceftazidime/avibactam in a collection of beta-lactam-resistant enterobacteriaceae and Pseudomonas aeruginosa clinical isolates at montpellier university hospital, France. Microbial Drug Resistance doi


Aberkane S, Pradel B, Dumont Y, Veloo ACM, Laurens C, Bonzon L, Godreuil S, Marchandin H, Jean-Pierre H (2018) Clinical sources and antimicrobial susceptibility of Prevotella timonensis at the university hospital of Montpellier, France. Anaerobe 50: 19-21 doi

Bañuls AL, Nguyen TVA, Nguyen QH, Nguyen TNA, Tran HH, Godreuil S (2018) Antimicrobial resistance: the 70-year arms race between humans and bacteria. In, Ecology and Evolution of Infectious Diseases in low-income countries: Pathogen Control and Public Health Management in Low-Income Countries. B Roche, H Broutin & F Simard (Eds.) Oxford University Press, New York. pp 77-90 doi

Bañuls AL, Panteix G, Godreuil S (2018) Les mycobactéries tuberculeuses. Précis de Bactériologie Clinique 3ème édition. Eska and Lacassagne, Paris. pp 1744

Baranovsky S, Romano-Bertrand S, Dumont Y, Masnou A, Hammer F, Godreuil S, Parer S, Jumas-Bilak E (2018) Tracking carbapenemase-producing bacteria by molecular typing: population diversity and sampling pitfall. Infection, Genetics and Evolution 65: 104-106 doi

Benavides JA, Shiva C, Virhuez M, Tello C, Appelgren A, Vendrell J, Solassol J, Godreuil S, Streicker DG (2018) Extended-spectrum beta-lactamase-producing Escherichia coli in common vampire bats Desmodus rotundus and livestock in Peru. Zoonoses and Public Health 65: 454-458 doi

Bouam A, Levasseur A, Bonnet M, Borand L, Van Goethem C, Drancourt M, Godreuil S (2018) Complete genome sequence of Mycobacterium sp. strain 3519a. Microbiology Resource Announcements 6: UNSP e01565-17 doi

Bouam A, Levasseur A, Bonnet M, Borand L, Van Goethem C, Drancourt M, Godreuil S (2018) Complete genome sequence of Mycobacterium sp. strain 4858. Microbiology Resource Announcements 6: UNSP e01604-17 doi

Caimmi D, Martocq N, Trioleyre D, Guinet C, Godreuil S, Daniel T, Chiron R (2018) Positive effect of liposomal amikacin for inhalation on Mycobacterium abcessus in cystic fibrosis patients. Open Forum Infectious Diseases 5: UNSP ofy034 doi

Cassan C, Diagne CA, Tatard C, Gauthier P, Dalecky A, Ba K, Kane M, Niang Y, Diallo M, Sow A, Brouat C, Bañuls AL (2018) Leishmania major and Trypanosoma lewisi infection in invasive and native rodents in Senegal. PLoS Neglected Tropical Diseases 12: e0006615 doi

Dumont Y, Lounnas M, Carrière C, Solassol J, Bañuls A.-L, Godreuil S (2018) La tuberculose bovine : une maladie globalisée à l’interface homme-animal. Revue Francophone des Laboratoires 503: 28-33 doi

Godreuil S, Marcy O, Wobudeya E, Bonnet M, Solassol J (2018) Tackling mortality due to childhood tuberculosis. Lancet Public Health 3: E165-E165 doi

Kabore OD, Loukil A, Godreuil S, Drancourt M (2018) Co-culture models illustrate the digestion of Gemmata spp. by phagocytes. Scientific Reports 8: 13311 doi

Kocher A, Valiere S, Bañuls AL, Murienne J (2018) High-throughput sequencing of kDNA amplicons for the analysis of Leishmania minicircles and identification of Neotropical species. Parasitology 145: 585-594 doi

Kolia-Diafouka P, Godreuil S, Bourdin A, Carrere-Kremer S, Kremer L, Van de Perre P, Tuaillon E (2018) Optimized lysis-extraction method combined with IS6110-amplification for detection of Mycobacterium tuberculosis in paucibacillary sputum specimens. Frontiers in Microbiology 9: 2224 doi

Laurens C, Jean-Pierre H, Licznar-Fajardo P, Hantova S, Godreuil S, Martinez O, Jumas-Bilak E (2018) Transmission of IMI-2 carbapenemase-producing Enterobacteriaceae from river water to human. Journal of Global Antimicrobial Resistance 15: 88-92 doi

Moore S, Dongdem AZ, Opare D, Cottavoz P, Fookes M, Sadji AY, Dzotsi E, Dogbe M, Jeddi F, Bidjada B, Piarroux M, Valentin OT, Glele CK, Rebaudet S, Sow AG, Constantin de Magny G, Koivogui L, Dunoyer J, Bellet F, Garnotel E, Thomson N, Piarroux R (2018) Dynamics of cholera epidemics from Benin to Mauritania. PLoS Neglected Tropical Diseases 12: e0006379 doi

Nguyen QH, Contamin L, Nguyen TVA, Bañuls AL (2018) Insights into the processes that drive the evolution of drug resistance in Mycobacterium tuberculosis. Evolutionary Applications 11: 1498-1511 doi

Nguyen TVA, Anthony RM, Bañuls AL, Vu DH, Alffenaar JWC (2018) Bedaquiline resistance: its emergence, mechanism, and prevention. Clinical Infectious Diseases 66: 1625-1630 doi

Panteix G, Bañuls AL, Godreuil S (2018) Les mycobactéries non tuberculeuses. Précis de Bactériologie Clinique 3ème édition. Eska and Lacassagne, Paris. pp 1744

Renier W, Bourdin A, Rubbo PA, Peries M, Dedieu L, Bendriss S, Kremer L, Canaan S, Terru D, Godreuil S, Nagot N, Van de Perre P, Tuaillon E (2018) B cells response directed against Cut4 and CFP21 lipolytic enzymes in active and latent tuberculosis infections. PLoS One 13: e0196470 doi

Sanhueza D, Chevillon C, Bouzinbi N, Godreuil S, Guégan JF (2018) Chitin increases Mycobacterium ulcerans growth in acidic environments. Microbes and Environments 33: 234-237 doi

Vu SN, Tran HS, Tran VP, Tran CT, Tran ND, Nguyen TY, Nguyen VC, Ninh VC, Ngo KP, Rahola N, Bañuls AL (2017) Initial results on distribution and species composition of sand flies, vectors transmitting Leishmania, Quang Ninh 2016. Vietnam Journal of Preventive Medicine 27: 171-176


Aberkane S, Compain F, Decre D, Pantel A, Vittecoq M, Solassol J, Bouzinbi N, Jean-Pierre H, Godreuil S (2017) Persistence of blaCMY-2-producing Proteus mirabilis in two gull colonies at a 1-year interval in southern France. Journal of Global Antimicrobial Resistance 9: 138-140 doi

Aberkane S, Didelot MN, Carriere C, Laurens C, Sanou S, Godreuil S, Jean-Pierre H (2017) Weissella confusa bacteremia: an underestimated opportunistic pathogen. Medecine Et Maladies Infectieuses 47: 297-299 doi

