Ayala D, Akone-Ella O, Rahola N, Kengne P, Ngangue MF, Mezeme F, Makanga BK, Nigg M, Costantini C, Simard F, Prugnolle F, Roche B, Duron O, Paupy C (2019) Natural Wolbachia infections are common in the major malaria vectors in Central Africa. Evolutionary Applications 12: 1583-1594 doi
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Boundenga L, Ngoubangoye B, Ntie S, Moukodoum ND, Renaud F, Rougeron V, Prugnolle F (2019) Rodent malaria in Gabon: Diversity and host range. International Journal for Parasitology 10: 117-124 doi
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Charpentier MJE, Boundenga L, Beaulieu M, Dibakou SE, Arnathau C, Sidobre C, Willaume E, Mercier-Delarue S, Simon F, Rougeron V, Prugnolle F (2019) A longitudinal molecular study of the ecology of malaria infections in free-ranging mandrills. International Journal for Parasitology 10: 241-251 doi
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Elguero J, Elguero E (2019) About the statistical analysis of theoretically calculated values. Structural Chemistry 30: 283-287 doi
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Galaway F, Yu R, Constantinou A, Prugnolle F, Wright GJ (2019) Resurrection of the ancestral RH5 invasion ligand provides a molecular explanation for the origin of P. falciparum malaria in humans. PLoS Biology 17: doi
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Gildenhard M, Rono EK, Diarra A, Boissiere A, Bascunan P, Carrillo-Bustamante P, Camara D, Kruger H, Mariko M, Mariko R, Mireji P, Nsango SE, Pompon J, Reis Y, Rono MK, Sedan PB, Thailayil J, Traore A, Yapto CV, Awono-Ambene P, Dabire RK, Diabate A, Masiga D, Catteruccia F, Morlais I, Diallo M, Sangare D, Levashina E (2019) Mosquito microevolution drives Plasmodium falciparum dynamics. Nature Microbiology 4: 941-947 doi
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Giraudeau M, Sepp T, Ujvari B, Renaud F, Tasiemski A, Roche B, Capp JP, Thomas F (2019) Differences in mutational processes and intra-tumour heterogeneity between organs the local selective filter hypothesis. Evolution Medicine and Public Health 139-146 doi
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Groc S, Abbate JL, Le Gal F, Gerber A, Tuaillon E, Albert JL, Nkoghe D, Leroy EM, Roche B, Becquart P (2019) High prevalence and diversity of hepatitis B and hepatitis delta virus in Gabon. Journal of Viral Hepatitis 26: 170-182 doi
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Laval G, Peyregne S, Zidane N, Harmant C, Renaud F, Patin E, Prugnolle F, Quintana-Murci L (2019) Recent adaptive acquisition by African rainforest hunter-gatherers of the late pleistocene sickle-cell mutation suggests past differences in malaria exposure. American Journal of Human Genetics 104: 553-561 doi
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Mombo IM, Suquet E, Boundenga L, Mveang-Nzoghe A, Maganga-Mboga C, Arnathau C, Sidobre C, Leroy EM, Rougeron V (2019) Detection of novel astroviruses among rodents of Gabon, Central Africa. Infection, Genetics and Evolution 68: 43-46 doi
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Poinsignon A, Boulanger D, Binetruy F, Elguero E, Darriet F, Gallian P, De Lamballerie X, Charrel RN, Remoué F (2019) Risk factors of exposure to Aedes albopictus bites in mainland France using an immunological biomarker. Epidemiology and Infection 147: Pii s0950268819001286 doi
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Roche B, Martinez P (2019) Separating the local and malignant dimensions of cancer adaptation. Cancer Informatics 18. doi
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So RTY, Chu DKW, Miguel E, Perera Rapm, Oladipo JO, Fassi-Fihri O, Aylet G, Ko RLW, Zhou ZQ, Cheng MS, Kuranga SA, Roger FL, Chevalier V, Webby RJ, Woo PCY, Poon LLM, Peiris M (2019) Diversity of dromedary camel coronavirus HKU23 in African camels revealed multiple recombination events among closely related betacoronaviruses of the subgenus Embecovirus. Journal of Virology 93: e01236-19 doi
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Thomas F, Giraudeau M, Renaud F, Ujvari B, Roche B, Pujol P, Raymond M, Lemaitre JF, Alvergne A (2019) Can postfertile life stages evolve as an anticancer mechanism? PLoS Biology 17: e3000565 doi
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Thomas F, Madsen T, Giraudeau M, Missé D, Hamede R, Vincze O, Renaud F, Roche B, Ujvari B (2019) Transmissible cancer and the evolution of sex. PLoS Biology 17: e3000275 doi
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Thompson RN, Stockwin JE, van Gaalen RD, Polonsky JA, Kamvar ZN, Demarsh PA, Dahlqwist E, Li S, Miguel E, Jombart T, Lessler J, Cauchemez S, Cori (2019) Improved inference of time-varying reproduction numbers during infectious disease outbreaks. Epidemics 29: 100356 doi
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Tolsa MJ, Garcia-Pena GE, Rico-Chavez O, Roche B, Suzan G (2018) Macroecology of birds potentially susceptible to West Nile virus. Proceedings of the Royal Society of London, Series B 285: 20182178 doi
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Vergne T, Meyer A, Long PT, Elkholly DA, Inui K, Padungtod P, Newman SH, Fournie G, Pfeiffer DU (2019) Optimising the detectability of H5N1 and H5N6 highly pathogenic avian influenza viruses in Vietnamese live-bird markets. Scientific Reports 9: 1031 doi
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Abbate JL, Ezenwa VO, Guégan JF, Choisy M, Nacher M, Roche B (2018) Disentangling complex parasite interactions: protection against cerebral malaria by one helminth species is jeopardized by co-infection with another. PLoS Neglected Tropical Diseases 12: e0006483 doi
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Boundenga L, Ngoubangoye B, Mombo IM, Tsoubmou TA, Renaud F, Rougeron V, Prugnolle F (2018) Extensive diversity of malaria parasites circulating in Central African bats and monkeys. Ecology and Evolution 8: 10578-10586 doi
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Chu DKW, Hui KPY, Perera RAPM, Miguel E, Niemeyer D, Zhao JC, Channappanavar R, Dudas G, Oladipo JO, Traore A, Fassi-Fihri O, Ali A, Demissie GF, Muth D, Chan MCW, Nicholls JM, Meyerholz DK, Kuranga SA, Mamo G, Zhou ZQ, So RTY, Hemida MG, Webby RJ, Roger F, Rambaut A, Poon LLM, Perlman S, Drosten C, Chevalier V, Peiris M (2018) MERS coronaviruses from camels in Africa exhibit region-dependent genetic diversity. Proceedings of the National Academy of Sciences USA 115: 3144-3149 doi
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Elguero E, Alkorta I, Elguero J (2018) A theoretical study of the properties of ninety-two "aromatic" six-membered rings including benzene, azines, phosphinines and azaphosphinines. Heteroatom Chemistry 29: e21441 doi
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Falzon LC, Lechner I, Chantziaras I, Collineau L, Courcoul A, Filippitzi ME, Laukkanen-Ninios R, Peroz C, Ferreira JP, Postma M, Prestmo PG, Phythian CJ, Sarno E, Vanantwerpen G, Vergne T, Grindlay DJC, Brennan ML (2018) Quantitative outcomes of a one health approach to study global health challenges. Ecohealth 15: 209-227 doi