Appelgren A, Morquin D, Dufour S, Le Moing V, Reynes J, Lotthe A, Parer S, Corbeau C, Aubry A, Sougakoff W, Solassol J, Bonzon L, Dumont Y, Godreuil S (2017) Investigation of pre-XDR beijing Mycobacterium tuberculosis transmission to a healthcare worker in France, 2016. Journal of Hospital Infection 97: 414-417 doi

Bañuls AL, Panteix G, Godreuil S (2017) Les mycobactéries tuberculeuses. In, Actualités Permanentes en Microbiologie Clinique. Ed. Freney J. Eska. Series Actinomycètes et Mycobactèries VI:3. Eska

Bonnet M, San KC, Pho Y, Sok C, Dousset JP, Brant W, Hurtado N, Eam KK, Ardizzoni E, Heng SH, Godreuil S, Yew WW, Hewison C (2017) Nontuberculous mycobacteria infections at a provincial reference hospital, Cambodia. Emerging Infectious Diseases 23: 1139-1147 doi

Harrabi M, Ghawar W, Hide M, Bettaieb J, Yazidi R, Jaouadi K, Sana C, Chalgha B, Toumi A, Zaâtour A, Raouène M, Bañuls A.L, Ben Salah (2017) No evidence of interspecific genetic exchange by multi-locus microsatellite typing between Leishmania killicki and Leishmania major in a mixed focus of cutaneous leishmaniasis in South-East Tunisia. Journal of Infectious Diseases & Preventive Medicine 5: 1-7 doi

Huy NQ, Lucie C, Hoa TTT, Hung NV, Lan NTN, Son NT, Nhung NV, Anh DD, Bañuls A.L, Anh NTV (2017) Molecular analysis of pyrazinamide resistance in Mycobacterium tuberculosis in Vietnam highlights the high rate of pyrazinamide resistance-associated mutations in clinical isolates. Emerging Microbes & Infections 6: e86 doi

Kocher A, de Thoisy B, Catzeflis F, Huguin M, Valiere S, Zinger L, Bañuls AL, Murienne J (2017) Evaluation of short mitochondrial metabarcodes for the identification of Amazonian mammals. Methods in Ecology and Evolution 8: 1276-1283 doi

Kocher A, de Thoisy B, Catzeflis F, Valiere S, Bañuls AL, Murienne J (2017) iDNA screening: disease vectors as vertebrate samplers. Molecular Ecology 26: 6478-6486 doi

Kocher A, Gantier JC, Gaborit P, Zinger L, Holota H, Valiere S, Dusfour I, Girod R, Bañuls AL, Murienne J (2017) Vector soup: high-throughput identification of Neotropical phlebotomine sand flies using metabarcoding. Molecular Ecology Resources 17: 172-182 doi

Lehrter V, Bañuls AL, Leger N, Rioux JA, Depaquit J (2017) Phlebotomus (paraphlebotomus) chabaudi and Phlebotomus riouxi: closely related species or synonyms? Parasite 24: 47 doi

Nguyen HQ, Nguyen NV, Contamin L, Tran THT, Vu TT, Nguyen HV, Nguyen NLT, Nguyen ST, Dang AD, Bañuls AL, Nguyen VAT (2017) Quadruple-first line drug resistance in Mycobacterium tuberculosis in Vietnam: what can we learn from genes? Infection, Genetics and Evolution 50: 55-61 doi

Ouedraogo AS, Pierre HJ, Bañuls AL, Ouedraogo R, Godreuil S (2017) Emergence and spread of antibiotic resistance in West Africa: contributing factors and threat assessment. Médecine Et Santé Tropicales 27: 147-154 doi

Ouedraogo AS, Sanou S, Kissou A, Poda A, Aberkane S, Bouzinbi N, Nacro B, Ouedraogo R, Van De Perre P, Carriere C, Decre D, Jean-Pierre H, Godreuil S (2017) Fecal carriage of Enterobacteriaceae producing extended-spectrum beta-lactamases in hospitalized patients and healthy community volunteers in Burkina Faso. Microbial Drug Resistance 23: 63-70 doi

Panteix G, Bañuls AL, Godreuil S (2017) Les mycobactéries non tuberculeuses. In, Actualités Permanentes en Microbiologie Clinique. Ed. Freney J. Eska. Series Actinomycètes et Mycobactèries VI:4. Eska

Rougeron V, De Meeûs T, Bañuls AL (2017) Reproduction in Leishmania: a focus on genetic exchange. Infection, Genetics and Evolution 50: 128-132 doi

Sambe-Ba B, Diallo MH, Seck A, Wane AA, Constantin de Magny G, Boye CSB, Sow AI, Gassama-Sow (2017) Identification of atypical El Tor V. cholerae O1 Ogawa hosting SXT element in Senegal, Africa. Frontiers in Microbiology 8: 748 doi

Sangaré I, Djibougou Djibougou A, Koudraogo Yaméogo B, Drabo F, Diabaté A, Bañuls AL, Fournet F, Price H, Tinga Guiguemdé R, Kounbobr Dabiré R (2017) First detection of Leishmania infantum in domestic dogs from Burkina Faso (West Africa). Research Journal of Parasitology 12: 27-32

Vittecoq M, Laurens C, Brazier L, Durand P, Elguero E, Arnal A, Thomas F, Aberkane S, Renaud N, Prugnolle F, Solassol J, Jean-Pierre H, Godreuil S, Renaud F (2017) VIM-1 carbapenemase-producing Escherichia coli in gulls from southern France. Ecology and Evolution 7: 1224-1232 doi


Aberkane S, Compain F, Decre D, Dupont C, Laurens C, Vittecoq M, Pantel A, Solassol J, Carriere C, Renaud F, Brieu N, Lavigne JP, Bouzinbi N, Ouedraogo AS, Jean-Pierre H, Godreuil S (2016) High prevalence of SXT/R391-related integrative and conjugative elements carrying bla(CMY-2) in Proteus mirabilis isolates from gulls in the South of France. Antimicrobial Agents and Chemotherapy 60: 1148-1152 doi

Alten B, Maia C, Afonso MO, Campino L, Jimenez M, Gonzalez E, Molina R, Bañuls AL, Prudhomme J, Vergnes B, Toty C, Cassan C, Rahola N, Thierry M, Sereno D, Bongiorno G, Bianchi R, Khoury C, Tsirigotakis N, Dokianakis E, Antoniou M, Christodoulou V, Mazeris A, Karakus M, Ozbel Y, Arserim SK, Kasap OE, Gunay F, Oguz G, Kaynas S, Tsertsvadze N, Tskhvaradze L, Giorgobiani E, Gramiccia M, Volf P, Gradoni L (2016) Seasonal dynamics of phlebotomine sand fly species proven vectors of Mediterranean leishmaniasis caused by Leishmania infantum. PLoS Neglected Tropical Diseases 10: e0004458 doi

Cassan C, Dione MM, Dereure J, Diedhiou S, Bucheton B, Hide M, Kako C, Gaye O, Senghor M, Niang AA, Bañuls AL, Faye B (2016) First insights into the genetic diversity and origin of Leishmania infantum in Mont Rolland (Thiès region, Senegal). Microbes and Infection 18: 412-420 doi

Chazel M, Marchandin H, Keck N, Terru D, Carriere C, Ponsoda M, Jacomo V, Panteix G, Bouzinbi N, Bañuls AL, Choisy M, Solassol J, Aubry A, Godreuil S (2016) Evaluation of the SLOMYCO sensititre (R) panel for testing the antimicrobial susceptibility of Mycobacterium marinum isolates. Annals of Clinical Microbiology and Antimicrobials 15: 30 doi