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Garchitorena A, Bonds MH, Guégan JF, Roche B (2018) Interactions between ecological and socio-economic drivers of Buruli ulcer burden in Sub-Saharan Africa: opportunities for an improved control. In, Ecology and Evolution of Infectious Diseases: Pathogen Control and Public Health Management in Low-Income Countries. B Roche, H Broutin & F Simard (Eds.) Oxford University Press, New York. pp 217-235 doi
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Gidoin C, Ujvari B, Thomas F, Roche B (2018) How is the evolution of tumour resistance at organ-scale impacted by the importance of the organ for fitness? BMC Evolutionary Biology 18: 185 doi
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Gilabert A, Otto TD, Rutledge GG, Franzon B, Ollomo B, Arnathau C, Durand P, Moukodoum ND, Okouga AP, Ngoubangoye B, Makanga B, Boundenga L, Paupy C, Renaud F, Prugnolle F, Rougeron V (2018) Plasmodium vivax-like genome sequences shed new insights into Plasmodium vivax biology and evolution. PLoS Biology 16: e2006035 doi
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Jacqueline C, Abbate JL, Sorci G, Guégan JF, Thomas F, Roche B (2018) The macroecology of cancer incidences in humans is associated with large-scale assemblages of endemic infections. Infection, Genetics and Evolution 61: 189-196 doi
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Jacqueline C, Bonnefoy N, Charriere GM, Thomas F, Roche B (2018) Personal history of infections and immunotherapy: unexpected links and possible therapeutic opportunities. Oncoimmunology 7: e1466019 doi
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Mellor KC, Meyer A, Elkholly DA, Fournie G, Long PT, Inui K, Padungtod P, Gilbert M, Newman SH, Vergne T, Pfeiffer DU, Stevens KB (2018) Comparative epidemiology of highly pathogenic avian influenza virus H5N1 and H5N6 in Vietnamese live bird markets: spatiotemporal patterns of distribution and risk factors. Frontiers in Veterinary Science 5: 51 doi
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Meyer A, Dinh TX, Han TA, Do DV, Nhu TV, Pham LT, Nguyen TTT, Newman S, Hasler B, Pfeiffer DU, Vergne T (2018) Trade patterns facilitating highly pathogenic avian influenza virus dissemination in the free-grazing layer duck system in Vietnam. Transboundary and Emerging Diseases 65: 408-419 doi
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Miguel E, Fournet F, Yerbanga S, Moiroux N, Yao F, Vergne T, Cazelles B, Dabire RK, Simard F, Roche B (2018) Optimizing public health strategies in low-income countries: epidemiology, ecology and evolution for the control of malaria. In, Ecology and Evolution of Infectious Diseases: Pathogen Control and Public Health Management in Low-Income Countries. B Roche, H Broutin & F Simard (Eds.) Oxford University Press, New York. pp 253-268 doi
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Murray KA, Olivero J, Roche B, Tiedt S, Guégan JF (2018) Pathogeography: leveraging the biogeography of human infectious diseases for global health management. Ecography 41: 1411-1427 doi
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Otto TD, Gilabert A, Crellen T, Bohme U, Arnathau C, Sanders M, Oyola SO, Okouga AP, Boundenga L, Willaume E, Ngoubangoye B, Moukodoum ND, Paupy C, Durand P, Rougeron V, Ollomo B, Renaud F, Newbold C, Berriman M, Prugnolle F (2018) Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria. Nature Microbiology 3: 687-697 doi
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Roche B, Baldet T, Simard F (2018) Infectious diseases in low-income countries: where are we now? In, Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. B Roche, H Broutin & F Simard (Eds.) Oxford University Press, New York. pp 1-16 doi
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Roche B, Broutin H & Simard F (2018) Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. Oxford University Press, New York. Pp. 322 doi
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Roche B, Broutin H, Simard F (2018) Case studies. Afterword IV. In, Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. B Roche, H Broutin & F Simard (Eds.) Oxford University Press, New York. pp 252-252
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Roche B, Broutin H, Simard F (2018) Fundamental knowledge in the evolutionary ecology of infectious diseases. Afterword II. In, Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. B Roche, H Broutin & F Simard (Eds.) Oxford University Press, New York. pp 109-110
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Roche B, Broutin H, Simard F (2018) Optimizing public health strategies in low-income countries: the challegens to apply the scientific knowledge for disease control and for which diseases. In, Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. B Roche, H Broutin & F Simard (Eds.) Oxford University Press, New York. pp 309-317 doi
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Roche B, Broutin H, Simard F (2018) The status of public health in low-income countries. Afterword I. In, Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. B Roche, H Broutin & F Simard (Eds.) Oxford University Press, New York. pp 41-42
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Roche B, Broutin H, Simard F (2018) Tunable methods for public health policies. Afterword III. In, Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. B Roche, H Broutin & F Simard (Eds.) Oxford University Press, New York. pp 198-199
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Roche B, Ujvari B, Thomas F (2018) Fourth international biannual evolution and cancer conference (resistance, resilience, and robustness: Can we target cancer's evolutionary and ecological nature?): Meeting report. Tempe, AZ, USA. December 7-10, 2017. Evolutionary Applications 11: 829-835 doi
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Rouet F, Nouhin J, Zheng DP, Roche B, Black A, Prak S, Leoz M, Gaudy-Graffin C, Ferradini L, Mom C, Mam S, Gautier C, Lesage G, Ken S, Phon K, Kerleguer A, Yang CF, Killam W, Fujita M, Mean C, Fontenille D, Baring F, Plantier JC, Bedford T, Ramos A, Saphonn V (2018) Massive iatrogenic outbreak of human immunodeficiency virus type 1 in rural Cambodia, 2014-2015. Clinical Infectious Diseases 66: 1733-1741 doi
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Thomas F, Kareva I, Raven N, Hamede R, Pujol P, Roche B, Ujvari B (2018) Evolved dependence in response to cancer. Trends in Ecology & Evolution 33: 269-276 doi
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Valls-Fox H, Chamaille-Jammes S, de Garine-Wichatitsky M, Perrotton A, Courbin N, Miguel E, Guerbois C, Caron A, Loveridge A, Stapelkamp B, Muzamba M, Fritz H (2018) Water and cattle shape habitat selection by wild herbivores at the edge of a protected area. Animal Conservation 21: 365-375 doi
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Viboud C, Broutin H & Chowell G (2018) Spatial-temporal transmission dynamics and control of infectious diseases: Ebola virus disease (EVD) as a case study. In, Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. Roche B, Broutin H & Simard F (Eds.) Oxford University Press, New York.
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Viboud C, Broutin H, Chowell G (2018) Spatial-temporal transmission dynamics and control of infectious diseases: ebola virus disease (EVD) as a case study. In, Ecology and Evolution of Infectious Disease: Pathogen Control and Public Health Management in Low-Income Countries. Roche B, Broutin H & Simard F (Eds.) Oxford University Press, New York. pp 43-58 doi
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Al-Shorbaji F, Roche B, Britton R, Andreou D, Gozlan R (2017) Influence of predation on community resilience to disease. Journal of Animal Ecology 86: 1147-1158 doi
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Alkorta I, Elguero J, Elguero E (2017) Nitroxide stable radicals interacting as lewis bases in hydrogen bonds: a search in the cambridge structural data base for intermolecular contacts. Journal of Molecular Structure 1148: 150-161 doi
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Alout H, Roche B, Dabire RK, Cohuet A (2017) Consequences of insecticide resistance on malaria transmission. PLoS Pathogens 13: e1006499 doi
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Arnal A, Jacqueline C, Ujvari B, Leger L, Moreno C, Faugere D, Tasiemski A, Boidin-Wichlacz C, Missé D, Renaud F, Montagne J, Casali A, Roche B, Mery F, Thomas F (2017) Cancer brings forward oviposition in the fly Drosophila melanogaster. Ecology and Evolution 7: 272-276 doi
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Bitome-Essono PY, Ollomo B, Arnathau C, Durand P, Mokoudoum ND, Yacka-Mouele L, Okouga AP, Boundenga L, Mve-Ondo B, Obame-Nkoghe J, Mbehang-Nguema P, Njiokou F, Makanga B, Wattier R, Ayala D, Ayala FJ, Prugnolle F, Paupy C (2017) Tracking zoonotic pathogens using bloodsucking flies as 'flying syringes'. Elife 6: e22069 doi
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Boundenga L, Perkins SL, Ollomo B, Rougeron V, Leroy EM, Renaud F, Prugnolle F (2017) Haemosporidian parasites of reptiles and birds from Gabon, Central Africa. Journal of Parasitology 103: 330-337 doi
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Brazier L, Elguero E, Koumavor CK, Renaud N, Prugnolle F, Thomas F, Ategbo S, Engoba M, Obengui, Leroy EM, Durand P, Renaud F, Becquart P (2017) Evolution in fecal bacterial/viral composition in infants of two central African countries (Gabon and Republic of the Congo) during their first month of life. PLoS One 12: e0185569 doi
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Combe M, Velvin CJ, Morris A, Garchitorena A, Carolan K, Sanhueza D, Roche B, Couppie P, Guégan JF, Gozlan RE (2017) Global and local environmental changes as drivers of Buruli ulcer emergence. Emerging Microbes & Infections 6: e22 doi
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Day KP, Artzy-Randrup Y, Tiedje KE, Rougeron V, Chen DS, Rask TS, Rorick MM, Migot-Nabias F, Deloron P, Luty AJF, Pascual M (2017) Evidence of strain structure in Plasmodium falciparum var gene repertoires in children from Gabon, West Africa. Proceedings of the National Academy of Sciences USA 114: E4103-E4111 doi
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de Meeûs T, Prugnolle F (2017) Clonal evolution. In, Genetics and Evolution of Infectious Diseases. 2nd Edition. Ed. Tibayrenc M. pp 99-113 doi
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Douine M, Gozlan R, Nacher M, Dufour J, Reynaud Y, Elguero E, Combe M, Velvin CJ, Chevillon C, Berlioz-Arthaud A, Labbé S, Sainte-Marie D, Guégan JF, Pradinaud R, Couppié P (2017) Mycobacterium ulcerans infection (Buruli ulcer) in French Guiana, South America, 1969–2013: an epidemiological study. The Lancet Planetary Health 1: e65-e73 doi
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Dupraz M, Toty C, Devillers E, Blanchon T, Elguero E, Vittecoq M, Moutailler S, McCoy KD (2017) Population structure of the soft tick Ornithodoros maritimus and its associated infectious agents within a colony of its seabird host Larus michahellis. International Journal for Parasitology 6: 122-130 doi
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Duron O, Binetruy F, Noel V, Cremaschi J, McCoy KD, Arnathau C, Plantard O, Goolsby J, Pérez de León AA, Heylen DJA, Van Oosten AR, Gottlieb Y, Baneth G, Guglielmone AA, Estrada-Peña A, Opara MN, Zenner L, Vavre F, Chevillon C (2017) Evolutionary changes in symbiont community structure in ticks. Molecular Ecology 26: 2905-2921 doi
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Garchitorena A, Sokolow SH, Roche B, Ngonghala CN, Jocque M, Lund A, Barry M, Mordecai EA, Daily GC, Jones JH, Andrews JR, Bendavid E, Luby SP, LaBeaud AD, Seetah K, Guégan JF, Bonds MH, De Leo G (2017) Disease ecology, health and the environment: a framework to account for ecological and socio-economic drivers in the control of neglected tropical diseases. Philosophical Transactions of the Royal Society B: Biological Sciences 372: 20160128 doi
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Gilabert A, Gauffre B, Parisey N, Le Gallic JF, Lhomme P, Bretagnolle V, Dedryver CA, Baudry J, Plantegenest M (2017) Influence of the surrounding landscape on the colonization rate of cereal aphids and phytovirus transmission in autumn. Journal of Pest Science 90: 447-457 doi
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Hosseini PR, Mills JN, Prieur-Richard AH, Ezenwa VO, Bailly X, Rizzoli A, Suzan G, Vittecoq M, Garcia-Pena GE, Daszak P, Guégan JF, Roche B (2017) Does the impact of biodiversity differ between emerging and endemic pathogens? the need to separate the concepts of hazard and risk. Philosophical Transactions of the Royal Society B: Biological Sciences 372: 20160129 doi
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Jacqueline C, Brazier L, Faugere D, Renaud F, Thomas F, Roche B (2017) Can intestinal microbiota be associated with non-intestinal cancers? Scientific Reports 7: 12722 doi
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Jacqueline C, Tasiemski A, Sorci G, Ujvari B, Maachi F, Missé D, Renaud F, Ewald P, Thomas F, Roche B (2017) Infections and cancer: the "fifty shades of immunity" hypothesis. BMC Cancer 17: 257 doi
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Makanga B, Costantini C, Rahola N, Yangari P, Rougeron V, Ayala D, Prugnolle F, Paupy C (2017) "Show me which parasites you carry and I will tell you what you eat", or how to infer the trophic behavior of hematophagous arthropods feeding on wildlife. Ecology and Evolution 7: 7578-7584 doi
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Meyer A, Dinh TX, Nhu TV, Pham LT, Newman S, Nguyen TTT, Pfeiffer DU, Vergne T (2017) Movement and contact patterns of long-distance free-grazing ducks and avian influenza persistence in Vietnam. PLoS One 12: e0178241 doi
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Meyer A, Zamir L, Gilboa AB, Gelman B, Pfeiffer DU, Vergne T (2017) Quantitative assessment of the risk of release of foot-and-mouth disease virus via export of bull semen from Israel. Risk Analysis 37: 2350-2359 doi
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Miguel E, Chevalier V, Ayelet G, Ben Bencheikh MN, Boussini H, Chu DK, El Berbri I, Fassi-Fihri O, Faye B, Fekadu G, Grosbois V, Ng BC, Perera RA, So T, Traore A, Roger F, Peiris M (2017) Risk factors for MERS coronavirus infection in dromedary camels in Burkina Faso, Ethiopia, and Morocco, 2015. Eurosurveillance 22: 15-24 30498 doi
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Mombo IM, Lukashev AN, Bleicker T, Brunink S, Berthet N, Maganga GD, Durand P, Arnathau C, Boundenga L, Ngoubangoye B, Boue V, Liégeois F, Ollomo B, Prugnolle F, Drexler JF, Drosten C, Renaud F, Rougeron V, Leroy E (2017) African non-human primates host diverse enteroviruses. PLoS One 12: e0169067 doi
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Rasigade JP, Gilabert A, Wirth T (2017) Microbes as tracers of past human demography and migrations. In, Genetics and Evolution of Infectious Diseases. 2nd Edition. Ed. Tibayrenc M. pp 141-165 doi
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Roche B, Gaillard B, Léger L, Pélagie-Moutenda R, Sochacki T, Cazelles B, Ledrans M, Blateau A, Fontenille D, Etienne M, Simard F, Salathe M, Yébakima (2017) An ecological and digital epidemiology analysis on the role of human behavior on the 2014 Chikungunya outbreak in Martinique. Scientific Reports 7: 5967 doi