Dupont C, Terru D, Aguilhon S, Frapier JM, Paquis MP, Morquin D, Lamy B, Godreuil S, Parer S, Lotthe A, Jumas-Bilak E, Romano-Bertrand S (2016) Source-case investigation of Mycobacterium wolinskyi cardiac surgical site infection. Journal of Hospital Infection 93: 235-239 doi

Finger F, Genolet T, Mari L, Constantin de Magny G, Manga NM, Rinaldo A, Bertuzzo E (2016) Mobile phone data highlights the role of mass gatherings in the spreading of cholera outbreaks. Proceedings of the National Academy of Sciences USA 113: 6421-6426 doi

Kocher A, Gantier JC, Holota H, Jeziorski C, Coissac E, Bañuls AL, Girod R, Gaborit P, Murienne J (2016) Complete mitochondrial genome of Lutzomyia (Nyssomyia) umbratilis (Diptera: Psychodidae), the main vector of Leishmania guyanensis. Mitochondrial DNA Part A 27: 4219-4221 doi

Loeuillet C, Bañuls AL, Hide M (2016) Study of Leishmania pathogenesis in mice: experimental considerations. Parasites & Vectors 9: 144 doi

Marcy O, Ung V, Goyet S, Borand L, Msellati P, Tejiokem M, Thi NLN, Nacro B, Cheng S, Eyangoh S, Pham TH, Ouedraogo AS, Tarantola A, Godreuil S, Blanche S, Delacourt C, Grp Paanther Study (2016) Performance of Xpert MTB/RIF and alternative specimen collection methods for the diagnosis of tuberculosis in HIV-infected children. Clinical Infectious Diseases 62: 1161-1168 doi

Nguyen VAT, Bañuls AL, Tran THT, Pham KLT, Nguyen TS, Nguyen HV, Nguyen NLT, Dang DA, Marks GB, Choisy M (2016) Mycobacterium tuberculosis lineages and anti-tuberculosis drug resistance in reference hospitals across Viet Nam. BMC Microbiology 16: 167 doi

Ouedraogo AS, Compain F, Sanou M, Aberkane S, Bouzinbi N, Hide M, Sangare L, Ouedraogo-Traore R, Jean-Pierre H, Vendrell J, Solassol J, Decre D, Godreuil S (2016) First description of IncX3 plasmids carrying bla(oxa-181) in Escherichia coli clinical isolates in Burkina Faso. Antimicrobial Agents and Chemotherapy 60: 3240-3242 doi

Ouedraogo AS, Dunyach-Remy C, Kissou A, Sanou S, Poda A, Kyelem CG, Solassol J, Bañuls AL, Van de Perre P, Ouedraogo R, Jean-Pierre H, Lavigne JP, Godreuil S (2016) High nasal carriage rate of Staphylococcus aureus containing Panton-Valentine leukocidin- and EDIN-encoding genes in community and hospital settings in Burkina Faso. Frontiers in Microbiology 7: 1406 doi

Ouedraogo AS, Sanou M, Kissou A, Sanou S, Solare H, Kabore F, Poda A, Aberkane S, Bouzinbi N, Sano I, Nacro B, Sangare L, Carriere C, Decre D, Ouegraogo R, Jean-Pierre H, Godreuil S (2016) High prevalence of extended-spectrum beta-lactamase producing Enterobacteriaceae among clinical isolates in Burkina Faso. BMC Infectious Diseases 16: 326 doi

Pomares C, Marty P, Bañuls AL, Lemichez E, Pratlong F, Faucher B, Jeddi F, Moore S, Michel G, Aluru S, Piarroux R, Hide M (2016) Genetic diversity and population structure of Leishmania infantum from southeastern France: evaluation using multi-locus microsatellite typing. PLoS Neglected Tropical Diseases 10: e0004303 doi

Prudhomme J, Cassan C, Hide M, Toty C, Rahola N, Vergnes B, Dujardin JP, Alten B, Sereno D, Bañuls AL (2016) Ecology and morphological variations in wings of Phlebotomus ariasi (Diptera: Psychodidae) in the region of Roquedur (Gard, France): a geometric morphometrics approach. Parasites & Vectors 9: 578 doi

Senghor MW, Niang AA, Depaquit J, Ferte H, Faye MN, Elguero E, Gaye O, Alten B, Perktas U, Cassan C, Faye B, Bañuls AL (2016) Transmission of Leishmania infantum in the canine leishmaniasis focus of Mont-Rolland, Senegal: ecological, parasitological and molecular evidence for a possible role of Sergentomyia sand flies. PLoS Neglected Tropical Diseases 10: e0004940 doi

Vittecoq M, Godreuil S, Prugnolle F, Durand P, Brazier L, Renaud N, Arnal A, Aberkane S, Jean-Pierre H, Gauthier-Clerc M, Thomas F, Renaud F (2016) Antimicrobial resistance in wildlife. Journal of Applied Ecology 53: 519-529 doi

Vu BNT, Jafari AJ, Aardema M, Tran HKT, Nguyen DNT, Dao TT, Nguyen TV, Tran TK, Nguyen CKT, Fox A, Bañuls AL, Thwaites G, Nguyen KV, Wertheirn HFL (2016) Population structure of colonizing and invasive Staphylococcus aureus strains in northern Vietnam. Journal of Medical Microbiology 65: 298-305 doi


Aberkane S, Compain F, Barraud O, Ouedraogo AS, Bouzinbi N, Vittecoq M, Jean-Pierre H, Decre D, Godreuil S (2015) Non-01/Non-0139 Vibrio cholerae avian isolate from France cocarrying the bla(VIM-1) and bla(VIM-4) genes. Antimicrobial Agents and Chemotherapy 59: 6594-6596 doi

Alten B, Ozbel Y, Ergunay K, Kasap OE, Cull B, Antoniou M, Velo E, Prudhomme J, Molina R, Bañuls AL, Schaffner F, Hendrickx G, Van Bortel W, Medlock JM (2015) Sampling strategies for phlebotomine sand flies (Diptera: Psychodidae) in Europe. Bulletin of Entomological Research 105: 664-678 doi

Aluru S, Hide M, Michel G, Bañuls AL, Marty P, Pomares C (2015) Multilocus microsatellite typing of Leishmania and clinical applications: a review. Parasite. 22: 16 doi

Bañuls AL, Sanou A, Anh NTV, Godreuil S (2015) Mycobacterium tuberculosis: ecology and evolution of a human bacterium. Journal of Medical Microbiology 64: 1261-1269 doi

Bañuls AL, Sanou A, Godreuil S (2015) Mycobacterium tuberculosis : écologie et évolution d’une bactérie humaine. In Maladies Infectieuses. pp 79-102. Eds. M Vittecoq, B Roche, F Prugnolle, F Renaud & F Thomas. de Boeck Solal, Paris

Bañuls AL, Sanou A, Godreuil S (2015) Mycobacterium tuberculosis a fully human bacterium. Biofutur. 361:36-37

Bourgoin A, Karabetsos A, Ouedraogo AS, Aberkan S, Bouzinbi N, Jean-Pierre H, Godreuil S (2015) Intrafamilial transmission of pulmonary tuberculosis due to Mycobacterium bovis. Medecine Et Maladies Infectieuses 45: 394-396 doi

Chaara D, Bañuls AL, Haouas N, Talignani L, Lami P, Mezhoud H, Harrat Z, Dedet JP, Babba H, Pratlong F (2015) Comparison of Leishmania killicki (syn. L. tropica) and Leishmania tropica population structure in Maghreb by microsatellite typing. PLoS Neglected Tropical Diseases 9: e0004204 doi

Chaara D, Ravel C, Bañuls AL, Haouas N, Lami P, Talignani L, El Baidouri F, Jaouadi K, Harrat Z, Dedet JP, Babba H, Pratlong F (2015) Evolutionary history of Leishmania killicki (synonymous Leishmania tropica) and taxonomic implications. Parasites & Vectors. 8 doi

Constantin de Magny G (2015) An ecology of the expanding health. Biofutur. 361: 47-49

Constantin de Magny G (2015) Ecologie de la santé: nouvelles perspectives en santé publique. In Les maladies infectieuses. pp 305-329 Eds. M Vittecoq, B Roche, F Prugnolle, F Renaud & F Thomas. de Boeck Solal, Paris

Harrabi M, Bettaieb J, Ghawar W, Toumi A, Zaâtour A, Yazidi R, Chaâbane S, Chalghaf B, Hide M, Bañuls AL, Ben Salah A (2015) Spatio-temporal genetic structuring of Leishmania major in Tunisia by microsatellite analysis. PLoS Neglected Tropical Diseases 9: e0004017 doi

Hauer A, De Cruz K, Cochard T, Godreuil S, Karoui C, Henault S, Bulach T, Bañuls AL, Biet F, Boschiroli ML (2015) Genetic evolution of Mycobacterium bovis causing tuberculosis in livestock and wildlife in France since 1978. PLoS One. 10: e0117103 doi

Kocher A, Gantier JC, Holota H, Jeziorski C, Coissac E, Bañuls AL, Girod R, Gaborit P, Murienne J (2015) Complete mitochondrial genome of Lutzomyia (Nyssomyia) umbratilis (Diptera: Psychodidae), the main vector of Leishmania guyanensis. Mitochondrial DNA 1-3 doi

Landier J, Constantin de Magny G, Garchitorena A, Guégan JF, Gaudart J, Marsollier L, Le Gall P, Giles-Vernick T, Eyangoh S, Fontanet A, Texier G (2015) Seasonal patterns of Buruli ulcer incidence, Central Africa, 2002-2012. Emerging Infectious Diseases 21: 1414-1417 doi

Massanet PL, Petit L, Louart B, Corne P, Richard C, Preiser, JC (2015) Nutrition rehabilitation in the intensive care unit. Journal of Parenteral and Enteral Nutrition. 39: 391-400 doi

Mathis A, Depaquit J, Dvorak V, Tuten H, Bañuls AL, Halada P, Zapata S, Lehrter V, Hlavackova K, Prudhomme J, Volf P, Sereno D, Kaufmann C, Pfluger V, Schaffner F (2015) Identification of phlebotomine sand flies using one MALDI-TOF MS reference database and two mass spectrometer systems. Parasites & Vectors. 8: 266 doi

Nguyen VAT, Nguyen HQ, Vu TT, Nguyen NAT, Duong CM, Tran THT, Nguyen HV, Dang DA, Bañuls AL (2015) Reduced turn-around time for Mycobacterium tuberculosis drug susceptibility testing with a proportional agar microplate assay. Clinical Microbiology and Infection 21: 1084-1092 doi

Prudhomme J, Rahola N, Toty C, Cassan C, Roiz D, Vergnes B, Thierry M, Rioux JA, Alten B, Sereno D, Bañuls AL (2015) Ecology and spatiotemporal dynamics of sandflies in the Mediterranean Languedoc region (Roquedur area, Gard, France). Parasites & Vectors 8: 642 doi

Prudhomme J, Toty C, Kasap OE, Rahola N, Vergnes B, Maia C, Campino L, Antoniou M, Jimenez M, Molina R, Cannet A, Alten B, Sereno D, Bañuls AL (2015) New microsatellite markers for multi-scale genetic studies on Phlebotomus ariasi Tonnoir, vector of Leishmania infantum in the Mediterranean area. Acta Tropica. 142: 79-85 doi

Rodriguez-Nava V, Durupt S, Chyderiotis S, Freydiere AM, Karsenty J, de Montclos M, Reix P, Durieu I, Nove-Josserand R, Chiron R, Bremont F, Tetu L, Murris M, Terru D, Godreuil S, Bergeron E, Freney J, Boiron P, Vandenesch F, Marchandin H, Segonds C, Doleans-Jordheim A (2015) A French multicentric study and review of pulmonary Nocardia spp. in cystic fibrosis patients. Medical Microbiology and Immunology 204: 493-504 doi

Rondy M, Launay O, Puig-Barbera J, Gefenaite G, Castilla J, Donati KD, Galtier F, Hak E, Guevara M, Costanzo S, Moren A, European Hospital IVE Network [dont Corne P] (2015) 2012/13 influenza vaccine effectiveness against hospitalised influenza A(H1N1)PDM09, A(H3N2) and B: estimates from a european network of hospitals. Eurosurveillance 20: 9-20 Unsp 21011 doi

Rougeron V, de Meeûs T, Bañuls AL (2015) A primer for Leishmania population genetic studies. Trends in Parasitology. 31: 52-59 doi

Rougeron V, de Meeûs T, Bañuls AL (2015) Response to Tibayrenc et al.: Can recombination in Leishmania parasites be so rare? Trends in Parasitology 31: 280-281 doi

Tomas-Perez M, Hide M, Riera C, Montoya L, Bañuls AL, Ribera E, Portus M, Fisa R (2015) Multilocus microsatellite typing of Leishmania infantum isolates in monitored Leishmania/HIV coinfected patients. Parasites & Vectors 8: 386 doi


Brunel AS, Bañuls AL, Marchandin H, Bouzinbi N, Morquin D, Jumas-Bilak E & Corne P (2014) Methicillin-sensitive Staphylococcus aureus CC398 in intensive care unit, France. Emerging Infectious Diseases. 20: 1511-1515 doi

Combes N, Jaffuel D, Cayla G, Granier M, Borel JC, Corne P, Jonquet O, Jaber S, Davy JM & Pepin JL (2014) Pressure-dependent hemodynamic effect of continuous positive airway pressure in severe chronic heart failure: A case series. International Journal of Cardiology. 171: E104-E105 doi

Constantin de Magny G, Hasan NA & Roche B (2014) How community ecology can improve our understanding of cholera dynamics. Frontiers in Microbiology. 5: 5 doi

Godreuil S, Leban N, Padilla A, Hamel R, Luplertlop N, Chauffour A, Vittecoq M, Hoh F, Thomas F, Sougakoff W, Lionne C, Yssel H & Missé D (2014) Aedesin: structure and antimicrobial activity against multidrug resistant bacterial strains. PLoS One. 9: e105441 doi

Haley BJ, Kokashvili T, Tskshvediani A, Janelidze N, Mitaishvili N, Grim CJ, Constantin de Magny G, Chen AJ, Taviani E, Eliashvili T, Tediashvili M, Whitehouse C, Colwell RR & Huq A (2014) Molecular diversity and predictability of Vibrio parahaemolyticus along the Georgian coastal zone of the Black Sea. Frontiers in Microbiology. 5: 45 doi