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Roche B, Rougeron V, Quintana-Murci L, Renaud F, Abbate JL, Prugnolle F (2017) Might interspecific interactions between pathogens drive host evolution? the case of Plasmodium species and duffy-negativity in human populations. Trends in Parasitology 33: 21-29 doi
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Rougeron V, De Meeûs T, Bañuls AL (2017) Reproduction in Leishmania: a focus on genetic exchange. Infection, Genetics and Evolution 50: 128-132 doi
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Rougeron V, Tiedje KE, Chen DS, Rask TS, Gamboa D, Maestre A, Musset L, Legrand E, Noya O, Yalcindag E, Renaud F, Prugnolle F, Day KP (2017) Evolutionary structure of Plasmodium falciparum major variant surface antigen genes in South America: implications for epidemic transmission and surveillance. Ecology and Evolution 7: 9376-9390 doi
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Rutledge GG, Böhme U, Sanders M, Rrid AJ, Cotton JA, Maiga-Ascofare O, Djimde AA, Apinjoh TO, Amenga-Etego L, Manske M, Barnwell JW, Renaud F, Ollomo B, Prugnolle F, Anstey NM, Auburn S, Price RN, McCarthy JS, Kwiatkowski DP, Newbold CI, Berriman M, Otto TD (2017) Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution. Nature 542: 101-+ doi
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Tissot T, Thomas F, Roche B (2017) Non-cell-autonomous effects yield lower clonal diversity in expanding tumors. Scientific Reports 7: 11157 doi
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Vittecoq M, Gauduin H, Oudart T, Bertrand O, Roche B, Guillemain M, Boutron O (2017) Modeling the spread of avian influenza viruses in aquatic reservoirs: a novel hydrodynamic approach applied to the Rhone delta (southern France). Science of the Total Environment 595: 787-800 doi
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Vittecoq M, Laurens C, Brazier L, Durand P, Elguero E, Arnal A, Thomas F, Aberkane S, Renaud N, Prugnolle F, Solassol J, Jean-Pierre H, Godreuil S, Renaud F (2017) VIM-1 carbapenemase-producing Escherichia coli in gulls from southern France. Ecology and Evolution 7: 1224-1232 doi
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Arnal A, Tissot T, Ujvari B, Nunney L, Solary E, Laplane L, Bonhomme F, Vittecoq M, Tasiemski A, Renaud F, Pujol P, Roche B, Thomas F (2016) The guardians of inherited oncogenic vulnerabilities. Evolution 70: 1-6 doi
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Boundenga L, Makanga B, Ollomo B, Gilabert A, Rougeron V, Mve-Ondo B, Arnathau C, Durand P, Moukodoum ND, Okouga AP, Delicat-Loembet L, Yacka-Mouele L, Rahola N, Leroy E, Tidiane BAC, Renaud F, Prugnolle F, Paupy C (2016) Haemosporidian parasites of antelopes and other vertebrates from Gabon, Central Africa. PLoS One 11: e0148958 doi
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Funk AL, Goutard FL, Miguel E, Bourgarel M, Chevalier V, Faye B, Peiris JSM, Van Kerkhove MD, Roger FL (2016) MERS-CoV at the animal-human interface: inputs on exposure pathways from an expert-opinion elicitation. Frontiers in Veterinary Science 3: 88 doi
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García-Peña GE, Garchitorena A, Carolan K, Canard E, Prieur-Richard AH, Suzán G, Mills JN, Roche B, Guégan JF (2016) Niche-based host extinction increases prevalence of an environmentally acquired pathogen. Oikos 125: 1508-1515 doi
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Gilabert A, Curran DM, Harvey SC, Wasmuth JD (2016) Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option. BMC Genomics 17: 476 doi
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Hien DFdS, Dabire KR, Roche B, Diabate A, Yerbanga RS, Cohuet A, Yameogo BK, Gouagna LC, Hopkins RJ, Ouedraogo GA, Simard F, Ouedraogo JB, Ignell R, Lefèvre T (2016) Plant-mediated effects on mosquito capacity to transmit human malaria. PLoS Pathogens 12: e1005773 doi
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Imboumy-Limoukou RK, Maghendi-Nzondo S, Kouna CL, Bounaadja L, Mbang S, Biteghe JC, Eboumbou C, Prugnolle F, Florent I, Lekana-Douki JB (2016) Immunoglobulin response to the low polymorphic Pf113 antigen in children from Lastoursville, south-east of Gabon. Acta Tropica 163: 149-156 doi
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Makanga B, Yangari P, Rahola N, Rougeron V, Elguero E, Boundenga L, Moukodoum ND, Okouga AP, Arnathau C, Durand P, Willaume E, Ayala D, Fontenille D, Ayala FJ, Renaud F, Ollomo B, Prugnolle F, Paupy C (2016) Ape malaria transmission and potential for ape-to-human transfers in Africa. Proceedings of the National Academy of Sciences USA 113: 5329-5334 doi
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Ngoubangoye B, Boundenga L, Arnathau C, Mombo IM, Durand P, Tsoumbou TA, Otoro BV, Sana R, Okouga AP, Moukodoum N, Willaume E, Herbert A, Fouchet D, Rougeron V, Ba CT, Ollomo B, Paupy C, Leroy EM, Renaud F, Pontier D, Prugnolle F (2016) The host specificity of ape malaria parasites can be broken in confined environments. International Journal for Parasitology 46: 737-744 doi
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Obame-Nkoghe J, Rahola N, Bourgarel M, Yangari P, Prugnolle F, Maganga GD, Leroy EM, Fontenille D, Ayala D, Paupy C (2016) Bat flies (Diptera: Nycteribiidae and Streblidae) infesting cave-dwelling bats in Gabon: diversity, dynamics and potential role in Polychromophilus melanipherus transmission. Parasites & Vectors 9: 333 doi
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Roche B, Thomas F (2016) Third international biannual Evolution and Cancer Conference (evolutionary trade-offs and clinical consequences) meeting report. San Francisco, CA, USA. 10-13 December 2015. Evolutionary Applications 9: 423-426 doi
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Rougeron V, Suquet E, Maganga GD, Jiolle D, Mombo IM, Bourgarel M, Motsch P, Arnathau C, Durand P, Drexler F, Drosten C, Renaud F, Prugnolle F, Leroy EM (2016) Characterization and phylogenetic analysis of new bat astroviruses detected in Gabon, Central Africa. Acta Virologica 60: 386-392 doi
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Senghor MW, Niang AA, Depaquit J, Ferte H, Faye MN, Elguero E, Gaye O, Alten B, Perktas U, Cassan C, Faye B, Bañuls AL (2016) Transmission of Leishmania infantum in the canine leishmaniasis focus of Mont-Rolland, Senegal: ecological, parasitological and molecular evidence for a possible role of Sergentomyia sand flies. PLoS Neglected Tropical Diseases 10: e0004940 doi
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Sochacki T, Jourdain F, Perrin Y, Noel H, Paty M, de Valk H, Septfons A, Simard F, Fontenille D, Roche B (2016) Imported chikungunya cases in an area newly colonised by Aedes albopictus: mathematical assessment of the best public health strategy. Eurosurveillance 21: 22-30 30221 doi
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Succo T, Leparc-Goffart I, Ferre J, Roiz D, Broche B, Maquart M, Noel H, Catelinois O, Entezam F, Caire D, Jourdain F, Esteve-Moussion I, Cochet A, Paupy C, Rousseau C, Paty M, Golliot F (2016) Autochthonous dengue outbreak in Nimes, South of France, July to September 2015. Eurosurveillance 21: 5-11 30240 doi
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Tchioffo MT, Abate L, Boissière A, Nsango SE, Gimonneau G, Berry A, Oswald E, Dubois D, Morlais I (2016) An epidemiologically successful Escherichia coli sequence type modulates Plasmodium falciparum infection in the mosquito midgut. Infection, Genetics and Evolution 43: 22-30 doi
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Tchioffo MT, Boissière A, Abate L, Nsango SE, Bayibéki AN, Awono-Ambéné PH, Christen R, Gimonneau G, Morlais I (2016) Dynamics of bacterial community composition in the malaria mosquito's epithelia. Frontiers in Microbiology 6: 1500 doi
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Tissot T, Arnal A, Jacqueline C, Poulin R, Lefèvre T, Mery F, Renaud F, Roche B, Massol F, Salzet M, Ewald P, Tasiemski A, Ujvari B, Thomas F (2016) Host manipulation by cancer cells: expectations, facts, and therapeutic implications. Bioessays 38: 276-285 doi