Laurens C, Hery-Arnaud G, Chiron R, Oziol E, Jean-Pierre H, Bouzinbi N, Perre PV, Bañuls AL & Godreuil S (2014) Sacroiliitis secondary to catheter-related bacteremia due to Mycobacterium abscessus (sensu stricto). Annals of Clinical Microbiology and Antimicrobials. 13: 9 doi

Massanet P, Jung B, Molinari N, Villiet M, Moulaire V, Roch-Torreilles I, Jaber S, Reynes J & Corne P (2014) Antifungal treatment for suspected or proved candidiasis in the critically ill. Annales Francaises d Anesthesie et de Reanimation. 33: 232-239 doi

Roche B, Broutin H, Choisy M, Godreuil S, Constantin de Magny G, Chevaleyre Y, Zucker JD, Breban R, Cazelles B & Simard F (2014) The niche reduction approach: an opportunity for optimal control of infectious diseases in low-income countries? BMC Public Health. 14: 753 doi

Sanou A, Tarnagda Z, Kanyala E, Zingue D, Nouctara M, Ganamé Z, Combary A, Hien H, Dembele M, Kabore A, Meda N, Van de Perre P, Neveu D, Bañuls AL & Godreuil S (2014) Mycobacterium bovis in Burkina Faso: epidemiologic and genetic links between human and cattle isolates. PLoS Neglected Tropical Diseases. 8: e3142 doi

Singh S, Bouzinbi N, Chaturvedi V, Godreuil S & Kremer L (2014) In vitro evaluation of a new drug combination against clinical isolates belonging to the Mycobacterium abscessus complex. Clinical Microbiology and Infection. 20: O1124-O1127 doi


Bañuls AL, Thomas F & Renaud F (2013) Of parasites and men. Infection, Genetics and Evolution. 20: 61-70 doi

Befort P, Corne P, Filleron T, Jung B, Bengler C, Jonquet O & Klouche K (2013) Prognosis and ICU outcome of systemic vasculitis. BMC Anesthesiology. 13: 27 doi

Gomis PF, Jean-Pierre H, Rousseau-Didelot MN, Compan B, Michon AL & Godreuil S (2013) Tigecycline: CMI 50/90 towards 1766 Gram-negative bacilli (3rd generation cephalosporins resistant enterobacteriaceae), Acinetobacter baumannii and Bacteroides fragilis group, University Hospital - Montpellier, 2008-2011. Pathologie Biologie. 61: 282-285 doi

Hide M, Marion E, Pomares C, Fisa R, Marty P & Bañuls AL (2013) Parasitic genotypes appear to differ in leishmaniasis patients compared with asymptomatic related carriers. International Journal for Parasitology. 43: 389-397 doi

Hong DN, Huyen MNT, Lan NTN, Duong NH, Ngo VVN, Ngoc DT, Huu KT, Nguyen T, Do Chau V, Marcy O, Van de Perre P, Bañuls AL & Godreuil S (2013) Rifampin-resistant Mycobacterium bovis BCG-induced disease in HIV-infected infant, Vietnam. Emerging Infectious Diseases. 19: 1168-1170 doi

Phung TN, Caruso D, Godreuil S, Keck N, Vallaeys T & Avarre JC (2013) Rapid detection and identification of nontuberculous mycobacterial pathogens in fish by using high-resolution melting analysis. Applied and Environmental Microbiology. 79: 7837-7845 doi

Zingue D, Hien H, Meda N, Zida S, Kabore A, Sanou A, Ouedraogo AS, Gomgnimbou M, Diande S, Tarnagda Z & Godreuil S (2013) Advantages and drawbacks of expectoration decontamination methods for tuberculosis and anti-tuberculosis drug resistance diagnosis. Annales de Biologie Clinique. 71: 283-291 doi


Al-Tam F, Brunel AS, Bouzinbi N, Corne P, Bañuls AL & Shahbazkia HR (2012) DNAGear- a free software for spa type identification in Staphylococcus aureus. BMC Research Notes. 5: 642-642 doi

Befort P, Corne P, Godreuil S, Jung B & Jonquet O (2012) Clinical review of eight patients with acute respiratory distress syndrome due to pulmonary tuberculosis. Scandinavian Journal of Infectious Diseases. 44: 222-224 doi

Benavides JA, Godreuil S, Bodenham R, Ratiarison S, Devos C, Petretto MO, Raymond M & Escobar-Paramo P (2012) No evidence for transmission of antibiotic-resistant Escherichia coli strains from humans to wild western lowland gorillas in Lope National Park, Gabon. Applied and Environmental Microbiology. 78: 4281-4287 doi

Broutin V, Bañuls AL, Aubry A, Keck N, Choisy M, Bernardet JF, Michel C, Raymond JC, Libert C, Barnaud A, Stragier P, Portaels F, Terru D, Belon C, Dereure O, Gutierrez C, Boschiroli ML, Van De Perre P, Cambau E & Godreuil S (2012) Genetic diversity and population structure of Mycobacterium marinum: new insights into host and environmental specificities. Journal of Clinical Microbiology. 50: 3627-3634 doi

Chai N, Bronchain O, Panteix G, Godreuil S, de Medeiros C, Saunders R, Bouts T & de Luze A (2012) Propagation method of saving valuable strains from a Mycobacterium liflandii infection in western clawed frogs (Silurana tropicalis). Journal of Zoo and Wildlife Medicine. 43: 15-19

Constantin de Magny G, Thiaw W, Kumar V, Manga NM, Diop BM, Gueye L, Kamara M, Roche B, Murtugudde R & Colwell RR (2012) Cholera Outbreak in Senegal in 2005: Was Climate a Factor? PLoS One. 7: e44577 doi

Godreuil S, Marchandin H, Michon AL, Ponsada M, Chyderiotis G, Brisou P, Bhat A & Panteix G (2012) Mycobacterium riyadhense pulmonary infection, France and Bahrain. Emerging Infectious Diseases. 18: 176-178 doi

Morquin D, Le Moing V, Mura T, Makinson A, Klouche K, Jonquet O, Reynes J & Corne P (2012) Short- and long-term outcomes of HIV-infected patients admitted to the intensive care unit: impact of antiretroviral therapy and immunovirological status. Annals of Intensive Care. 2: 25-25 doi

Nguyen TVA, Choisy M, Nguyen DH, Thanh HTT, Kim LTP, Phuong TTD, Philippe J, Nguyen TS, Ho ML, Tran SV, Bañuls AL & Dang DA (2012) High prevalence of Beijing and EAI4-VNM genotypes among M. tuberculosis isolates in Northern Vietnam: sampling effect, rural and urban disparities. PLoS One. 7: e45553 doi

Prudhomme J, Gunay F, Rahola N, Ouanaimi F, Guernaoui S, Boumezzough A, Bañuls AL, Sereno D & Alten B (2012) Wing size and shape variation of Phlebotomus papatasi (Diptera: Psychodidae) populations from the south and north slopes of the Atlas Mountains in Morocco. Journal of Vector Ecology. 37: 137-147 doi

Taype CA, Agapito JC, Accinelli RA, Espinoza JR, Godreuil S, Goodman SJ, Bañuls AL & Shaw MA (2012) Genetic diversity, population structure and drug resistance of Mycobacterium tuberculosis in Peru. Infection, Genetics and Evolution. 12: 577-585 doi