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Tissot T, Ujvari B, Solary E, Lassus P, Roche B, Thomas F (2016) Do cell-autonomous and non-cell-autonomous effects drive the structure of tumor ecosystems? BBA Reviews on Cancer 1865: 147-154 doi
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Ujvari B, Beckmann C, Biro PA, Arnal A, Tasiemski A, Massol F, Salzet M, Mery F, Boidin-Wichlacz C, Missé D, Renaud F, Vittecoq M, Tissot T, Roche B, Poulin R, Thomas F (2016) Cancer and life-history traits: lessons from host-parasite interactions. Parasitology 143: 533-541 doi
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Vantaux A, Lefèvre T, Cohuet A, Dabire KR, Roche B, Roux O (2016) Larval nutritional stress affects vector life history traits and human malaria transmission. Scientific Reports 6: 36778 doi
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Vittecoq M, Godreuil S, Prugnolle F, Durand P, Brazier L, Renaud N, Arnal A, Aberkane S, Jean-Pierre H, Gauthier-Clerc M, Thomas F, Renaud F (2016) Antimicrobial resistance in wildlife. Journal of Applied Ecology 53: 519-529 doi
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Arnal A, Ujvari B, Crespi B, Gatenby RA, Tissot T, Vittecoq M, Ewald PW, Casali A, Ducasse H, Jacqueline C, Missé D, Renaud F, Roche B, Thomas F (2015) Evolutionary perspective of cancer: myth, metaphors, and reality. Evolutionary Applications 8: 541-544 doi
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Boué V, Locatelli S, Boucher F, Ayouba A, Butel C, Esteban A, Okouga AP, Ndoungouet A, Motsch P, Le Flohic G, Ngari P, Prugnolle F, Ollomo B, Rouet F, Liégeois F (2015) High rate of simian immunodeficiency virus (SIV) infections in wild chimpanzees in northeastern Gabon. Viruses 7: 4997-5015 doi
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Boundenga L, Ollomo B, Rougeron V, Mouele LY, Mve-Ondo B, Delicat-Loembet LM, Moukodoum ND, Okouga AP, Arnathau C, Elguero E, Durand P, Liégeois F, Boue V, Motsch P, Le Flohic G, Ndoungouet A, Paupy C, Ba CT, Renaud F, Prugnolle F (2015) Diversity of malaria parasites in great apes in Gabon. Malaria Journal. 14: 111 doi
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Daoust SP, King KC, Brodeur J, Roitberg BD, Roche B, Thomas F (2015) Making the best of a bad situation: host partial resistance and bypass of behavioral manipulation by parasites? Trends in Parasitology 31: 413-418 doi
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Delicat-Loembet L, Rougeron V, Ollomo B, Arnathau C, Roche B, Elguero E, Moukodoum ND, Okougha AP, Ondo BM, Boundenga L, Houze S, Galan M, Nkoghe D, Leroy EM, Durand P, Paupy C, Renaud F, Prugnolle F (2015) No evidence for ape Plasmodium infections in humans in Gabon. PLoS One 10: e0126933 doi
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Ducasse H, Arnal A, Vittecoq M, Daoust SP, Ujvari B, Jacqueline C, Tissot T, Ewald P, Gatenby RA, King KC, Bonhomme F, Brodeur J, Renaud F, Solary E, Roche B, Thomas F (2015) Cancer: an emergent property of disturbed resource-rich environments? Ecology meets personalized medicine. Evolutionary Applications 8: 527-540 doi
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Ducasse H, Ujvari B, Solary E, Vittecoq M, Arnal A, Bernex F, Pirot N, Missé D, Bonhomme F, Renaud F, Thomas F, Roche B (2015) Can Peto's paradox be used as the null hypothesis to identify the role of evolution in natural resistance to cancer? a critical review. BMC Cancer 15: 792 doi
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Duron O, Noel V, McCoy KD, Bonazzi M, Sidi-Boumedine K, Morel O, Vavre F, Zenner L, Jourdain E, Durand P, Arnathau C, Renaud F, Trape JF, Biguezoton AS, Cremaschi J, Dietrich M, Léger E, Appelgren A, Dupraz M, Gómez-Díaz E, Diatta G, Dayo GK, Adakal H, Zoungrana S, Vial L, Chevillon C (2015) The recent evolution of a maternally-inherited endosymbiont of ticks led to the emergence of the Q fever pathogen, Coxiella burnetii. PLoS Pathogens11 : e1004892 doi
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Elbir H, FotsoFotso A, Diatta G, Trape JF, Arnathau C, Renaud F, Durand P (2015) Ubiquitous bacteria Borrelia crocidurae in Western African ticks Ornithodoros sonrai. Parasites & Vectors 8: 477 doi
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Elguero E, Delicat-Loembet LM, Rougeron V, Arnathau C, Roche B, Becquart P, Gonzalez JP, Nkoghe D, Sica L, Leroy EM, Durand P, Ayala FJ, Ollomo B, Renaud F, Prugnolle F (2015) Malaria continues to select for sickle cell trait in central africa. Proceedings of the National Academy of Sciences USA 112: 7051-7054 doi
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Ezenwa VO, Prieur-Richard AH, Roche B, Bailly X, Becquart P, García-Peña GE, Hosseini PR, Keesing F, Rizzoli A, Suzán G, Vignuzzi M, Vittecoq M, Mills JN, Guégan JF (2015) Interdisciplinarity and infectious diseases: an Ebola case study. PLoS Pathogens 11: e1004992 doi
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Garchitorena A, Guégan JF, Leger L, Eyangoh S, Marsollier L, Roche B (2015) Mycobacterium ulcerans dynamics in aquatic ecosystems are driven by a complex interplay of abiotic and biotic factors. Elife 4: e07616 doi
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Garchitorena A, Ngonghala CN, Guégan JF, Texier G, Bellanger M, Bonds M, Roche B (2015) Economic inequality caused by feedbacks between poverty and the dynamics of a rare tropical disease: the case of Buruli ulcer in sub-Saharan Africa. Proceedings of the Royal Society of London, Series B 282: 20151426 doi
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Garchitorena A, Ngonghala CN, Texier G, Landier J, Eyangoh S, Bonds MH, Guégan JF, Roche B (2015) Environmental transmission of Mycobacterium ulcerans drives dynamics of Buruli ulcer in endemic regions of Cameroon. Scientific Reports 5: 18055 doi
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Gilabert A, Dedryver CA, Stoeckel S, Plantegenest M, Simon JC (2015) Longitudinal clines in the frequency distribution of 'super-clones' in an aphid crop pest. Bulletin of Entomological Research 105: 694-703 doi
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Herbert A, Boundenga L, Meyer A, Moukodoum DN, Okouga AP, Arnathau C, Durand P, Magnus J, Ngoubangoye B, Willaume E, Ba CT, Rougeron V, Renaud F, Ollomo B, Prugnolle F (2015) Malaria-like symptoms associated with a natural Plasmodium reichenowi infection in a chimpanzee. Malaria Journal 14: 220 doi
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Mombo IM, Berthet N, Lukashev AN, Bleicker T, Brünink S, Léger L, Atencia R, Cox D, Bouchier C, Durand P, Arnathau C, Brazier L, Fair JN, Schneider BS, Drexler JF, Prugnolle F, Drosten C, Renaud F, Leroy EM, Rougeron V (2015) First detection of an enterovirus C99 in a captive chimpanzee with acute flaccid paralysis, from the Tchimpounga Chimpanzee Rehabilitation Center, Republic of Congo. PLoS One 10: e0136700 doi
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Mve-Ondo B, Nkoghe D, Arnathau C, Rougeron V, Bisvigou U, Mouele LY, Boundenga L, Durand P, Elguero E, Lemmers S, Delicat-Loembet LM, Diamella-Moukodoum N, Paupy C, Renaud F, Prugnolle F, Ollomo B (2015) Genetic diversity of Plasmodium falciparum isolates from Baka Pygmies and their Bantu neighbours in the north of Gabon. Malaria Journal 14: 395 doi
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N'Dilimabaka N, Berthet N, Rougeron V, Mangombi JB, Durand P, Maganga GD, Bouchier C, Schneider BS, Fair J, Renaud F, Leroy EM (2015) Evidence of Lymphocytic Choriomeningitis virus (LCMV) in domestic mice in Gabon: Risk of emergence of LCMV encephalitis in central Africa. Journal of Virology. 89: 1456-1460. doi
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Roche B, Léger L, L'Ambert G, Lacour G, Foussadier R, Besnard G, Barré-Cardi H, Simard F, Fontenille D (2015) The spread of Aedes albopictus in metropolitan France: contribution of environmental drivers and human activities and predictions for a near future. PLoS One. 10: e0125600 doi
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Roche B, Morand S, Elguero E, Balenghien T, Guégan JF, Gaidet N (2015) Does host receptivity or host exposure drives dynamics of infectious diseases? The case of West Nile virus in wild birds. Infection, Genetics and Evolution 33: 11-19 doi