Banakar V, Constantin de Magny G, Jacobs J, Murtugudde R, Huq A, Wood RJ & Colwell RR (2011) Temporal and spatial variability in the distribution of Vibrio vulnificus in the Chesapeake Bay: A hindcast study. Ecohealth. 8: 456-467 doi

Bañuls AL, Bastien P, Pomares C, Arevalo J, Fisa R & Hide M (2011) Clinical pleiomorphism in human leishmaniases, with special mention of asymptomatic infection. Clinical Microbiology and Infection. 17: 1451-1461 doi

Befort P, Corne P, Riviere B, Bourdin A & Jonquet O (2011) Ecthyma gangrenosum and Pseudomonas aeruginosa septicemia in intensive care unit. Annales Francaises d Anesthesie et de Reanimation. 30: 80-82 doi

Caron J, Michot C, Fabre S, Godreuil S, Guillot B & Dereure O (2011) Aggressive cutaneous infection with Mycobacterium marinum in two patients receiving anti-tumor necrosis factor-alfa agents. Journal of the American Academy of Dermatology. 65: 1060-1062 doi

Constantin de Magny G, Mozumder PK, Grim CJ, Hasan NA, Naser MN, Alam M, Sack RB, Huq A & Colwell RR (2011) Role of zooplankton diversity in Vibrio cholerae population dynamics and in the incidence of cholera in the Bangladesh sundarbans. Applied and Environmental Microbiology. 77: 6125-6132 doi

Faye B, Bucheton B, Bañuls AL, Senghor MW, Niang AA, Diedhiou S, Konate O, Dione MM, Hide M, Mellul S, Knecht R, Delaunay P, Marty P & Gaye O (2011) Seroprevalence of Leishmania infantum in a rural area of Senegal: analysis of risk factors involved in transmission to humans. Transactions of the Royal Society of Tropical Medicine and Hygiene. 105: 333-340 doi

Jung B, Rimmele T, Le Goff C, Chanques G, Corne P, Jonquet O, Muller L, Lefrant JY, Guervilly C, Papazian L, Allaouchiche B, Jaber S & AzuRea G (2011) Severe metabolic or mixed acidemia on intensive care unit admission: incidence, prognosis and administration of buffer therapy. a prospective, multiple-center study. Critical Care. 15: doi

Kluger N, Terru D & Godreuil S (2011) Bacteriological and fungal survey of commercial tattoo inks used in daily practice in a tattoo parlour. Journal of the European Academy of Dermatology and Venereology. 25: 1230-1231 doi

Rougeron V, Bañuls AL, Carme B, Simon S, Couppie P, Nacher M, Hide M & De Meeus T (2011) Reproductive strategies and population structure in Leishmania: substantial amount of sex in Leishmania Viannia guyanensis. Molecular Ecology. 20: 3116-3127 doi

Rougeron V, Catzeflis F, Hide M, De Meeus T & Bañuls AL (2011) First clinical case of cutaneous leishmaniasis due to Leishmania (Viannia) braziliensis in a domestic cat from French Guiana. Veterinary Parasitology. 181: 325-328 doi

Rougeron V, de Meeûs T, Hide M, Le Falher G, Bucheton B, Dereure J, El-Safi S, Dessein A & Bañuls AL (2011) Multifaceted population structure and reproductive strategy in Leishmania donovani complex in one Sudanese village. PLoS Neglected Tropical Diseases. 5: e1448 doi

Senghor MW, Faye MN, Faye B, Diarra K, Elguero E, Gaye O, Bañuls AL & Niang AA (2011) Ecology of phlebotomine sand flies in the rural community of Mont Rolland (Thies region, Senegal): area of transmission of canine leishmaniasis. PLoS One. 6: e14773 doi


Ajithkumar K, Madhavilatha GK, Sulekha B, Godreuil S, Anilkumar AK, Girija K & Mundayoor S (2010) Do Mycobacterium marinum infections occur in India? Indian Journal of Dermatology Venereology & Leprology. 76: 191-U102

Befort P, Corne P, Bourdin A, Bommart S & Jonquet O (2010) Pleural effusion, cystic pulmonary disease and renal mass. Revue des Maladies Respiratoires. 27: 497-499

Bruneel F, Tubach F, Corne P, Megarbane B, Mira JP, Peytel E, Camus C, Schortgen F, Azoulay E, Cohen Y, Georges H, Meybeck A, Hyvernat H, Trouillet JL, Frenoy E, Nicolet L, Roy C, Durand R, Le Bras J, Wolff M & Grp SS (2010) Severe imported falciparum malaria: a cohort study in 400 critically ill adults. PLoS One. 5: e13236

Godreuil S, Jeziorski E, Bañuls AL, Fraisse T, van de Perre P & Boschiroli ML (2010) Intrafamilial cluster of pulmonary Tuberculosis due to Mycobacterium bovis of the African 1 Clonal Complex. Journal of Clinical Microbiology. 48: 4680-4683

Godreuil S, Renaud F, Choisy M, Depina JJ, Garnotel E, Morillon M, Van de Perre P & Bañuls AL (2010) Highly structured genetic diversity of the Mycobacterium tuberculosis population in Djibouti. Clinical Microbiology and Infection. 16: 1024-1026

Jaber S, Jung B, Corne P, Sebbane M, Muller L, Chanques G, Verzilli D, Jonquet O, Eledjam JJ & Lefrant JY (2010) An intervention to decrease complications related to endotracheal intubation in the intensive care unit: a prospective, multiple-center study. Intensive Care Medicine. 36: 248-255

Martinez JS, Le Falher G, Corne P, Bourdin A, Lequellec A, Delabre JP, Makinson A, Hansel S, Reynes J & Le Moing V (2010) Adherence to antibiotherapy guidelines for acute community-acquired pneumonia in adults, in a teaching hospital. Médecine et Maladies Infectieuses. 40: 468-475

Massanet P, Corne P, Conseil M, Perrigault PF, Lachaud L, Jaber S, Calvet B, Jonquet O & Reynes J (2010) Antifungal treatments of candidemia in non-neutropenic patients: Evaluation of practice in intensive care units. Médecine et Maladies Infectieuses. 40: 644-649

Mercier A, Devillard S, Ngoubangoye B, Bonnabau H, Bañuls AL, Durand P, Salle B, Ajzenberg D & Darde ML (2010) Additional haplogroups of Toxoplasma gondii out of Africa: population structure and mouse-virulence of strains from Gabon. PLoS Neglected Tropical Diseases. 4: e876

Panteix G, Gutierrez MC, Boschiroli ML, Rouviere M, Plaidy A, Pressac D, Porcheret H, Chydenotis G, Ponsada M, Van Oortegem K, Salloum S, Cabuzel S, Bañuls AL, Van de Perre P & Godreuil S (2010) Pulmonary tuberculosis due to Mycobacterium microti: a study of six recent cases in France. Journal of Medical Microbiology. 59: 984-989

Rougeron V, de Meeûs T, Hide M, Waleckx E, Dereure J, Arevalo J, Llanos-Cuentas A & Bañuls AL (2010) A battery of 12 microsatellite markers for genetic analysis of the Leishmania (Viannia) guyanensis complex. Parasitology. 137: 1879-1884 pdf