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Roche B, Ujvari B, Thomas F (2015) Bad luck and cancer: does evolution spin the wheel of fortune? BioEssays. 37: 586-587 doi
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Rougeron V, de Meeûs T, Bañuls AL (2015) A primer for Leishmania population genetic studies. Trends in Parasitology. 31: 52-59 doi
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Rougeron V, de Meeûs T, Bañuls AL (2015) Response to Tibayrenc et al.: Can recombination in Leishmania parasites be so rare? Trends in Parasitology 31: 280-281 doi
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Rougeron V, Feldmann H, Grard G, Becker S, Leroy EM (2015) Ebola and Marburg haemorrhagic fever. Journal of Clinical Virology. 64: 111-119 doi
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Rougeron V, Sam IC, Caron M, Nkoghe D, Leroy E, Roques P (2015) Chikungunya, a paradigm of neglected tropical disease that emerged to be a new health global risk. Journal of Clinical Virology. 64: 144-152 doi
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Roux O, Vantaux A, Roche B, Yameogo KB, Dabiré KR, Diabaté A, Simard F, Lefèvre T (2015) Evidence for carry-over effects of predator exposure on pathogen transmission potential. Proceedings of the Royal Society of London, Series B 282: 20152430 doi
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Stefan LM, Gómez-Díaz E, Elguero E, Proctor HC, McCoy KD, González-Solís J (2015) Niche partitioning of feather mites within a seabird host, Calonectris borealis. PLoS One 10: e0144728 doi
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Suzán G, Garcia-Peña GE, Castro-Arellano I, Rico O, Rubio AV, Tolsá MJ, Roche B, Hosseini PR, Rizzoli A, Murray KA, Zambrana-Torrelio C, Vittecoq M, Bailly X, Aguirre AA, Daszak P, Prieur-Richard AH, Mills JN, Guégan JF (2015) Metacommunity and phylogenetic structure determine wildlife and zoonotic infectious disease patterns in time and space. Ecology and Evolution. 5: 865-873. doi
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Thomas F, Doyon J, Elguero E, Dujardin JP, Brodeur J, Roucher C, Roberta V, Missé D, Raymond M, Trape JF (2015) Plasmodium infections and fluctuating asymmetry among children and teenagers from Senegal. Infection, Genetics and Evolution 32: 97-101 doi
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Vittecoq M, Ducasse H, Arnal A, Møller AP, Ujvari B, Jacqueline CB, Tissot T, Missé D, Bernex, F, Pirot N, Lemberger K, Abadie J, Labrut S, Bonhomme F, Renaud F, Roche B, Thomas F (2015) Animal behaviour and cancer. Animal Behaviour. 101: 19-26 doi
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Vittecoq M, Roche B, Cohen JM, Renaud F, Thomas F, Gauthier-Clerc M (2015) Does the weather play a role in the spread of pandemic influenza? A study of H1N1pdm09 infections in France during 2009-2010. Epidemiology and Infection 143: 3384-3393 doi
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Vittecoq M, Roche B, Prugnolle F, Renaud F, Thomas F (2015) Les maladies infectieuses. de Boeck Solal, Paris
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Constantin de Magny G, Hasan NA & Roche B (2014) How community ecology can improve our understanding of cholera dynamics. Frontiers in Microbiology. 5: 5 doi
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Delicat-Loembet LM, Elguero E, Arnathau C, Durand P, Ollomo B, Ossari S, Mezui-Me-Ndong J, Mboro TM, Becquart P, Nkoghe D, Leroy E, Sica L, Gonzalez JP, Prugnolle F & Renaud F (2014) Prevalence of the sickle cell trait in Gabon: a nationwide study. Infection, Genetics and Evolution. 25: 52-56 doi
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Garchitorena A, Roche B, Kamgang R, Ossomba J, Babonneau J, Landier J, Fontanet A, Flahault A, Eyangoh S, Guégan JF & Marsollier L (2014) Mycobacterium ulcerans ecological dynamics and its association with freshwater ecosystems and aquatic communities: results from a 12-month environmental survey in Cameroon. PLoS Neglected Tropical Diseases. 8: 2879 doi
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Gilabert A, Simon JC, Dedryver CA & Plantegenest M (2014) Do ecological niches differ between sexual and asexual lineages of an aphid species? Evolutionary Ecology. 28: 1095-1104 doi
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Gimonneau G, Tchioffo MT, Abate L, Boissiere A, Awono-Ambene PH, Nsango SE, Christen R & Morlais I (2014) Composition of Anopheles coluzzii and Anopheles gambiae microbiota from larval to adult stages. Infection, Genetics and Evolution. 28: 715-724 doi
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Le Goff G, Goodman SM, Elguero E & Robert V (2014) Survey of the mosquitoes (Diptera: Culicidae) of Mayotte. PLoS One. 9: 696 doi
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Mombo IM, Berthet N, Bouchier C, Fair JN, Schneider BS, Renaud F, Leroy EM, Rougeron V (2014) Characterization of a genogroup I sapovirus isolated from chimpanzees in the republic of congo. Genome Announcements 2: doi
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Otto TD, Rayner JC, Bohme U, Pain A, Spottiswoode N, Sanders M, Quail M, Ollomo B, Renaud F, Thomas AW, Prugnolle F, Conway DJ, Newbold C & Berriman M (2014) Genome sequencing of chimpanzee malaria parasites reveals possible pathways of adaptation to human hosts. Nature Communications. 5: doi
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Rahola N, Makanga B, Yangari P, Jiolle D, Fontenille D, Renaud F, Ollomo B, Ayala D, Prugnolle F & Paupy C (2014) Description of Anopheles gabonensis, a new species potentially involved in rodent malaria transmission in Gabon, Central Africa. Infection, Genetics and Evolution. 28: 628-634 doi
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Roche B, Broutin H, Choisy M, Godreuil S, Constantin de Magny G, Chevaleyre Y, Zucker JD, Breban R, Cazelles B & Simard F (2014) The niche reduction approach: an opportunity for optimal control of infectious diseases in low-income countries? BMC Public Health. 14: 753 doi
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Sy VE, Agnew P, Sidobre C & Michalakis Y (2014) Reduced survival and reproductive success generates selection pressure for the dengue mosquito Aedes aegypti to evolve resistance against infection by the microsporidian parasite Vavraia culicis. Evolutionary Applications. 7: 468-479 doi
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Yalcindag E, Rougeron V, Elguero E, Arnathau C, Durand P, Brisse S, Diancourt L, Aubouy A, Becquart P, D'Alessandro U, Fontenille D, Gamboa D, Maestre A, Menard D, Musset L, Noya O, Veron V, Wide A, Carme B, Legrand E, Chevillon C, Ayala FJ, Renaud F & Prugnolle F (2014) Patterns of selection on Plasmodium falciparum erythrocyte-binding antigens after the colonization of the New World. Molecular Ecology. 23: 1979-1993 doi
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Boissière A, Gimonneau G, Tchioffo MT, Abate L, Bayibeki A, Awono-Ambéné PH, Nsango SE & Morlais I (2013) Application of a qPCR Assay in the investigation of susceptibility to malaria infection of the M and S molecular forms of An. gambiae s.s. in Cameroon. PLoS One. 8: e54820 doi
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Dietrich M, Beati L, Elguero E, Boulinier T & McCoy KD (2013) Body size and shape evolution in host races of the tick Ixodes uriae. Biological Journal of the Linnean Society. 108: 323-334 doi
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Gonzalez JP, Prugnolle F, Leroy E (2013) Men, primates, and germs: an ongoing affair. In, One Health: the Human-Animal-Environment Interfaces in Emerging Infectious Diseases: the Concept and Examples of a One Health Approach. Current Topics in Microbiology and Immunology, 365: 337-353 doi
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Marie A, Boissière A, Tchioffo MT, Poinsignon A, Awono-Ambéné PH, Morlais I, Remoué F & Cornelie S (2013) Evaluation of a real-time quantitative PCR to measure the wild Plasmodium falciparum infectivity rate in salivary glands of Anopheles gambiae. Malaria Journal. 12: 224 doi