Rougeron V, de Meeûs T, Ouraga SK, Hide M & Bañuls AL (2010) “Everything you always wanted to know about sex (but were afraid to ask)” in Leishmania after two decades of laboratory and field analyses. PLoS Pathogens. 6: e1001004


Byarugaba F, Etter EMC, Godreuil S & Grimaud P (2009) Pulmonary Tuberculosis and Mycobacterium bovis, Uganda. Emerging Infectious Diseases. 15: 124-125

Constantin de Magny G, Renaud F, Durand P & Guégan JF (2009) Health ecology: a new tool, the macroscope. Ecology and evolution of parasitism. Oxford University Press. (Eds. Thomas F, Guégan JF & Renaud F). pp 129-148 pdf

Laurent T, Van der Auwera G, Hide M, Mertens P, Quispe-Tintaya W, Deborggraeve S, de Doncker S, Lectipteux T, Bañuls AL, Büscher P & Dujardin JC (2009) Identification of Old World Leishmania spp. by specific polymerase chain reaction amplification of cysteine proteinase B genes and rapid dipstick detection. Diagnostic Microbiology and Infectious Disease. 63: 173-181 pdf

Luong MS, Bret C, Godreuil S, Terru D, Chong G, Vetromile F, Marchandin H & Mourad G (2009) Pyoderma Vegetans in a renal transplant recipient: first case of human infection with Nocardia vinacea. Transplantation. 87: 1898-1899

Marchandin H, Battistella P, Calvet B, Darbas H, Frapier JM, Jean-Pierre H, Parer S, Jumas-Bilak E, Van de Perre P & Godreuil S (2009) Pacemaker surgical site infection caused by Mycobacterium goodii. Journal of Medical Microbiology. 58: 517-520

Millan AS, Depardieu F, Godreuil S & Courvalin P (2009) VanB-type Enterococcus faecium clinical isolate successively inducibly resistant to, dependent on, and constitutively resistant to Vancomycin. Antimicrobial Agents and Chemotherapy. 53: 1974-1982

Muller B, Hilty M, Berg S, Garcia-Pelayo MC, Dale J, Boschiroli ML, Cadmus S, Ngandolo BNR, Godreuil S, Diguimbaye-Djaibe C, Kazwala R, Bonfoh B, Njanpop-Lafourcade BM, Sahraoui N, Guetarni D, Aseffa A, Mekonnen MH, Razanamparany VR, Ramarokoto H, Djonne B, Oloya J, Machado A, Mucavele C, Skjerve E, Portaels F, Rigouts L, Michel A, Muller A, Kallenius G, van Helden PD, Hewinson RG, Zinsstag J, Gordon SV & Smith NH (2009) African 1, an epidemiologically important clonal complex of Mycobacterium bovis dominant in Mali, Nigeria, Cameroon, and Chad. Journal of Bacteriology. 191: 1951-1960

Philippon S, Broutin H, Constantin de Magny G, Toure K, Diakite CH, Fourquet N, Courel MF, Sultan B & Guégan JF (2009) Meningococcal meningitis in Mali: a long-term study of persistence and spread. International Journal of Infectious Diseases. 13: 103-109 pdf

Rougeron V, de Meeûs T, Hide M, Waleckx E, Bermudez H, Arevalo J, Llanos-Cuentas A, Dujardin JC, de Doncker S, Le Ray D, Ayala FJ & Bañuls AL (2009) Extreme inbreeding in Leishmania braziliensis. Proceedings of the National Academy of Sciences USA. 106: 10224-10229 pdf

Sunder S, Lanotte P, Godreuil S, Martin C, Boschiroli ML & Besnier JM (2009) Human-to-human transmission of tuberculosis caused by Mycobacterium bovis in immunocompetent patients. Journal of Clinical Microbiology. 47: 1249-1251


Alix E, Godreuil S & Blanc-Potard AB (2008) Identification of a haarlem genotype-specific single nucleotide polymorphism in the mgtC virulence gene of Mycobacterium tuberculosis (vol 44, pg 2093, 2006). Journal of Clinical Microbiology. 46: 3183-3183

Constantin de Magny G, Renaud F, Durand P, Guégan JF (2008) Ecology of health: the macroscope as a new tool! In Ecology and Evolution of Parasitized Systems. Eds F Thomas, JF Guègan & F Renaud. pp.129-138 Oxford University Press

Corne P, Bruneel F, Biron-Andreani C & Jonquet O (2008) Purpura fulminans due to imported falciparum malaria. Intensive Care Medicine. 34: 2123-2124

Devault A & Bañuls AL (2008) The promastigote surface antigen gene family of the Leishmania parasite: differential evolution by positive selection and recombination. BMC Evolutionary Biology. 8: 292

Hide M & Bañuls AL (2008) Polymorphisms of cpb multicopy genes in the Leishmania (Leishmania) donovani complex. Transactions of the Royal Society of Tropical Medicine and Hygiene. 102: 105-106 pdf

Lechiche C, Corne P, Bernard F, Reynes J & Jonquet O (2008) Multiple abscesses. Revue de Medecine Interne. 29: 321-322

Rougeron V, Waleckx E, Hide M, de Meeûs T, Arevalo J, Llanos-Cuentas A & Bañuls AL (2008) A set of 12 microsatellite loci for genetic studies of Leishmania braziliensis. Molecular Ecology Notes. 8: 351-353 pdf


Bañuls AL, Hide M & Prugnolle F (2007) Leishmania and Leishmaniases: a parasite genetic update and advances in taxonomy, epidemiology and pathogenicity in humans. Advances in Parasitology. 64: 1-109 pdf

Broutin H, Philippon S, Constantin de Magny G, Courel MF, Sultan B & Guégan JF (2007) Comparative study of meningitis dynamics across nine African countries: a global perspective. International Journal of Health Geographics. 6: 29 pdf

Cazelles B, Chavez M, Constantin de Magny G, Guégan JF, Hales S (2007) Time-dependent spectral analysis of epidemiological time-series with wavelets. Journal of the Royal Society Interface. 4: 625-636. pdf

Constantin de Magny G, Guégan JF, Petit M & Cazelles B (2007) Regional-scale climate-variability synchrony of cholera epidemics in West Africa. BMC Infectious Diseases. 7: 20 pdf

Dujardin JC, De Doncker S, Jacquet D, Bañuls AL, Balavoine M, Van Bockstaele D, Tibayrenc M, Arevalo J & Le Ray D (2007) Clonal propagation and the fast generation of karyotype diversity: An in vitro Leishmania model. Parasitology. 134: 33-39 pdf

Godreuil S, Marchandin H, Boulier A, Boumzebra A, Campos J & Jean-Pierre H (2007) A 6-year study of glycopeptides-resistant enterococci in 3 intensive care units of the University Hospital of Montpellier. Pathologie Biologie. 55: 418-423

Godreuil S, Renaud F, Van de Perre P, Carriere C, Torrea G & Bañuls AL (2007) Genetic diversity and population structure of Mycobacterium tuberculosis in HIV-1-infected compared with uninfected individuals in Burkina Faso. AIDS. 21: 248-250

Godreuil S, Torrea G, Terru D, Chevenet F, Diagbouga S, Supply P, van de Perre P, Carriere C & Bañuls AL (2007) First molecular epidemiology study of Mycobacterium tuberculosis in Burkina Faso. Journal of Clinical Microbiology. 45: 921-927 pdf