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Paupy C, Makanga B, Ollomo B, Rahola N, Durand P, Magnus J, Willaume E, Renaud F, Fontenille D & Prugnolle F (2013) Anopheles moucheti and Anopheles vinckei are candidate vectors of ape Plasmodium parasites, including Plasmodium praefalciparum in Gabon. PLoS One. 8: e57294 doi
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Prugnolle F, Rougeron V, Becquart P, Berry A, Makanga B, Rahola N, Arnathau C, Ngoubangoye B, Menard S, Willaume E, Ayala FJ, Fontenille D, Ollomo B, Durand P, Paupy C & Renaud F (2013) Diversity, host switching and evolution of Plasmodium vivax infecting African great apes. Proceedings of the National Academy of Sciences USA. 110: 8123-8128 doi
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Roche B, Benbow ME, Merritt R, Kimbirauskas R, McIntosh M, Small PLC, Williamson H & Guégan JF (2013) Identifying the Achilles heel of multi-host pathogens: the concept of keystone 'host' species illustrated by Mycobacterium ulcerans transmission. Environmental Research Letters. 8: 7 doi
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Roche B, Rohani P, Dobson AP & Guégan JF (2013) The impact of community organization on vector-borne pathogens. American Naturalist. 181: 1-11 doi
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Roche B, Sprouffske K, Hbid H, Missé D & Thomas F (2013) Peto's paradox revisited: theoretical evolutionary dynamics of cancer in wild populations. Evolutionary Applications. 6: 109-116 doi pdf
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Tchioffo MT, Boissière A, Churcher TS, Abate L, Gimonneau G, Nsango SE, Awono-Ambene PH, Christen R, Berry A & Morlais I (2013) Modulation of malaria infection in Anopheles gambiae mosquitoes exposed to natural midgut bacteria. PLoS One. 8: e81663 doi
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Thomas F, Fisher D, Fort P, Marie JP, Daoust S, Roche B, Grunau C, Cosseau C, Mitta G, Baghdiguian S, Rousset F, Lassus P, Assenat E, Gregoire D, Missé D, Lorz A, Billy F, Vainchenker W, Delhommeau F, Koscielny S, Itzykson R, Tang RP, Fava F, Ballesta A, Lepoutre T, Krasinska L, Dulic V, Raynaud P, Blache P, Quittau-Prevostel C, Vignal E, Trauchessec H, Perthame B, Clairambault J, Volpert V, Solary E, Hibner U & Hochberg ME (2013) Applying ecological and evolutionary theory to cancer: a long and winding road. Evolutionary Applications. 6: 1-10 doi pdf
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Trape JF, Diatta G, Arnathau C, Bitam I, Sarih M, Belghyti D, Bouattour A, Elguero E, Vial L, Mane Y, Balde C, Pugnolle F, Chauvancy G, Mahe G, Granjon L, Duplantier JM, Durand P & Renaud F (2013) The epidemiology and geographic distribution of relapsing fever borreliosis in west and north Africa, with a review of the Ornithodoros erraticus complex (Acari: Ixodida). PLoS One. 8: 78473 doi
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Vittecoq M, Roche B, Daoust SP, Ducasse H, Missé D, Abadie J, Labrut S, Renaud F, Gauthier-Clerc M & Thomas F (2013) Cancer: a missing link in ecosystem functioning? Trends in Ecology & Evolution. 28: 628-635 doi
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Boissiere A, Arnathau C, Duperray C, Berry L, Lachaud L, Renaud F, Durand P & Prugnolle F (2012) Isolation of Plasmodium falciparum by flow-cytometry: implications for single-trophozoite genotyping and parasite DNA purification for whole-genome high-throughput sequencing of archival samples. Malaria Journal. 11: 163 doi
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Boissière A, Tchioffo MT, Bachar D, Abate L, Marie A, Nsango SE, Shahbazkia HR, Awono-Ambene PH, Levashina EA, Christen R & Morlais I (2012) Midgut microbiota of the malaria mosquito vector Anopheles gambiae and interactions with Plasmodium falciparum infection. PLoS Pathogens. 8: e1002742 doi
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Constantin de Magny G, Thiaw W, Kumar V, Manga NM, Diop BM, Gueye L, Kamara M, Roche B, Murtugudde R & Colwell RR (2012) Cholera Outbreak in Senegal in 2005: Was Climate a Factor? PLoS One. 7: e44577 doi
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Diatta G, Souidi Y, Granjon L, Arnathau C, Durand P, Chauvancy G, Mane Y, Sarih Mh, Belghyti D, Renaud F & Trape JF (2012) Epidemiology of tick-borne borreliosis in Morocco. PLoS Neglected Tropical Diseases. 6: 1810 doi
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Roche B, Dobson AP, Guégan JF & Rohani P (2012) Linking community and disease ecology: the impact of biodiversity on pathogen transmission. Philosophical Transactions of the Royal Society B: Biological Sciences. 367: 2807-2813 doi
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Roche B, Hochberg ME, Caulin AF, Maley CC, Gatenby RA, Missé D & Thomas F (2012) Natural resistance to cancers: a Darwinian hypothesis to explain Peto's paradox. BMC Cancer. 12: 387 doi pdf
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Thomas F, Daoust SP, Elguero E & Raymond M (2012) Do mothers from rich and well-nourished countries bear more sons ? Journal of Evolutionary Medicine. 1: 1-5 pdf
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Thomas F, Elguero E, Brodeur J, Roche B, Missé D & Raymond M (2012) Malignancies and high birth weight in human: which cancers could result from antagonistic pleiotropy? Journal of Evolutionary Medicine. 1: 5 pdf
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Thomas F, Lafferty KD, Brodeur J, Elguero E, Gauthier-Clerc M & Missé D (2012) Incidence of adult brain cancers is higher in countries where the protozoan parasite Toxoplasma gondii is common. Biology Letters. 8: 101-103 doi pdf
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Vittecoq M, Elguero E, Lafferty KD, Roche B, Brodeur J, Gauthier-Clerc M, Missé D & Thomas F (2012) Brain cancer mortality rates increase with Toxoplasma gondii seroprevalence in France. Infection, Genetics and Evolution. 12: 496-498 doi
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Vittecoq M, Lafferty KD, Elguero E, Brodeur J, Gauthier-Clerc M, Missé D, Roche B & Thomas F (2012) Cat ownership is neither a strong predictor of Toxoplasma gondii infection nor a risk factor for brain cancer Reply. Biology Letters. 8: 1042-1042doi
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Yalcindag E, Elguero E, Arnathau C, Durand P, Akiana J, Anderson TJ, Aubouy A, Balloux F, Besnard P, Bogreau H, Carnevale P, D'Alessandro U, Fontenille D, Gamboa D, Jombart T, Le Mire J, Leroy E, Maestre A, Mayxay M, Menard D, Musset L, Newton PN, Nkoghe D, Noya O, Ollomo B, Rogier C, Veron V, Wide A, Zakeri S, Carme B, Legrand E, Chevillon C, Ayala FJ, Renaud F & Prugnolle F (2012) Multiple independent introductions of Plasmodium falciparum in South America. Proceedings of the National Academy of Sciences USA. 109: 511-516 doi
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Maure F, Brodeur J, Ponlet N, Doyon J, Firlej A, Elguero E & Thomas F (2011) The cost of a bodyguard. Biology Letters. 7: 843-846 doi pdf
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Prugnolle F, Ayala F, Ollomo B, Arnathau C, Durand P & Renaud F (2011) Plasmodium falciparum is not as lonely as previously considered. Virulence. 2: 71-76 doi
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Prugnolle F, Durand P, Ollomo B, Ayala FJ & Renaud F (2011) Reply to Sharp et al.: Host species sampling bias and Plasmodium falciparum origin paradigm shifts. Proceedings of the National Academy of Sciences USA. 108: E873-E873 doi
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Prugnolle F, Durand P, Ollomo B, Duval L, Ariey F, Arnathau C, Gonzalez JP, Leroy E & Renaud F (2011) A fresh look at the origin of Plasmodium falciparum, the most malignant malaria agent. PLoS Pathogens. 7: e1001283 doi
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Prugnolle F, Ollomo B, Durand P, Yalcindag E, Arnathau C, Elguero E, Berry A, Pourrut X, Gonzalez JP, Nkoghe D, Akiana J, Verrier D, Leroy E, Ayala FJ & Renaud F (2011) African monkeys are infected by Plasmodium falciparum nonhuman primate-specific strains. Proceedings of the National Academy of Sciences USA. 108: 11948-11953 doi