Guégan JF & Constantin de Magny G (2007) Epidemiology in a changing world: the need for a bigger picture! In Encyclopedia of infectious diseases: Modern methodologies. Ed. M Tibayrenc. John Wiley & Sons, inc. pp. 569-589 pdf

Guégan JF, Constantin de Magny G, Durand P & Renaud F (2007) Ecologie de la Santé: Le macroscope comme nouvel outil ! In Ecologie et évolution des systèmes parasites (Eds. Thomas F, Renaud F & Guégan JF). De Boeck Université, Paris, France. pdf

Hide M, Bras-Goncalves R & Bañuls AL (2007) Specific cpb copies within the Leishmania donovani complex: evolutionary interpretations and potential clinical implications in humans. Parasitology. 134: 379-389 pdf

Hide M, Bucheton B, Kamhawi S, Bras-Gonçalves R, Sundar S, Lemesre JL & Bañuls AL (2007) Understanding human leishmaniasis: the need for an integrated approach. In Encyclopedia of infectious diseases: Modern methodologies, Editor M. Tibayrenc. John Wiley & Sons, Inc. pdf

Hide M, Singh R, Kumar B, Bañuls AL, Sundar S (2007) A microculture technique for isolation of Leishmania parasites alive from peripheral blood of visceral leishmaniasis patients. Acta Tropica. 102: 197-200 pdf

Klouche K, Da Mota EF, Durant R, Amigues L, Corne P, Jonquet O & Beraud JJ (2007) Hypothalamic-pituitary-adrenal axis reactivity and dehydroepiandrosterone sulfate plasma concentrations in the critically ill elderly. Age and Ageing. 36: 686-689

Marchandin H, Jumas-Bilak E, Boumzebra A, Vidal D, Jonquet O & Corne P (2007) Fatal Streptococcus equi subsp. ruminatorum infection in a man. Emerging Infectious Diseases. 13: 1964-1966 pdf

Tazi L, Reintjes R & Bañuls AL (2007) Tuberculosis transmission in a high incidence area: A retrospective molecular epidemiological study of Mycobacterium tuberculosis in Casablanca, Morocco. Infection, Genetics and Evolution. 7: 636-644 pdf


Alix E, Godreuil S, & Blanc-Potard AB (2006) Identification of a Haarlem genotype-specific single nucleotide polymorphism in the mgtC virulence gene of Mycobacterium tuberculosis. Journal of Clinical Microbiology. 44: 2093-2098

Befort P, Corne P, Milhaud D, Segondy M, Landreau L, Jonquet O (2006) Locked-in state due to Epstein-Barr virus primary infection in an immunocompetent patient. Intensive Care Medicine. 32:1672-1673

Chevenet F, Brun C, Bañuls AL, Jacq B & Christen R (2006) TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics. 7: 439 pdf

Constantin de Magny G, Cazelles B & Guégan JF (2006) Cholera threat to humans in Ghana is influenced by both global and regional climatic variability. Ecohealth. 3: 223-231 pdf

Constantin de Magny G, Guégan JF, Petit M & Cazelles B (2006) Regional-scale synchrony of cholera epidemics in western Africa with climate variability. Epidemiology. 17: S207-S207

Fournier-Wirth C, Deschaseaux M, Defer C, Godreuil S, Carriere C, Bertrand X, Tunez V, Schneider T, Coste J & Morel P (2006) Evaluation of the enhanced bacterial detection system for screening of contaminated platelets. Transfusion. 46: 220-224

Godreuil S, Marchandin H, Terru D, Le Moing V, Chammas M, Vincent V, Jumas-Bilak E, Van De Perre P & Carriere C (2006) Mycobacterium heckeshornense tenosynovitis. Scandinavian Journal of Infectious Diseases. 38: 1098-1101

Hide M, Bañuls AL (2006) Species-specific PCR assay for L. infantum/L. donovani discrimination. Acta Tropica. 100: 241-245 pdf

Ngouanesavanh T, Guyot K, Certad G, Le Fichoux Y, Chartier C, Verdier RI, Cailliez JC, Camus D, Dei-Cas E & Bañuls AL (2006) Cryptosporidium population genetics: evidence of clonality in isolates from France and Haiti. Journal of Eukaryotic Microbiology. 53: S33-S36


Carriere C, Godreuil S, Gouby A, Vincent V, Marchandin H, Terru D, Delaporte E, Sorokaty JM, Jumas-Bilak E & Van de Perre P (2005) Mycobacterium simiae infections: about two cases. Pathologie Biologie. 53: 324-327

Constantin de Magny G, Paroissin C, Cazelles B, de Lara M, Delmas JF & Guégan JF (2005) Modeling environmental impacts of plankton reservoirs on cholera population dynamics. In ESAIM Proceedings 14: 156-173 pdf

Corne P, Godreuil S, Jean-Pierre H, Jonquet O, Campos J, Jumas-Bilak E, Parer S & Marchandin H (2005) Unusual implication of biopsy forceps in outbreaks of Pseudomonas aeruginosa infections and pseudo-infections related to bronchoscopy. Journal of Hospital Infection. 61: 20-26

Corne P, Grieu T & Jonquet O (2005) Streptococcus pyogenes and Mycoplasma pneumoniae: Pulmonary coinfection or serologic artetact? Presse Medicale. 34: 801-802

Corne P, Marchandin H, Jonquet O, Campos J & Bañuls AL (2005) Molecular evidence that nasal carriage of Staphylococcus aureus plays a role in respiratory tract infections of critically ill patients. Journal of Clinical Microbiology. 43: 3491-3493 pdf

Corne P, Marchandin H, Macia JC, Jonquet O (2005) Treatment failure of methicillin-resistant Staphylococcus aureus endocarditis with linezolid. Scandinavian Journal of Infectious Diseases. 37: 946-949

Garcia AL, Kindt A, Quispe-Tintaya KW, Bermudez H, Llanos A, Arevalo J, Bañuls AL, De Doncker S, Le Ray D & Dujardin JC (2005) American tegumentary leishmaniasis: antigen-gene polymorphism, taxonomy and clinical pleomorphism. Infection, Genetics and Evolution. 5: 109-116 pdf

Godreuil S, Cohan F, Shah H & Tibayrenc M (2005) Which species concept for pathogenic bacteria? An E-Debate. Infection, Genetics and Evolution. 5: 375-387

Godreuil S, Jean-Pierre H, Morel J, Darbas H, Jumas-Bilak E, Bañuls AL & Marchandin H (2005) Unusual case of spondylodiscitis due to Staphylococcus saccharolyticus. Joint Bone Spine. 72: 91-93 pdf

Lechiche C, Corne P, Severac A, Nogues L & Jonquet O (2005) Concomitant discovery of non Hodgkin's lymphoma and bone tuberculosis. Revue de Medecine Interne. 26: 762-763

Quispe-Tintaya KW, Laurent T, Decuypere S, Hide M, Bañuls AL, De Doncker S, Rijal S, Canavate C, Campino L & Dujardin JC (2005) Fluorogenic Assay for Molecular Typing of the Leishmania donovani Complex: Taxonomic and Clinical Applications. Journal of Infectious Diseases. 192: 685-692 pdf

Thibault L, Corne P, Lechiche C, Sabatier P & Jonquet O (2005) A very purulent lumbar puncture. Revue de Medecine Interne. 26: 594-595