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Roche B & Guégan JF (2011) Ecosystem dynamics, biological diversity and emerging infectious diseases. Comptes Rendus Biologies. 334: 385-392 doi
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Rougeron V, Bañuls AL, Carme B, Simon S, Couppie P, Nacher M, Hide M & De Meeus T (2011) Reproductive strategies and population structure in Leishmania: substantial amount of sex in Leishmania Viannia guyanensis. Molecular Ecology. 20: 3116-3127 doi
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Rougeron V, Catzeflis F, Hide M, De Meeus T & Bañuls AL (2011) First clinical case of cutaneous leishmaniasis due to Leishmania (Viannia) braziliensis in a domestic cat from French Guiana. Veterinary Parasitology. 181: 325-328 doi
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Rougeron V, de Meeûs T, Hide M, Le Falher G, Bucheton B, Dereure J, El-Safi S, Dessein A & Bañuls AL (2011) Multifaceted population structure and reproductive strategy in Leishmania donovani complex in one Sudanese village. PLoS Neglected Tropical Diseases. 5: e1448 doi
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Senghor MW, Faye MN, Faye B, Diarra K, Elguero E, Gaye O, Bañuls AL & Niang AA (2011) Ecology of phlebotomine sand flies in the rural community of Mont Rolland (Thies region, Senegal): area of transmission of canine leishmaniasis. PLoS One. 6: e14773 doi
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Thomas F, Elguero E, Brodeur J, Le Goff J & Missé D (2011) Herpes simplex virus type 2 and cancer: A medical geography approach. Infection, Genetics and Evolution. 11: 1239-1242 doi
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Echaubard P, Duron O, Agnew P, Sidobre C, Noel V, Weill M & Michalakis Y (2010) Rapid evolution of Wolbachia density in insecticide resistant Culex pipiens. Heredity. 104: 15-19 pdf
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Lebarbenchon C, Chang CM, Grandhomme V, Dietrich M, Kayser Y, Elguero E, Renaud F, Thomas F, van der Werf S & Gauthier-Clerc M (2010) Avian influenza circulation in the Camargue (South of France) during the 2006-07 season. Avian Diseases. 54: S446-S449
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Lefèvre T, Gouagna LC, Dabire KR, Elguero E, Fontenille D, Renaud F, Costantini C & Thomas F (2010) Beer consumption increases human attractiveness to malaria mosquitoes. PLoS One. 5: e9546 pdf
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Prugnolle F & de Meeûs T (2010) Apparent high recombination rates in clonal parasitic organisms due to inappropriate sampling design. Heredity. 104: 135-140
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Prugnolle F, Durand P, Neel C, Ollomo B, Ayala FJ, Arnathau C, Etienne L, Mpoudi-Ngole E, Nkoghe D, Leroy E, Delaporte E, Peeters M & Renaud F (2010) African great apes are natural hosts of multiple related malaria species, including Plasmodium falciparum. Proceedings of the National Academy of Sciences USA. 107: 1458-1463 [-supporting information-] pdf
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Prugnolle F, Durand P, Renaud F & Rousset F (2010) Effective size of the hierarchically structured populations of the agent of malaria: a coalescent-based model. Heredity. 104: 371-377
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Rougeron V, de Meeûs T, Hide M, Waleckx E, Dereure J, Arevalo J, Llanos-Cuentas A & Bañuls AL (2010) A battery of 12 microsatellite markers for genetic analysis of the Leishmania (Viannia) guyanensis complex. Parasitology. 137: 1879-1884
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Rougeron V, de Meeûs T, Ouraga SK, Hide M & Bañuls AL (2010) “Everything you always wanted to know about sex (but were afraid to ask)” in Leishmania after two decades of laboratory and field analyses. PLoS Pathogens. 6: e1001004
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Tanabe K, Mita T, Jombart T, Eriksson A, Horibe S, Palacpac N, Ranford-Cartwright L, Sawai H, Sakihama N, Ohmae H, Nakamura M, Ferreira MU, Escalante AA, Prugnolle F, Bjorkman A, Farnert A, Kaneko A, Horii T, Manica A, Kishino H & Balloux F (2010) Plasmodium falciparum accompanied the human expansion out of Africa. Current Biology. 20: 1283-1289
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de Meeûs T, Prugnolle F & Agnew P (2009) Asexual reproduction in infectious diseases. In Lost Sex. Eds. Schön I, Martens K & Dijk P. pp 517-533. Springer, Netherlands
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Garnier S, Durand P, Arnathau C, Risterucci AM, Esparza-Salas R, Cellier-Holzem E & Sorci G (2009) New polymorphic microsatellite loci in the house sparrow, Passer domesticus. Molecular Ecology Resources. 9: 1063-1065
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Kempf F, Boulinier T, de Meeûs T, Arnathau C & McCoy KD (2009) Recent evolution of host-associated divergence in the seabird tick Ixodes uriae. Molecular Ecology. 18: 4450-4462 pdf
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Kempf F, de Meeûs T, Arnathau C, Degeilh B & McCoy KD (2009) Assortative pairing in Ixodes ricinus (Acari: Ixodidae), the European vector of Lyme borreliosis. Journal of Medical Entomology. 46: 471-474 pdf
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Lefèvre T, Gouagna LC, Dabire KR, Elguero E, Fontenille D, Costantini C & Thomas F (2009) Evolutionary lability of odour-mediated host preference by the malaria vector Anopheles gambiae. Tropical Medicine & International Health. 14: 228-236 pdf
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Lefèvre T, Gouagna LC, Dabire KR, Elguero E, Fontenille D, Renaud F, Costantini C & Thomas F (2009) Beyond nature and nurture: phenotypic plasticity in blood-feeding behavior of Anopheles gambiae s.s. when humans are not readily accessible. American Journal of Tropical Medicine and Hygiene. 81: 1023-1029 pdf
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Lekweiry KM, Abdallahi MO, Ba H, Arnathau C, Durand P, Trape JF & Salem AOM (2009) Preliminary study of malaria incidence in Nouakchott, Mauritania. Malaria Journal. 8: 92 pdf
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Noranate N, Prugnolle F, Jouin H, Tall A, Marrama L, Sokhna C, Ekala MT, Guillotte M, Bischoff E, Bouchier C, Patarapotikul J, Ohashi, Trape JF, Rogier C & Mercereau-Puijalon O (2009) Population diversity and antibody selective pressure to Plasmodium falciparum MSP1 block2 locus in an African malaria-endemic setting. BMC Microbiology. 9: 219
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Ollomo B, Durand P, Prugnolle F, Douzery E, Arnathau C, Nkoghe D, Leroy E & Renaud F (2009) A new malaria agent in African Hominids. PLoS Pathogens. 5: 5 pdf
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Prugnolle F & Chevillon C (2009) Evolution adaptative des pathogènes, identification des mécanismes et conséquences épidémiologiques. In Introduction à l'épidémiologie intégrative des maladies infectieuses et parasitaire. (Eds. Guégan J & Choisy M). pp. 311-345. de Boeck.
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Prugnolle F, Lefèvre T, Renaud F, Møller AP, Missé D & Thomas F (2009) Infection and body odours: Evolutionary and medical perspectives. Infection, Genetics and Evolution. 9: 1006-1009
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Pumpaibool T, Arnathau C, Durand P, Kanchanakhan N, Siripoon N, Suegorn A, Sitthiamorn C, Renaud F & Harnyuttanakorn P (2009) Genetic diversity and population structure of Plasmodium falciparum in Thailand, a low transmission country. Malaria Journal. 8: 155 pdf
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Roche B, Lebarbenchon C, Gauthier-Clerc M, Chang CM, Thomas F, Renaud F, van der Werf S & Guégan JF (2009) Water-borne transmission drives avian influenza dynamics in wild birds: The case of the 2005-2006 epidemics in the Camargue area. Infection, Genetics and Evolution. 9: 800-805 pdf
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Rougeron V, de Meeûs T, Hide M, Waleckx E, Bermudez H, Arevalo J, Llanos-Cuentas A, Dujardin JC, de Doncker S, Le Ray D, Ayala FJ & Bañuls AL (2009) Extreme inbreeding in Leishmania braziliensis. Proceedings of the National Academy of Sciences USA. 106: 10224-10229
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